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SummaryGeometryRelated PDB entries

5L0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NAPCAWdoub1.33Å1.30ÅAromatic
NAPCADsing1.34Å1.36ÅAromatic
CAGCAWsing1.41Å1.34ÅAromatic
CAGCACdoub1.36Å1.37ÅAromatic
CAWNAZsing1.37Å1.41ÅAromatic
CADCAHdoub1.35Å1.33ÅAromatic
CACCAEsing1.40Å1.43ÅAromatic
CAHNAZsing1.37Å1.35ÅAromatic
NAZCAVsing1.37Å1.35ÅAromatic
CAECAVdoub1.38Å1.37ÅAromatic
CAVCATsing1.47Å1.42Å
CAJCATsing1.39Å1.40ÅAromatic
CAJCAUdoub1.39Å1.40ÅAromatic
CATCAXdoub1.42Å1.38ÅAromatic
CAACARsing1.51Å1.51Å
CAUCARsing1.40Å1.39Å
CAUNBAsing1.39Å1.39ÅAromatic
CAXCAKsing1.40Å1.39ÅAromatic
CAXNBAsing1.37Å1.40ÅAromatic
CAROABdoub1.22Å1.26Å
CAKCASdoub1.39Å1.42ÅAromatic
NBACAIsing1.36Å1.40ÅAromatic
CAONAYsing1.47Å1.52Å
CAOCAMsing1.53Å1.58Å
CASNAYsing1.39Å1.40Å
CASCAFsing1.41Å1.43ÅAromatic
CAICAFdoub1.35Å1.39ÅAromatic
NAYCANsing1.47Å1.55Å
CAMOAQsing1.43Å1.40Å
OAQCALsing1.43Å1.41Å
CANCALsing1.53Å1.50Å
CANH1sing1.09Å1.10Å
CANH2sing1.09Å1.10Å
CALH3sing1.09Å1.10Å
CALH4sing1.09Å1.10Å
CAMH5sing1.09Å1.10Å
CAMH6sing1.09Å1.10Å
CAOH7sing1.09Å1.10Å
CAOH8sing1.09Å1.10Å
CAKH9sing1.08Å1.08Å
CAFH10sing1.08Å1.08Å
CAIH11sing1.08Å1.08Å
CAAH12sing1.09Å1.10Å
CAAH13sing1.09Å1.10Å
CAAH14sing1.09Å1.10Å
CAJH15sing1.08Å1.08Å
CAHH16sing1.08Å1.08Å
CADH17sing1.08Å1.08Å
CAGH18sing1.08Å1.08Å
CACH19sing1.08Å1.08Å
CAEH20sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAWNAPCAD105.9°109.2°
NAPCAWCAG129.3°132.2°
NAPCAWNAZ111.0°108.0°
NAPCADCAH110.4°108.7°
NAPCADH17124.8°125.7°
CAWCAGCAC119.6°119.8°
CAGCAWNAZ119.5°119.8°
CAWCAGH18120.2°120.1°
CAGCACCAE119.3°119.9°
CACCAGH18120.2°120.1°
CAGCACH19120.4°120.0°
CAWNAZCAH104.2°107.0°
CAWNAZCAV123.5°120.4°
CADCAHNAZ108.5°107.2°
CADCAHH16125.7°126.4°
CAHCADH17124.8°125.7°
CACCAECAV121.6°120.0°
CAECACH19120.4°120.1°
CACCAEH20119.2°120.0°
CAHNAZCAV132.3°132.6°
NAZCAHH16125.8°126.4°
NAZCAVCAE116.3°120.1°
NAZCAVCAT123.8°119.9°
CAECAVCAT119.8°120.0°
CAVCAEH20119.2°120.0°
CAVCATCAJ126.9°126.4°
CAVCATCAX124.1°126.3°
CATCAJCAU107.4°107.6°
CAJCATCAX108.5°107.3°
CATCAJH15126.3°126.2°
CAJCAUCAR127.6°125.7°
CAJCAUNBA107.6°108.5°
CAUCAJH15126.3°126.2°
CATCAXCAK136.1°131.8°
CATCAXNBA107.7°108.1°
CAACARCAU116.7°120.0°
CAACAROAB120.2°120.0°
CARCAAH12109.5°109.5°
CARCAAH13109.5°109.5°
CARCAAH14109.5°109.5°
CARCAUNBA124.8°125.7°
CAUCAROAB122.7°120.0°
CAUNBACAX108.6°108.5°
CAUNBACAI130.6°131.1°
CAKCAXNBA116.0°120.2°
CAXCAKCAS126.3°119.2°
CAXCAKH9116.8°120.4°
CAXNBACAI120.8°120.4°
CAKCASNAY123.9°120.4°
CAKCASCAF115.3°119.1°
CASCAKH9116.8°120.4°
NBACAICAF122.5°121.0°
NBACAIH11118.7°119.5°
NAYCAOCAM113.9°108.4°
CAONAYCAS121.4°121.0°
CAONAYCAN117.5°118.0°
NAYCAOH7108.3°109.6°
NAYCAOH8108.4°109.6°
CAOCAMOAQ105.6°109.2°
CAOCAMH5110.4°109.5°
CAOCAMH6110.4°109.6°
CAMCAOH7108.3°109.7°
CAMCAOH8108.3°109.7°
NAYCASCAF120.7°120.5°
CASNAYCAN120.0°121.0°
CASCAFCAI119.1°120.1°
CASCAFH10120.5°120.0°
CAICAFH10120.4°119.9°
CAFCAIH11118.7°119.5°
NAYCANCAL109.9°108.4°
NAYCANH1109.4°109.7°
NAYCANH2109.4°109.7°
CAMOAQCAL114.3°114.1°
OAQCAMH5110.4°109.5°
OAQCAMH6110.5°109.5°
OAQCALCAN102.8°109.2°
OAQCALH3111.1°109.5°
OAQCALH4111.1°109.5°
CALCANH1109.4°109.7°
CALCANH2109.4°109.7°
CANCALH3111.1°109.5°
CANCALH4111.1°109.6°
H1CANH2109.5°109.6°
H3CALH4109.4°109.5°
H5CAMH6109.5°109.5°
H7CAOH8109.5°109.7°
H12CAAH13109.4°109.4°
H12CAAH14109.5°109.5°
H13CAAH14109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NAPCAWCAGNAZ173.8°180.0°
NAPCAWCAGCAC179.6°180.0°
CAWNAPCADCAH1.0°0.0°
NAPCAWNAZCAH2.4°0.0°
NAPCAWNAZCAV178.5°180.0°
CAWNAPCADH17179.0°179.9°
NAPCAWCAGH180.5°0.0°
CADNAPCAWCAG175.2°180.0°
CADNAPCAWNAZ0.9°0.0°
NAPCADCAHH17180.0°180.0°
NAPCADCAHNAZ2.6°0.0°
NAPCADCAHH16177.5°180.0°
CAWCAGCACH18180.0°180.0°
CAWCAGCACCAE5.7°0.3°
CAGCAWNAZCAH177.3°180.0°
CAGCAWNAZCAV3.6°0.0°
CAWCAGCACH19174.3°180.0°
CACCAGCAWNAZ5.7°0.0°
CAGCACCAEH19180.0°179.7°
CAGCACCAECAV3.6°0.6°
CAGCACCAEH20176.5°180.0°
CAWNAZCAHCAD2.9°0.0°
CAWNAZCAHCAV179.0°180.0°
CAWNAZCAVCAE1.4°0.3°
CAWNAZCAVCAT177.0°180.0°
CAWNAZCAHH16177.1°180.0°
NAZCAWCAGH18174.3°180.0°
CADCAHNAZH16180.0°179.9°
CADCAHNAZCAV178.1°180.0°
CACCAECAVNAZ1.3°0.6°
CACCAECAVH20180.0°179.4°
CACCAECAVCAT177.2°179.7°
CAECACCAGH18174.3°179.7°
CAHNAZCAVCAE179.8°179.7°
CAHNAZCAVCAT4.2°0.0°
NAZCAHCADH17177.4°179.9°
NAZCAVCAECAT175.8°179.7°
NAZCAVCATCAJ43.6°75.0°
NAZCAVCATCAX127.0°105.0°
CAVNAZCAHH161.9°0.1°
NAZCAVCAEH20178.7°180.0°
CAECAVCATCAJ140.9°104.7°
CAECAVCATCAX48.5°75.3°
CAVCAECACH19176.4°179.7°
CAVCATCAJCAX171.8°179.9°
CAVCATCAJCAU174.6°179.9°
CAVCATCAXCAK9.7°0.1°
CAVCATCAXNBA176.7°179.9°
CAVCATCAJH155.4°0.1°
CATCAVCAEH202.8°0.3°
CATCAJCAUH15180.0°180.0°
CATCAJCAUCAR179.7°180.0°
CATCAJCAUNBA0.2°0.0°
CAJCATCAXCAK178.2°180.0°
CAJCATCAXNBA4.6°0.0°
CAUCAJCATCAX2.8°0.0°
CAJCAUCARCAA4.8°0.0°
CAJCAUCARNBA179.9°180.0°
CAJCAUNBACAX3.1°0.0°
CAJCAUCAROAB168.3°180.0°
CAJCAUNBACAI178.6°179.6°
CATCAXNBACAU4.8°0.0°
CATCAXCAKNBA173.2°180.0°
CATCAXCAKCAS174.8°180.0°
CATCAXNBACAI176.7°179.7°
CATCAXCAKH95.2°0.0°
CAXCATCAJH15177.2°180.0°
CAACARCAUOAB173.1°180.0°
CAACARCAUNBA175.3°180.0°
CARCAAH12H13120.0°120.0°
CARCAAH12H14120.0°120.0°
CARCAAH13H14120.0°120.0°
CARCAUNBACAX176.9°180.0°
CARCAUNBACAI1.4°0.4°
CAUCARCAAH12173.3°90.0°
CAUCARCAAH1366.7°150.0°
CAUCARCAAH1453.3°30.0°
CARCAUCAJH150.3°0.0°
CAUNBACAXCAK179.9°180.0°
CAUNBACAXCAI178.5°179.7°
NBACAUCAROAB11.6°0.0°
CAUNBACAICAF179.0°179.9°
CAUNBACAIH111.0°0.1°
NBACAUCAJH15179.8°180.0°
CAXCAKCASH9180.0°179.9°
CAKCAXNBACAI1.6°0.3°
CAXCAKCASNAY176.6°180.0°
CAXCAKCASCAF0.7°0.2°
NBACAXCAKCAS1.6°0.1°
CAXNBACAICAF0.9°0.3°
NBACAXCAKH9178.4°180.0°
CAXNBACAIH11179.1°179.7°
OABCARCAAH120.0°90.0°
OABCARCAAH13120.0°30.0°
OABCARCAAH14120.0°150.0°
CAKCASNAYCAO9.9°6.3°
CAKCASNAYCAF175.7°179.7°
CAKCASCAFCAI0.2°0.2°
CAKCASNAYCAN157.6°173.7°
CAKCASCAFH10179.8°179.8°
NBACAICAFCAS0.1°0.0°
NBACAICAFH11180.0°180.0°
NBACAICAFH10179.9°180.0°
NAYCAOCAMH7120.6°119.7°
NAYCAOCAMH8120.7°119.7°
CAONAYCASCAN167.6°180.0°
CAONAYCASCAF174.3°173.5°
NAYCAOCAMOAQ36.3°52.3°
CAONAYCANCAL36.2°50.5°
CAONAYCANH183.8°69.2°
CAONAYCANH2156.3°170.3°
NAYCAOCAMH583.1°67.6°
NAYCAOCAMH6155.7°172.2°
NAYCAOH7H8118.0°120.4°
CAMCAONAYCAS167.3°129.5°
CAMCAONAYCAN24.8°50.5°
CAOCAMOAQH5119.4°119.9°
CAOCAMOAQH6119.4°120.0°
CAOCAMOAQCAL69.3°62.5°
CAOCAMH5H6121.8°120.2°
CAMCAOH7H8117.9°120.6°
NAYCASCAFCAI175.9°180.0°
CASNAYCANCAL155.7°129.5°
CASNAYCANH184.2°110.8°
CASNAYCANH235.6°9.7°
CASNAYCAOH746.7°9.7°
CASNAYCAOH872.0°110.8°
NAYCASCAKH93.4°0.0°
NAYCASCAFH104.1°0.0°
CASCAFCAIH10180.0°180.0°
CAFCASNAYCAN18.1°6.5°
CAFCASCAKH9179.3°179.7°
CASCAFCAIH11179.9°180.0°
NAYCANCALOAQ58.0°52.3°
NAYCANCALH1120.1°119.8°
NAYCANCALH2120.1°119.8°
NAYCANH1H2119.8°120.5°
NAYCANCALH361.0°67.6°
NAYCANCALH4176.9°172.3°
CANNAYCAOH7145.4°170.3°
CANNAYCAOH895.9°69.3°
CAMOAQCALCAN82.7°62.5°
CAMOAQCALH336.2°57.4°
CAMOAQCALH4158.3°177.5°
OAQCAMH5H6121.8°120.1°
OAQCAMCAOH7156.9°172.0°
OAQCAMCAOH884.4°67.4°
OAQCALCANH3119.0°119.9°
OAQCALCANH4118.9°120.0°
OAQCALCANH162.1°67.5°
OAQCALCANH2178.1°172.1°
OAQCALH3H4123.1°120.1°
CALOAQCAMH550.1°57.4°
CALOAQCAMH6171.3°177.5°
CALCANH1H2119.8°120.5°
CANCALH3H4123.1°120.2°
H1CANCALH3179.0°172.7°
H1CANCALH456.9°52.5°
H2CANCALH359.1°52.2°
H2CANCALH463.0°67.9°
H5CAMCAOH737.5°52.1°
H5CAMCAOH8156.2°172.7°
H6CAMCAOH783.7°68.1°
H6CAMCAOH835.0°52.5°
H10CAFCAIH110.1°0.0°
H12CAAH13H14120.0°120.0°
H16CAHCADH172.6°0.0°
H18CAGCACH195.7°0.0°
H19CACCAEH203.6°0.3°

222624

PDB entries from 2024-07-17

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