English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

5KX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N06	C05	sing	1.34Å	1.34Å	Aromatic
N06	C02	doub	1.31Å	1.35Å	Aromatic
C05	C04	doub	1.35Å	1.37Å	Aromatic
C02	CL1	sing	1.74Å	1.74Å
C02	N03	sing	1.35Å	1.36Å	Aromatic
C04	N03	sing	1.37Å	1.35Å	Aromatic
N03	H1	sing	0.97Å	1.00Å
C04	H2	sing	1.08Å	1.08Å
C05	H3	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C05	N06	C02	108.9°	109.3°
N06	C05	C04	107.7°	108.0°
N06	C05	H3	126.2°	125.9°
N06	C02	CL1	126.3°	125.7°
N06	C02	N03	107.6°	108.7°
C05	C04	N03	107.7°	106.9°
C05	C04	H2	126.1°	126.6°
C04	C05	H3	126.2°	126.0°
CL1	C02	N03	126.1°	125.7°
C02	N03	C04	108.1°	107.2°
C02	N03	H1	125.9°	126.4°
C04	N03	H1	126.0°	126.5°
N03	C04	H2	126.1°	126.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N06	C05	C04	H3	180.0°	179.8°
C05	N06	C02	CL1	179.7°	179.9°
C05	N06	C02	N03	0.4°	0.4°
N06	C05	C04	N03	0.5°	0.2°
N06	C05	C04	H2	179.5°	179.7°
C02	N06	C05	C04	0.0°	0.4°
N06	C02	CL1	N03	179.2°	179.6°
N06	C02	N03	C04	0.8°	0.3°
N06	C02	N03	H1	179.2°	179.8°
C02	N06	C05	H3	180.0°	179.8°
C05	C04	N03	C02	0.8°	0.0°
C05	C04	N03	H2	180.0°	180.0°
C05	C04	N03	H1	179.2°	180.0°
CL1	C02	N03	C04	179.9°	180.0°
CL1	C02	N03	H1	0.1°	0.1°
C02	N03	C04	H1	180.0°	179.9°
C02	N03	C04	H2	179.2°	180.0°
N03	C04	C05	H3	179.5°	179.9°
H1	N03	C04	H2	0.8°	0.1°
H2	C04	C05	H3	0.5°	0.1°

227344

PDB entries from 2024-11-13

PDB statistics

PDBj update info

Contact PDBj

numon