5JV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CE	CD	doub	1.33Å	1.32Å
OA	CA	doub	1.21Å	1.26Å
CB	CA	sing	1.51Å	1.48Å
CB	CG	sing	1.53Å	1.52Å
CA	OB	sing	1.34Å	1.25Å
CD	CG	sing	1.51Å	1.50Å
CD	N2	sing	1.36Å	1.51Å
N2	C4A	doub	1.30Å	1.26Å
O3	C3	sing	1.36Å	1.37Å
C4A	C4	sing	1.47Å	1.50Å
C3	C4	doub	1.41Å	1.41Å	Aromatic
C3	C2	sing	1.39Å	1.39Å	Aromatic
C2A	C2	sing	1.51Å	1.52Å
C4	C5	sing	1.40Å	1.40Å	Aromatic
C2	N1	doub	1.32Å	1.36Å	Aromatic
O3P	P	doub	1.48Å	1.51Å
C5	C5A	sing	1.51Å	1.53Å
C5	C6	doub	1.38Å	1.41Å	Aromatic
N1	C6	sing	1.32Å	1.32Å	Aromatic
O4P	C5A	sing	1.43Å	1.42Å
O4P	P	sing	1.61Å	1.61Å
P	O1P	sing	1.61Å	1.51Å
P	O2P	sing	1.61Å	1.49Å
OB	H1	sing	0.97Å	0.95Å
CB	H2	sing	1.09Å	1.10Å
CB	H3	sing	1.09Å	1.10Å
CG	H4	sing	1.09Å	1.10Å
CG	H5	sing	1.09Å	1.10Å
CE	H6	sing	1.08Å	1.08Å
CE	H7	sing	1.08Å	1.08Å
C4A	H8	sing	1.08Å	1.08Å
O3	H9	sing	0.97Å	0.95Å
C2A	H10	sing	1.09Å	1.10Å
C2A	H11	sing	1.09Å	1.10Å
C2A	H12	sing	1.09Å	1.10Å
C6	H13	sing	1.08Å	1.08Å
C5A	H14	sing	1.09Å	1.10Å
C5A	H15	sing	1.09Å	1.10Å
O1P	H16	sing	0.97Å	0.95Å
O2P	H17	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CE	CD	CG	119.3°	120.0°
CE	CD	N2	117.6°	120.0°
CD	CE	H6	120.0°	120.0°
CD	CE	H7	120.0°	120.1°
OA	CA	CB	113.9°	120.1°
OA	CA	OB	127.4°	119.9°
CA	CB	CG	113.8°	109.5°
CB	CA	OB	118.7°	120.0°
CA	CB	H2	108.4°	109.5°
CA	CB	H3	108.4°	109.5°
CB	CG	CD	114.3°	109.5°
CG	CB	H2	108.4°	109.5°
CG	CB	H3	108.4°	109.4°
CB	CG	H4	108.3°	109.5°
CB	CG	H5	108.3°	109.4°
CA	OB	H1	109.5°	117.0°
CG	CD	N2	123.0°	120.0°
CD	CG	H4	108.2°	109.5°
CD	CG	H5	108.2°	109.5°
CD	N2	C4A	124.6°	120.0°
N2	C4A	C4	120.5°	120.0°
N2	C4A	H8	119.8°	120.0°
O3	C3	C4	122.7°	120.6°
O3	C3	C2	117.5°	120.6°
C3	O3	H9	109.5°	114.0°
C4A	C4	C3	122.5°	121.0°
C4A	C4	C5	119.6°	121.0°
C4	C4A	H8	119.7°	120.0°
C4	C3	C2	119.8°	118.8°
C3	C4	C5	117.9°	118.0°
C3	C2	C2A	119.1°	119.6°
C3	C2	N1	120.2°	120.8°
C2A	C2	N1	120.7°	119.6°
C2	C2A	H10	109.5°	109.5°
C2	C2A	H11	109.5°	109.5°
C2	C2A	H12	109.5°	109.5°
C4	C5	C5A	123.4°	120.5°
C4	C5	C6	119.6°	119.1°
C2	N1	C6	121.7°	122.2°
O3P	P	O4P	106.1°	109.4°
O3P	P	O1P	114.6°	109.5°
O3P	P	O2P	114.7°	109.5°
C5A	C5	C6	117.0°	120.5°
C5	C5A	O4P	110.8°	109.5°
C5	C5A	H14	109.1°	109.5°
C5	C5A	H15	109.2°	109.5°
C5	C6	N1	120.7°	121.0°
C5	C6	H13	119.6°	119.5°
N1	C6	H13	119.7°	119.5°
C5A	O4P	P	120.7°	123.0°
O4P	C5A	H14	109.1°	109.4°
O4P	C5A	H15	109.1°	109.5°
O4P	P	O1P	101.0°	109.5°
O4P	P	O2P	107.1°	109.5°
O1P	P	O2P	112.0°	109.5°
P	O1P	H16	109.5°	114.0°
P	O2P	H17	109.5°	114.0°
H2	CB	H3	109.5°	109.4°
H4	CG	H5	109.5°	109.5°
H6	CE	H7	120.0°	120.0°
H10	C2A	H11	109.5°	109.5°
H10	C2A	H12	109.5°	109.5°
H11	C2A	H12	109.5°	109.5°
H14	C5A	H15	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CE	CD	CG	CB	21.4°	95.0°
CE	CD	CG	N2	179.7°	180.0°
CE	CD	N2	C4A	148.7°	180.0°
CE	CD	CG	H4	99.3°	25.0°
CE	CD	CG	H5	142.1°	145.0°
CD	CE	H6	H7	180.0°	179.9°
OA	CA	CB	OB	179.4°	179.8°
OA	CA	CB	CG	162.9°	0.1°
OA	CA	OB	H1	0.0°	0.1°
OA	CA	CB	H2	76.5°	120.0°
OA	CA	CB	H3	42.3°	120.0°
CA	CB	CG	H2	120.6°	120.0°
CA	CB	CG	H3	120.7°	120.0°
CA	CB	CG	CD	173.8°	180.0°
CB	CA	OB	H1	179.2°	179.7°
CA	CB	H2	H3	118.0°	120.0°
CA	CB	CG	H4	53.1°	60.0°
CA	CB	CG	H5	65.5°	60.0°
CG	CB	CA	OB	17.7°	179.7°
CB	CG	CD	H4	120.7°	120.0°
CB	CG	CD	H5	120.7°	120.0°
CB	CG	CD	N2	158.9°	85.0°
CG	CB	H2	H3	118.0°	120.0°
CB	CG	H4	H5	117.8°	120.0°
OB	CA	CB	H2	102.9°	60.2°
OB	CA	CB	H3	138.4°	59.7°
CG	CD	N2	C4A	31.6°	0.0°
CD	CG	CB	H2	65.5°	59.9°
CD	CG	CB	H3	53.2°	60.0°
CD	CG	H4	H5	117.8°	120.0°
CG	CD	CE	H6	179.7°	180.0°
CG	CD	CE	H7	0.3°	0.1°
CD	N2	C4A	C4	178.8°	180.0°
N2	CD	CG	H4	80.4°	155.0°
N2	CD	CG	H5	38.2°	35.0°
N2	CD	CE	H6	0.0°	0.0°
N2	CD	CE	H7	180.0°	180.0°
CD	N2	C4A	H8	1.2°	0.0°
N2	C4A	C4	H8	180.0°	180.0°
N2	C4A	C4	C3	1.2°	0.3°
N2	C4A	C4	C5	176.5°	180.0°
O3	C3	C4	C4A	0.4°	0.0°
O3	C3	C4	C2	179.6°	180.0°
O3	C3	C2	C2A	0.7°	0.0°
O3	C3	C4	C5	178.2°	179.8°
O3	C3	C2	N1	179.5°	180.0°
C4A	C4	C3	C5	177.7°	179.8°
C4A	C4	C3	C2	180.0°	180.0°
C4A	C4	C5	C5A	1.1°	0.0°
C4A	C4	C5	C6	179.3°	179.8°
C4	C3	C2	C2A	178.9°	180.0°
C4	C3	C2	N1	0.9°	0.0°
C3	C4	C5	C5A	178.9°	179.7°
C3	C4	C5	C6	3.0°	0.4°
C3	C4	C4A	H8	178.8°	179.7°
C4	C3	O3	H9	180.0°	90.0°
C3	C2	C2A	N1	179.8°	180.0°
C2	C3	C4	C5	2.2°	0.2°
C3	C2	N1	C6	0.2°	0.0°
C2	C3	O3	H9	0.4°	90.0°
C3	C2	C2A	H10	179.8°	90.0°
C3	C2	C2A	H11	59.8°	150.0°
C3	C2	C2A	H12	60.2°	30.0°
C2A	C2	N1	C6	179.5°	180.0°
C2	C2A	H10	H11	120.0°	120.0°
C2	C2A	H10	H12	120.0°	120.0°
C2	C2A	H11	H12	120.0°	120.0°
C4	C5	C5A	C6	178.2°	179.8°
C4	C5	C6	N1	2.4°	0.5°
C4	C5	C5A	O4P	75.3°	179.9°
C5	C4	C4A	H8	3.5°	0.0°
C4	C5	C6	H13	177.6°	179.8°
C4	C5	C5A	H14	164.5°	60.0°
C4	C5	C5A	H15	44.9°	60.0°
C2	N1	C6	C5	1.0°	0.2°
N1	C2	C2A	H10	0.0°	90.0°
N1	C2	C2A	H11	120.0°	30.0°
N1	C2	C2A	H12	120.0°	150.0°
C2	N1	C6	H13	179.0°	180.0°
O3P	P	O4P	C5A	73.9°	55.0°
O3P	P	O4P	O1P	119.8°	120.0°
O3P	P	O4P	O2P	122.9°	120.0°
O3P	P	O1P	O2P	132.8°	120.0°
O3P	P	O1P	H16	0.0°	179.9°
O3P	P	O2P	H17	0.0°	60.0°
C5A	C5	C6	N1	179.4°	179.7°
C5	C5A	O4P	H14	120.2°	120.0°
C5	C5A	O4P	H15	120.2°	120.0°
C5	C5A	O4P	P	158.6°	180.0°
C5A	C5	C6	H13	0.6°	0.0°
C5	C5A	H14	H15	119.4°	120.0°
C5	C6	N1	H13	180.0°	179.7°
C6	C5	C5A	O4P	102.9°	0.2°
C6	C5	C5A	H14	17.3°	120.2°
C6	C5	C5A	H15	136.9°	119.8°
C5A	O4P	P	O1P	166.4°	65.0°
C5A	O4P	P	O2P	49.1°	175.0°
O4P	C5A	H14	H15	119.4°	120.0°
O4P	P	O1P	O2P	113.6°	120.0°
P	O4P	C5A	H14	81.2°	60.0°
P	O4P	C5A	H15	38.4°	60.0°
O4P	P	O1P	H16	113.5°	59.9°
O4P	P	O2P	H17	117.4°	180.0°
O1P	P	O2P	H17	132.8°	60.0°
O2P	P	O1P	H16	132.8°	60.0°
H2	CB	CG	H4	173.8°	180.0°
H2	CB	CG	H5	55.2°	60.1°
H3	CB	CG	H4	67.5°	60.0°
H3	CB	CG	H5	173.9°	180.0°
H10	C2A	H11	H12	120.0°	120.0°

Release date:	2016-10-19
Definition date:	2015-10-05
Last modified:	2016-10-14
Release status:	REL
Processing site:	RCSB
Derived from:	5E3K