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5KT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6'C6'sing1.43Å1.43Å
C6'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
N2N3doub1.29Å1.40ÅAromatic
N2N1sing1.29Å1.40ÅAromatic
O5'C1'sing1.43Å1.44Å
O2C2sing1.43Å1.43Å
N3CBsing1.34Å1.35ÅAromatic
C3N1sing1.47Å1.48Å
C3C2sing1.53Å1.52Å
C3C4sing1.53Å1.53Å
C4'O4'sing1.43Å1.43Å
C4'C3'sing1.53Å1.53Å
C1C2sing1.53Å1.53Å
C1S1sing1.81Å1.76Å
C1O5sing1.43Å1.43Å
N1CAsing1.35Å1.34ÅAromatic
C1'S1sing1.81Å1.76Å
C1'C2'sing1.53Å1.53Å
C5C4sing1.53Å1.52Å
C5O5sing1.43Å1.43Å
C5C6sing1.53Å1.53Å
C4O4sing1.43Å1.43Å
CBCAdoub1.36Å1.38ÅAromatic
CBCDsing1.49Å1.49Å
O6C6sing1.43Å1.43Å
CFCDsing1.39Å1.39ÅAromatic
CFCGdoub1.33Å1.38ÅAromatic
C3'C2'sing1.53Å1.53Å
C3'N1'sing1.47Å1.49Å
CDCEdoub1.34Å1.38ÅAromatic
C2'O2'sing1.43Å1.44Å
CGS2sing1.76Å1.75ÅAromatic
N1'CA'sing1.35Å1.34ÅAromatic
N1'N2'sing1.29Å1.40ÅAromatic
CES2sing1.76Å1.74ÅAromatic
CA'CB'doub1.36Å1.37ÅAromatic
N2'N3'doub1.29Å1.41ÅAromatic
CB'N3'sing1.34Å1.35ÅAromatic
CB'CD'sing1.49Å1.50Å
CD'CF'sing1.39Å1.39ÅAromatic
CD'CE'doub1.34Å1.38ÅAromatic
CF'CG'doub1.33Å1.38ÅAromatic
CE'S2'sing1.76Å1.75ÅAromatic
CG'S2'sing1.76Å1.75ÅAromatic
C6H1sing1.09Å1.10Å
C6H2sing1.09Å1.10Å
C5H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C4H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C4'H7sing1.09Å1.10Å
C2'H8sing1.09Å1.10Å
C6'H9sing1.09Å1.10Å
C6'H10sing1.09Å1.10Å
O6H11sing0.97Å0.95Å
O4H12sing0.97Å0.95Å
C3H13sing1.09Å1.10Å
CFH14sing1.08Å1.08Å
CEH15sing1.08Å1.08Å
CGH16sing1.08Å1.08Å
CAH17sing1.08Å1.08Å
O2H18sing0.97Å0.95Å
C1H19sing1.09Å1.10Å
C1'H20sing1.09Å1.10Å
O6'H21sing0.97Å0.95Å
O2'H22sing0.97Å0.95Å
C3'H23sing1.09Å1.10Å
O4'H24sing0.97Å0.95Å
CA'H25sing1.08Å1.08Å
CF'H26sing1.08Å1.08Å
CE'H27sing1.08Å1.08Å
CG'H28sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6'C6'C5'109.4°109.5°
O6'C6'H9109.5°109.5°
O6'C6'H10109.5°109.5°
C6'O6'H21109.5°114.1°
C6'C5'O5'109.6°109.5°
C6'C5'C4'111.5°109.5°
C6'C5'H6108.1°109.5°
C5'C6'H9109.5°109.5°
C5'C6'H10109.5°109.4°
O5'C5'C4'110.2°109.4°
C5'O5'C1'112.6°114.1°
O5'C5'H6109.3°109.5°
C5'C4'O4'110.2°109.6°
C5'C4'C3'108.6°109.2°
C4'C5'H6108.1°109.5°
C5'C4'H7108.5°109.5°
N3N2N1106.3°110.4°
N2N3CB104.5°108.9°
N2N1C3113.4°125.8°
N2N1CA111.8°108.5°
O5'C1'S1108.6°109.4°
O5'C1'C2'110.2°109.4°
O5'C1'H20110.8°109.5°
O2C2C3108.9°109.6°
O2C2C1110.6°109.5°
O2C2H4110.1°109.6°
C2O2H18109.5°114.0°
N3CBCA114.5°106.2°
N3CBCD121.3°126.9°
N1C3C2112.7°109.5°
N1C3C4108.6°109.5°
C3N1CA134.8°125.8°
N1C3H13108.9°109.5°
C2C3C4109.7°109.1°
C3C2C1109.7°109.1°
C3C2H4108.9°109.5°
C2C3H13108.5°109.6°
C3C4C5111.1°109.1°
C3C4O4109.7°109.6°
C3C4H5108.3°109.6°
C4C3H13108.4°109.6°
O4'C4'C3'111.2°109.5°
O4'C4'H7109.8°109.5°
C4'O4'H24109.5°114.0°
C4'C3'C2'109.2°109.0°
C4'C3'N1'113.3°109.6°
C3'C4'H7108.5°109.5°
C4'C3'H23107.4°109.6°
C2C1S1110.1°109.5°
C2C1O5112.0°109.4°
C1C2H4108.8°109.5°
C2C1H19109.7°109.5°
S1C1O5106.6°109.5°
C1S1C1'102.9°103.0°
S1C1H19107.0°109.4°
C1O5C5113.0°114.1°
O5C1H19111.2°109.5°
N1CACB103.0°106.0°
N1CAH17128.5°127.0°
S1C1'C2'110.8°109.5°
S1C1'H20106.8°109.5°
C1'C2'C3'108.3°109.1°
C1'C2'O2'111.2°109.5°
C1'C2'H8108.4°109.5°
C2'C1'H20109.5°109.5°
C4C5O5108.9°109.4°
C4C5C6112.1°109.4°
C5C4O4109.7°109.5°
C4C5H3108.6°109.5°
C5C4H5108.4°109.5°
O5C5C6109.0°109.5°
O5C5H3109.8°109.5°
C5C6O6108.7°109.4°
C5C6H1109.7°109.5°
C5C6H2109.7°109.5°
C6C5H3108.5°109.5°
O4C4H5109.6°109.5°
C4O4H12109.5°114.0°
CACBCD124.2°126.9°
CBCAH17128.5°127.0°
CBCDCF120.7°122.7°
CBCDCE122.5°122.7°
O6C6H1109.6°109.4°
O6C6H2109.7°109.5°
C6O6H11109.5°114.0°
CDCFCG108.1°114.9°
CFCDCE116.8°114.5°
CDCFH14126.0°122.6°
CFCGS2115.5°109.9°
CGCFH14125.9°122.5°
CFCGH16122.2°125.1°
C2'C3'N1'111.4°109.5°
C3'C2'O2'110.9°109.6°
C3'C2'H8108.4°109.6°
C2'C3'H23107.5°109.5°
C3'N1'CA'132.1°125.8°
C3'N1'N2'116.6°125.8°
N1'C3'H23107.9°109.6°
CDCES2110.9°109.5°
CDCEH15124.6°125.2°
O2'C2'H8109.6°109.5°
C2'O2'H22109.5°114.0°
CGS2CE88.6°91.2°
S2CGH16122.2°125.1°
CA'N1'N2'111.3°108.4°
N1'CA'CB'103.7°106.0°
N1'CA'H25128.2°127.0°
N1'N2'N3'106.4°110.5°
S2CEH15124.5°125.2°
CA'CB'N3'114.5°106.3°
CA'CB'CD'123.4°126.9°
CB'CA'H25128.1°127.0°
N2'N3'CB'104.1°108.8°
N3'CB'CD'122.1°126.9°
CB'CD'CF'120.6°122.7°
CB'CD'CE'120.8°122.7°
CF'CD'CE'118.5°114.5°
CD'CF'CG'109.5°114.9°
CD'CF'H26125.3°122.5°
CD'CE'S2'107.7°109.6°
CD'CE'H27126.2°125.2°
CF'CG'S2'112.5°109.9°
CG'CF'H26125.3°122.6°
CF'CG'H28123.7°125.0°
CE'S2'CG'91.7°91.1°
S2'CE'H27126.1°125.2°
S2'CG'H28123.7°125.1°
H1C6H2109.5°109.5°
H9C6'H10109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6'C6'C5'H9120.0°120.0°
O6'C6'C5'H10120.0°120.0°
O6'C6'C5'O5'65.9°65.0°
O6'C6'C5'C4'171.8°175.1°
O6'C6'C5'H653.2°55.1°
O6'C6'H9H10120.0°120.0°
C6'C5'O5'C4'123.1°120.0°
C6'C5'O5'H6118.3°120.1°
C6'C5'C4'H6118.7°120.0°
C6'C5'O5'C1'176.0°178.8°
C6'C5'C4'O4'58.2°57.7°
C6'C5'C4'C3'179.7°177.6°
C6'C5'C4'H762.0°62.5°
C5'C6'H9H10120.0°120.0°
C5'C6'O6'H21180.0°180.0°
O5'C5'C4'H6119.4°120.0°
O5'C5'C4'O4'63.8°62.3°
O5'C5'C4'C3'58.3°57.6°
C5'O5'C1'S1177.2°178.9°
C5'O5'C1'C2'61.2°61.2°
O5'C5'C4'H7176.0°177.6°
O5'C5'C6'H954.1°175.0°
O5'C5'C6'H10174.1°55.0°
C5'O5'C1'H2060.2°58.8°
C4'C5'O5'C1'60.9°61.2°
C5'C4'O4'C3'120.5°119.7°
C5'C4'O4'H7119.4°120.2°
C5'C4'C3'H7117.7°119.9°
C5'C4'C3'C2'57.8°57.0°
C5'C4'C3'N1'177.5°176.9°
C4'C5'C6'H968.1°55.1°
C4'C5'C6'H1051.8°64.9°
C5'C4'C3'H2358.4°62.9°
C5'C4'O4'H24180.0°60.0°
N3N2N1C3179.0°180.0°
N3N2N1CA0.7°0.0°
N2N3CBCA0.0°0.1°
N2N3CBCD179.8°180.0°
N1N2N3CB0.4°0.0°
N2N1C3CA177.8°180.0°
N2N1C3C2126.1°145.0°
N2N1C3C4112.2°95.4°
N2N1CACB0.6°0.0°
N2N1C3H135.7°24.8°
N2N1CAH17179.4°179.9°
O5'C1'S1C1107.7°65.1°
O5'C1'S1C2'121.2°119.9°
O5'C1'S1H20119.6°120.0°
O5'C1'C2'H20122.1°120.0°
O5'C1'C2'C3'58.7°57.6°
O5'C1'C2'O2'179.3°177.5°
C1'O5'C5'H657.7°58.8°
O5'C1'C2'H858.7°62.3°
O2C2C3N165.6°63.2°
O2C2C3C1121.1°119.9°
O2C2C3H4120.0°120.2°
O2C2C3C4173.2°176.9°
O2C2C1H4120.9°120.2°
O2C2C1S167.2°62.5°
O2C2C1O5174.4°177.5°
O2C2C3H1355.0°57.0°
O2C2C1H1950.4°57.5°
N3CBCAN10.4°0.1°
N3CBCACD179.9°180.0°
N3CBCDCF9.3°5.3°
N3CBCDCE169.9°175.1°
N3CBCAH17179.7°179.9°
N1C3C2C4121.1°119.8°
N1C3C2H13120.7°120.2°
N1C3C4H13118.2°120.2°
N1C3C2C1173.3°176.8°
N1C3C4C5178.9°176.9°
N1C3C4O457.4°57.0°
C3N1CACB178.4°180.0°
N1C3C2H454.3°57.0°
N1C3C4H562.2°63.2°
C3N1CAH171.6°0.1°
C2C3C4H13118.2°120.0°
C3C2C1H4119.0°119.9°
C3C2C1S1172.7°177.6°
C3C2C1O554.3°57.6°
C2C3N1CA56.2°35.0°
C2C3C4C555.4°57.0°
C2C3C4O466.1°62.9°
C2C3C4H5174.3°176.9°
C3C2O2H18180.0°179.8°
C3C2C1H1969.7°62.4°
C4C3C2C152.1°57.0°
C4C3N1CA65.5°84.5°
C3C4C5O4121.5°119.9°
C3C4C5H5118.9°120.0°
C3C4C5O558.3°57.6°
C3C4C5C6179.0°177.6°
C3C4O4H5118.8°120.3°
C3C4C5H361.2°62.4°
C4C3C2H466.8°62.9°
C3C4O4H12180.0°179.6°
O4'C4'C3'H7120.9°120.1°
O4'C4'C3'C2'63.6°63.0°
O4'C4'C3'N1'61.1°56.9°
O4'C4'C5'H6176.8°177.7°
O4'C4'C3'H23179.8°177.2°
C4'C3'C2'C1'57.9°57.0°
C4'C3'C2'N1'125.8°119.9°
C4'C3'C2'H23116.2°119.9°
C4'C3'N1'H23118.8°120.2°
C4'C3'C2'O2'179.9°176.9°
C4'C3'N1'CA'111.5°85.0°
C4'C3'N1'N2'70.1°95.0°
C3'C4'C5'H661.1°62.4°
C4'C3'C2'H859.5°62.9°
C3'C4'O4'H2459.5°179.7°
C2C1S1O5121.7°120.0°
C2C1S1H19119.2°120.0°
C2C1O5H19123.2°120.0°
C2C1S1C1'177.2°175.0°
C2C1O5C559.7°61.2°
C1C2C3H1366.1°63.0°
C1C2O2H1859.4°60.1°
S1C1O5H19116.3°120.0°
C1S1C1'C2'131.1°175.0°
S1C1O5C5179.8°178.8°
S1C1C2H453.7°57.7°
C1S1C1'H2011.9°54.9°
O5C1S1C1'61.0°65.0°
C1O5C5C460.5°61.1°
C1O5C5C6177.0°178.9°
C1O5C5H358.3°58.8°
O5C1C2H464.7°62.3°
N1CACBH17180.0°179.9°
N1CACBCD179.8°180.0°
CAN1C3H13176.6°155.2°
S1C1'C2'H20117.6°120.0°
S1C1'C2'C3'178.9°177.6°
S1C1'C2'O2'59.0°62.5°
S1C1'C2'H861.5°57.6°
C1'S1C1H1958.0°55.0°
C1'C2'C3'O2'122.2°119.9°
C1'C2'C3'H8117.4°119.9°
C1'C2'C3'N1'176.3°176.9°
C1'C2'O2'H8119.8°120.1°
C1'C2'O2'H22180.0°60.1°
C1'C2'C3'H2358.3°62.9°
C4C5O5C6122.6°119.9°
C4C5O5H3118.8°120.0°
C4C5C6H3119.8°120.0°
C5C4O4H5118.9°120.1°
C4C5C6O6176.1°175.0°
C4C5C6H156.3°55.1°
C4C5C6H264.0°65.0°
C5C4O4H1257.7°60.0°
C5C4C3H1362.9°62.9°
O5C5C6H3119.5°120.1°
O5C5C4O463.2°62.3°
O5C5C6O663.2°65.1°
O5C5C6H1177.0°175.0°
O5C5C6H256.7°54.9°
O5C5C4H5177.1°177.6°
C5O5C1H1963.5°58.9°
C6C5C4O457.5°57.7°
C5C6O6H1119.9°120.0°
C5C6O6H2119.9°120.0°
C5C6H1H2120.4°120.1°
C6C5C4H562.1°62.4°
C5C6O6H11180.0°180.0°
O4C4C5H3177.2°177.7°
O4C4C3H13175.6°177.2°
CACBCDCF170.9°174.8°
CACBCDCE9.9°4.9°
CBCDCFCE179.2°179.7°
CBCDCFCG179.7°180.0°
CBCDCES2180.0°180.0°
CBCDCFH140.3°0.1°
CBCDCEH150.0°0.1°
CDCBCAH170.2°0.1°
O6C6H1H2120.4°120.0°
O6C6C5H356.3°55.0°
CDCFCGH14180.0°179.9°
CDCFCGS20.1°0.2°
CFCDCES20.7°0.4°
CFCDCEH15179.2°179.8°
CDCFCGH16180.0°180.0°
CGCFCDCE0.5°0.4°
CFCGS2H16180.0°179.9°
CFCGS2CE0.3°0.0°
C2'C3'N1'H23117.7°120.2°
C3'C2'O2'H8119.6°120.2°
C2'C3'N1'CA'125.0°34.6°
C2'C3'N1'N2'53.4°145.4°
C2'C3'C4'H7175.5°176.9°
C3'C2'C1'H2063.5°62.4°
C3'C2'O2'H2259.5°179.8°
N1'C3'C2'O2'54.0°63.2°
C3'N1'CA'N2'178.5°179.9°
C3'N1'CA'CB'179.4°180.0°
C3'N1'N2'N3'179.2°179.9°
N1'C3'C4'H759.8°63.2°
N1'C3'C2'H866.3°57.0°
C3'N1'CA'H250.7°0.1°
CDCES2CG0.5°0.2°
CDCES2H15180.0°179.9°
CECDCFH14179.5°179.7°
O2'C2'C1'H2058.6°57.5°
O2'C2'C3'H2363.9°57.0°
S2CGCFH14180.0°179.9°
CGS2CEH15179.4°179.9°
N1'CA'CB'H25180.0°179.9°
CA'N1'N2'N3'0.5°0.0°
N1'CA'CB'N3'1.0°0.1°
N1'CA'CB'CD'178.6°180.0°
CA'N1'C3'H237.2°154.8°
N2'N1'CA'CB'0.9°0.0°
N1'N2'N3'CB'0.1°0.1°
N2'N1'C3'H23171.2°25.3°
N2'N1'CA'H25179.1°180.0°
CES2CGH16179.7°179.8°
CA'CB'N3'N2'0.7°0.1°
CA'CB'N3'CD'177.6°179.9°
CA'CB'CD'CF'14.9°180.0°
CA'CB'CD'CE'167.9°0.3°
N2'N3'CB'CD'178.4°180.0°
N3'CB'CD'CF'162.5°0.1°
N3'CB'CD'CE'14.7°179.8°
N3'CB'CA'H25179.0°180.0°
CB'CD'CF'CE'177.3°179.7°
CB'CD'CF'CG'178.8°180.0°
CB'CD'CE'S2'178.7°180.0°
CD'CB'CA'H251.4°0.1°
CB'CD'CF'H261.3°0.0°
CB'CD'CE'H271.4°0.0°
CD'CF'CG'H26180.0°180.0°
CF'CD'CE'S2'1.4°0.2°
CD'CF'CG'S2'0.8°0.1°
CF'CD'CE'H27178.6°179.8°
CD'CF'CG'H28179.1°179.9°
CE'CD'CF'CG'1.5°0.2°
CD'CE'S2'H27180.0°180.0°
CD'CE'S2'CG'0.7°0.2°
CE'CD'CF'H26178.5°179.7°
CF'CG'S2'CE'0.1°0.0°
CF'CG'S2'H28180.0°180.0°
CE'S2'CG'H28179.9°179.9°
S2'CG'CF'H26179.2°179.9°
CG'S2'CE'H27179.3°179.8°
H1C6C5H363.5°65.0°
H1C6O6H1160.2°60.1°
H2C6C5H3176.2°175.0°
H2C6O6H1160.1°59.9°
H3C5C4H557.6°57.6°
H4C2C3H13175.0°177.2°
H4C2O2H1860.8°60.0°
H4C2C1H19171.3°177.7°
H5C4O4H1261.2°60.1°
H5C4C3H1356.0°57.0°
H6C5'C4'H756.6°57.6°
H6C5'C6'H9173.2°65.0°
H6C5'C6'H1066.8°175.1°
H7C4'C3'H2359.3°57.0°
H7C4'O4'H2460.6°60.2°
H8C2'C1'H20179.1°177.7°
H8C2'O2'H2260.2°60.0°
H8C2'C3'H23175.7°177.2°
H9C6'O6'H2160.0°60.0°
H10C6'O6'H2160.0°60.0°
H14CFCGH160.0°0.1°
H26CF'CG'H280.8°0.1°

246704

PDB entries from 2025-12-24

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