5J2
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O01 | C02 | sing | 1.36Å | 1.41Å | |
C09 | C08 | doub | 1.38Å | 1.39Å | Aromatic |
C09 | C10 | sing | 1.39Å | 1.38Å | Aromatic |
C03 | C02 | doub | 1.39Å | 1.38Å | Aromatic |
C03 | C04 | sing | 1.38Å | 1.39Å | Aromatic |
O11 | C10 | sing | 1.36Å | 1.41Å | |
C02 | C24 | sing | 1.39Å | 1.39Å | Aromatic |
C08 | C07 | sing | 1.40Å | 1.39Å | Aromatic |
C10 | C12 | doub | 1.39Å | 1.38Å | Aromatic |
C04 | C05 | doub | 1.40Å | 1.39Å | Aromatic |
C24 | C23 | doub | 1.38Å | 1.38Å | Aromatic |
C05 | C23 | sing | 1.40Å | 1.38Å | Aromatic |
C05 | C06 | sing | 1.48Å | 1.51Å | |
C07 | C06 | sing | 1.48Å | 1.52Å | |
C07 | C13 | doub | 1.40Å | 1.39Å | Aromatic |
C12 | C13 | sing | 1.38Å | 1.38Å | Aromatic |
C06 | N15 | doub | 1.32Å | 1.31Å | |
C13 | O14 | sing | 1.36Å | 1.41Å | |
N15 | C16 | sing | 1.37Å | 1.42Å | |
C16 | C17 | doub | 1.40Å | 1.39Å | Aromatic |
C16 | C22 | sing | 1.40Å | 1.39Å | Aromatic |
C17 | C18 | sing | 1.38Å | 1.39Å | Aromatic |
C22 | C21 | doub | 1.38Å | 1.38Å | Aromatic |
C18 | C19 | doub | 1.39Å | 1.39Å | Aromatic |
C21 | C19 | sing | 1.39Å | 1.39Å | Aromatic |
C19 | F20 | sing | 1.35Å | 1.34Å | |
O01 | H1 | sing | 0.97Å | 0.95Å | |
C03 | H2 | sing | 1.08Å | 1.08Å | |
C04 | H3 | sing | 1.08Å | 1.08Å | |
C08 | H4 | sing | 1.08Å | 1.08Å | |
C09 | H5 | sing | 1.08Å | 1.08Å | |
O11 | H6 | sing | 0.97Å | 0.95Å | |
C12 | H7 | sing | 1.08Å | 1.08Å | |
O14 | H8 | sing | 0.97Å | 0.95Å | |
C17 | H9 | sing | 1.08Å | 1.08Å | |
C18 | H10 | sing | 1.08Å | 1.08Å | |
C21 | H11 | sing | 1.08Å | 1.08Å | |
C22 | H12 | sing | 1.08Å | 1.08Å | |
C23 | H13 | sing | 1.08Å | 1.08Å | |
C24 | H14 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O01 | C02 | C03 | 120.1° | 120.0° |
O01 | C02 | C24 | 119.7° | 119.9° |
C02 | O01 | H1 | 109.5° | 114.0° |
C08 | C09 | C10 | 119.9° | 120.3° |
C09 | C08 | C07 | 120.1° | 120.0° |
C09 | C08 | H4 | 120.0° | 120.1° |
C08 | C09 | H5 | 120.0° | 119.9° |
C09 | C10 | O11 | 120.6° | 119.9° |
C09 | C10 | C12 | 120.1° | 120.2° |
C10 | C09 | H5 | 120.1° | 119.9° |
C02 | C03 | C04 | 120.0° | 120.1° |
C03 | C02 | C24 | 120.1° | 120.1° |
C02 | C03 | H2 | 120.0° | 119.9° |
C03 | C04 | C05 | 119.8° | 119.9° |
C04 | C03 | H2 | 120.0° | 120.0° |
C03 | C04 | H3 | 120.1° | 120.1° |
O11 | C10 | C12 | 119.2° | 119.9° |
C10 | O11 | H6 | 109.5° | 114.0° |
C02 | C24 | C23 | 119.9° | 120.1° |
C02 | C24 | H14 | 120.1° | 119.9° |
C08 | C07 | C06 | 119.8° | 120.1° |
C08 | C07 | C13 | 119.7° | 119.7° |
C07 | C08 | H4 | 119.9° | 120.0° |
C10 | C12 | C13 | 120.1° | 120.0° |
C10 | C12 | H7 | 120.0° | 120.0° |
C04 | C05 | C23 | 120.1° | 119.8° |
C04 | C05 | C06 | 120.6° | 120.1° |
C05 | C04 | H3 | 120.1° | 120.0° |
C24 | C23 | C05 | 120.0° | 119.9° |
C24 | C23 | H13 | 120.0° | 120.0° |
C23 | C24 | H14 | 120.0° | 120.0° |
C23 | C05 | C06 | 119.2° | 120.1° |
C05 | C23 | H13 | 120.0° | 120.0° |
C05 | C06 | C07 | 119.0° | 120.0° |
C05 | C06 | N15 | 121.7° | 120.0° |
C06 | C07 | C13 | 120.5° | 120.1° |
C07 | C06 | N15 | 119.2° | 120.0° |
C07 | C13 | C12 | 120.1° | 119.8° |
C07 | C13 | O14 | 121.9° | 120.1° |
C12 | C13 | O14 | 118.0° | 120.1° |
C13 | C12 | H7 | 119.9° | 120.0° |
C06 | N15 | C16 | 126.3° | 120.0° |
C13 | O14 | H8 | 109.5° | 114.0° |
N15 | C16 | C17 | 119.0° | 120.2° |
N15 | C16 | C22 | 121.3° | 120.1° |
C17 | C16 | C22 | 119.7° | 119.7° |
C16 | C17 | C18 | 120.1° | 119.9° |
C16 | C17 | H9 | 120.0° | 120.0° |
C16 | C22 | C21 | 120.2° | 119.8° |
C16 | C22 | H12 | 119.9° | 120.1° |
C17 | C18 | C19 | 120.1° | 120.1° |
C18 | C17 | H9 | 119.9° | 120.1° |
C17 | C18 | H10 | 120.0° | 119.9° |
C22 | C21 | C19 | 120.0° | 120.2° |
C22 | C21 | H11 | 120.0° | 119.9° |
C21 | C22 | H12 | 119.9° | 120.1° |
C18 | C19 | C21 | 119.9° | 120.3° |
C18 | C19 | F20 | 120.0° | 119.8° |
C19 | C18 | H10 | 120.0° | 120.0° |
C21 | C19 | F20 | 120.0° | 119.9° |
C19 | C21 | H11 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O01 | C02 | C03 | C24 | 180.0° | 179.7° |
O01 | C02 | C03 | C04 | 179.9° | 180.0° |
O01 | C02 | C24 | C23 | 180.0° | 179.8° |
O01 | C02 | C03 | H2 | 0.1° | 0.0° |
O01 | C02 | C24 | H14 | 0.0° | 0.1° |
C08 | C09 | C10 | H5 | 180.0° | 179.9° |
C08 | C09 | C10 | O11 | 180.0° | 180.0° |
C09 | C08 | C07 | H4 | 180.0° | 180.0° |
C08 | C09 | C10 | C12 | 0.1° | 0.0° |
C09 | C08 | C07 | C06 | 179.7° | 180.0° |
C09 | C08 | C07 | C13 | 0.5° | 0.3° |
C09 | C10 | O11 | C12 | 179.8° | 180.0° |
C10 | C09 | C08 | C07 | 0.2° | 0.0° |
C09 | C10 | C12 | C13 | 0.2° | 0.3° |
C10 | C09 | C08 | H4 | 179.8° | 180.0° |
C09 | C10 | O11 | H6 | 180.0° | 89.9° |
C09 | C10 | C12 | H7 | 179.8° | 179.9° |
C02 | C03 | C04 | H2 | 180.0° | 180.0° |
C02 | C03 | C04 | C05 | 0.0° | 0.0° |
C03 | C02 | C24 | C23 | 0.0° | 0.5° |
C03 | C02 | O01 | H1 | 180.0° | 89.6° |
C02 | C03 | C04 | H3 | 180.0° | 179.9° |
C03 | C02 | C24 | H14 | 180.0° | 179.7° |
C04 | C03 | C02 | C24 | 0.1° | 0.3° |
C03 | C04 | C05 | H3 | 180.0° | 179.9° |
C03 | C04 | C05 | C23 | 0.2° | 0.0° |
C03 | C04 | C05 | C06 | 179.6° | 180.0° |
O11 | C10 | C12 | C13 | 180.0° | 179.7° |
O11 | C10 | C09 | H5 | 0.1° | 0.0° |
O11 | C10 | C12 | H7 | 0.0° | 0.1° |
C02 | C24 | C23 | H14 | 180.0° | 179.8° |
C02 | C24 | C23 | C05 | 0.2° | 0.5° |
C24 | C02 | O01 | H1 | 0.0° | 90.1° |
C24 | C02 | C03 | H2 | 179.9° | 179.7° |
C02 | C24 | C23 | H13 | 179.8° | 179.7° |
C08 | C07 | C06 | C05 | 17.1° | 6.0° |
C08 | C07 | C06 | C13 | 179.2° | 179.7° |
C08 | C07 | C13 | C12 | 0.5° | 0.5° |
C08 | C07 | C06 | N15 | 163.7° | 174.0° |
C08 | C07 | C13 | O14 | 179.8° | 179.7° |
C07 | C08 | C09 | H5 | 179.8° | 180.0° |
C10 | C12 | C13 | C07 | 0.1° | 0.5° |
C10 | C12 | C13 | H7 | 180.0° | 179.7° |
C10 | C12 | C13 | O14 | 179.9° | 179.7° |
C12 | C10 | C09 | H5 | 179.9° | 180.0° |
C12 | C10 | O11 | H6 | 0.2° | 90.1° |
C04 | C05 | C23 | C24 | 0.3° | 0.3° |
C04 | C05 | C23 | C06 | 179.4° | 180.0° |
C04 | C05 | C06 | C07 | 116.3° | 135.9° |
C04 | C05 | C06 | N15 | 64.5° | 44.2° |
C05 | C04 | C03 | H2 | 180.0° | 180.0° |
C04 | C05 | C23 | H13 | 179.7° | 180.0° |
C24 | C23 | C05 | H13 | 180.0° | 179.8° |
C24 | C23 | C05 | C06 | 179.7° | 179.7° |
C23 | C05 | C06 | C07 | 64.3° | 44.1° |
C23 | C05 | C06 | N15 | 114.9° | 135.8° |
C23 | C05 | C04 | H3 | 179.8° | 179.9° |
C05 | C23 | C24 | H14 | 179.7° | 179.7° |
C05 | C06 | C07 | N15 | 179.2° | 180.0° |
C05 | C06 | C07 | C13 | 162.1° | 173.7° |
C05 | C06 | N15 | C16 | 0.2° | 6.7° |
C06 | C05 | C04 | H3 | 0.4° | 0.1° |
C06 | C05 | C23 | H13 | 0.3° | 0.1° |
C06 | C07 | C13 | C12 | 179.6° | 179.8° |
C06 | C07 | C13 | O14 | 0.6° | 0.0° |
C07 | C06 | N15 | C16 | 179.4° | 173.3° |
C06 | C07 | C08 | H4 | 0.3° | 0.1° |
C07 | C13 | C12 | O14 | 179.8° | 179.8° |
C13 | C07 | C06 | N15 | 17.1° | 6.3° |
C13 | C07 | C08 | H4 | 179.5° | 179.8° |
C07 | C13 | C12 | H7 | 179.9° | 179.8° |
C07 | C13 | O14 | H8 | 180.0° | 90.0° |
C12 | C13 | O14 | H8 | 0.2° | 89.8° |
C06 | N15 | C16 | C17 | 131.3° | 122.8° |
C06 | N15 | C16 | C22 | 50.4° | 57.5° |
O14 | C13 | C12 | H7 | 0.1° | 0.0° |
N15 | C16 | C17 | C22 | 178.3° | 179.7° |
N15 | C16 | C17 | C18 | 179.3° | 180.0° |
N15 | C16 | C22 | C21 | 179.6° | 179.7° |
N15 | C16 | C17 | H9 | 0.7° | 0.0° |
N15 | C16 | C22 | H12 | 0.4° | 0.0° |
C16 | C17 | C18 | H9 | 180.0° | 180.0° |
C17 | C16 | C22 | C21 | 1.3° | 0.6° |
C16 | C17 | C18 | C19 | 0.4° | 0.0° |
C16 | C17 | C18 | H10 | 179.6° | 180.0° |
C17 | C16 | C22 | H12 | 178.7° | 179.7° |
C22 | C16 | C17 | C18 | 1.0° | 0.2° |
C16 | C22 | C21 | H12 | 180.0° | 179.7° |
C16 | C22 | C21 | C19 | 0.9° | 0.6° |
C22 | C16 | C17 | H9 | 179.0° | 179.7° |
C16 | C22 | C21 | H11 | 179.1° | 179.7° |
C17 | C18 | C19 | H10 | 180.0° | 179.9° |
C17 | C18 | C19 | C21 | 0.0° | 0.0° |
C17 | C18 | C19 | F20 | 180.0° | 180.0° |
C22 | C21 | C19 | C18 | 0.3° | 0.3° |
C22 | C21 | C19 | H11 | 180.0° | 179.7° |
C22 | C21 | C19 | F20 | 179.8° | 179.7° |
C18 | C19 | C21 | F20 | 180.0° | 180.0° |
C19 | C18 | C17 | H9 | 179.6° | 180.0° |
C18 | C19 | C21 | H11 | 179.8° | 180.0° |
C21 | C19 | C18 | H10 | 180.0° | 179.9° |
C19 | C21 | C22 | H12 | 179.1° | 179.7° |
F20 | C19 | C18 | H10 | 0.0° | 0.0° |
F20 | C19 | C21 | H11 | 0.2° | 0.0° |
H2 | C03 | C04 | H3 | 0.0° | 0.1° |
H4 | C08 | C09 | H5 | 0.2° | 0.0° |
H9 | C17 | C18 | H10 | 0.4° | 0.1° |
H11 | C21 | C22 | H12 | 0.9° | 0.0° |
H13 | C23 | C24 | H14 | 0.2° | 0.1° |