5ID
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| O5' | H5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.56Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.55Å | 1.55Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.48Å | |
| C1' | N9 | sing | 1.47Å | 1.54Å | |
| C1' | C2' | sing | 1.54Å | 1.55Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N9 | C8 | sing | 1.37Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
| C8 | C7 | doub | 1.34Å | 1.34Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| C7 | C5 | sing | 1.46Å | 1.40Å | Aromatic |
| C7 | IAE | sing | 2.09Å | 2.14Å | |
| C5 | C6 | doub | 1.40Å | 1.40Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.39Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.34Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.35Å | |
| N1 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.32Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
| N6 | H6N1 | sing | 0.97Å | 1.02Å | |
| N6 | H6N2 | sing | 0.97Å | 1.02Å | |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | HA | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HB | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | H5' | 111.0° | 106.8° |
| O5' | C5' | C4' | 111.0° | 109.5° |
| O5' | C5' | H5'1 | 111.7° | 109.4° |
| O5' | C5' | H5'2 | 111.7° | 109.5° |
| C4' | C5' | H5'1 | 111.7° | 109.5° |
| C4' | C5' | H5'2 | 111.6° | 109.5° |
| C5' | C4' | O4' | 105.9° | 110.4° |
| C5' | C4' | C3' | 112.3° | 110.5° |
| C5' | C4' | H4' | 111.0° | 110.4° |
| H5'1 | C5' | H5'2 | 98.7° | 109.5° |
| O4' | C4' | C3' | 105.5° | 104.7° |
| O4' | C4' | H4' | 111.0° | 110.4° |
| C4' | O4' | C1' | 109.5° | 105.3° |
| C3' | C4' | H4' | 111.0° | 110.3° |
| C4' | C3' | C2' | 104.4° | 104.1° |
| C4' | C3' | O3' | 111.9° | 110.5° |
| C4' | C3' | H3' | 109.0° | 110.5° |
| O4' | C1' | N9 | 111.2° | 110.4° |
| O4' | C1' | C2' | 108.0° | 104.9° |
| O4' | C1' | H1' | 109.9° | 110.4° |
| N9 | C1' | C2' | 107.7° | 110.4° |
| N9 | C1' | H1' | 109.9° | 110.3° |
| C1' | N9 | C8 | 123.5° | 125.0° |
| C1' | N9 | C4 | 128.0° | 125.0° |
| C2' | C1' | H1' | 110.0° | 110.4° |
| C1' | C2' | O2' | 111.7° | 110.8° |
| C1' | C2' | C3' | 102.3° | 104.0° |
| C1' | C2' | H2' | 109.4° | 110.4° |
| C8 | N9 | C4 | 108.5° | 110.0° |
| N9 | C8 | C7 | 108.9° | 109.8° |
| N9 | C8 | H8 | 125.5° | 125.1° |
| N9 | C4 | C5 | 109.0° | 107.1° |
| N9 | C4 | N3 | 132.3° | 134.3° |
| C7 | C8 | H8 | 125.6° | 125.1° |
| C8 | C7 | C5 | 109.4° | 106.8° |
| C8 | C7 | IAE | 123.0° | 126.6° |
| C5 | C7 | IAE | 127.6° | 126.6° |
| C7 | C5 | C6 | 136.4° | 135.1° |
| C7 | C5 | C4 | 104.1° | 106.2° |
| C6 | C5 | C4 | 119.5° | 118.6° |
| C5 | C6 | N1 | 117.9° | 118.4° |
| C5 | C6 | N6 | 123.3° | 120.8° |
| C5 | C4 | N3 | 118.7° | 118.5° |
| N1 | C6 | N6 | 118.8° | 120.8° |
| C6 | N1 | C2 | 121.1° | 121.0° |
| C6 | N6 | H6N1 | 123.3° | 120.0° |
| C6 | N6 | H6N2 | 118.8° | 120.0° |
| N1 | C2 | N3 | 122.2° | 122.7° |
| N1 | C2 | H2 | 118.9° | 118.6° |
| N3 | C2 | H2 | 118.9° | 118.6° |
| C2 | N3 | C4 | 120.7° | 120.7° |
| H6N1 | N6 | H6N2 | 117.9° | 120.0° |
| O2' | C2' | C3' | 114.4° | 110.5° |
| O2' | C2' | H2' | 109.4° | 110.4° |
| C2' | O2' | HA | 114.4° | 106.9° |
| C3' | C2' | H2' | 109.4° | 110.5° |
| C2' | C3' | O3' | 113.5° | 110.6° |
| C2' | C3' | H3' | 108.9° | 110.6° |
| O3' | C3' | H3' | 109.0° | 110.4° |
| C3' | O3' | HB | 111.9° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 117.6° | 120.0° |
| O5' | C5' | C4' | O4' | 71.2° | 66.5° |
| O5' | C5' | C4' | C3' | 43.4° | 178.1° |
| O5' | C5' | C4' | H4' | 168.2° | 55.8° |
| H5' | O5' | C5' | C4' | 180.0° | 180.0° |
| H5' | O5' | C5' | H5'1 | 54.7° | 60.0° |
| H5' | O5' | C5' | H5'2 | 54.7° | 59.9° |
| C4' | C5' | H5'1 | H5'2 | 117.5° | 120.0° |
| C5' | C4' | O4' | C3' | 119.2° | 118.9° |
| C5' | C4' | O4' | H4' | 120.5° | 122.3° |
| C5' | C4' | C3' | H4' | 124.9° | 122.4° |
| C5' | C4' | O4' | C1' | 145.2° | 159.5° |
| C5' | C4' | C3' | C2' | 148.0° | 142.9° |
| C5' | C4' | C3' | O3' | 88.8° | 98.3° |
| C5' | C4' | C3' | H3' | 31.8° | 24.2° |
| H5'1 | C5' | C4' | O4' | 54.0° | 173.5° |
| H5'1 | C5' | C4' | C3' | 168.7° | 58.2° |
| H5'1 | C5' | C4' | H4' | 66.5° | 64.2° |
| H5'2 | C5' | C4' | O4' | 163.5° | 53.5° |
| H5'2 | C5' | C4' | C3' | 81.9° | 61.9° |
| H5'2 | C5' | C4' | H4' | 43.0° | 175.8° |
| O4' | C4' | C3' | H4' | 120.3° | 118.8° |
| C4' | O4' | C1' | N9 | 126.8° | 159.4° |
| C4' | O4' | C1' | C2' | 8.8° | 40.5° |
| C4' | O4' | C1' | H1' | 111.2° | 78.4° |
| O4' | C4' | C3' | C2' | 33.2° | 24.1° |
| O4' | C4' | C3' | O3' | 156.3° | 142.8° |
| O4' | C4' | C3' | H3' | 83.1° | 94.7° |
| C3' | C4' | O4' | C1' | 26.0° | 40.5° |
| C4' | C3' | C2' | C1' | 26.6° | 0.1° |
| C4' | C3' | C2' | O2' | 94.4° | 118.8° |
| C4' | C3' | C2' | O3' | 122.1° | 118.7° |
| C4' | C3' | C2' | H3' | 116.3° | 118.7° |
| C4' | C3' | C2' | H2' | 142.5° | 118.6° |
| C4' | C3' | O3' | H3' | 120.6° | 122.5° |
| C4' | C3' | O3' | HB | 180.0° | 61.4° |
| H4' | C4' | O4' | C1' | 94.3° | 78.2° |
| H4' | C4' | C3' | C2' | 87.1° | 94.7° |
| H4' | C4' | C3' | O3' | 36.0° | 24.0° |
| H4' | C4' | C3' | H3' | 156.6° | 146.5° |
| O4' | C1' | N9 | C2' | 118.2° | 115.5° |
| O4' | C1' | N9 | H1' | 122.0° | 122.2° |
| O4' | C1' | C2' | H1' | 120.0° | 118.9° |
| O4' | C1' | N9 | C8 | 28.9° | 22.1° |
| O4' | C1' | N9 | C4 | 152.3° | 158.0° |
| O4' | C1' | C2' | O2' | 110.8° | 142.6° |
| O4' | C1' | C2' | C3' | 12.0° | 23.9° |
| O4' | C1' | C2' | H2' | 127.9° | 94.7° |
| N9 | C1' | C2' | H1' | 119.8° | 122.3° |
| C1' | N9 | C8 | C4 | 179.0° | 180.0° |
| C1' | N9 | C8 | C7 | 179.5° | 180.0° |
| C1' | N9 | C8 | H8 | 0.4° | 0.1° |
| C1' | N9 | C4 | C5 | 179.0° | 179.8° |
| C1' | N9 | C4 | N3 | 1.9° | 0.0° |
| N9 | C1' | C2' | O2' | 129.0° | 98.5° |
| N9 | C1' | C2' | C3' | 108.2° | 142.7° |
| N9 | C1' | C2' | H2' | 7.7° | 24.2° |
| C2' | C1' | N9 | C8 | 89.3° | 93.4° |
| C2' | C1' | N9 | C4 | 89.5° | 86.5° |
| C1' | C2' | O2' | C3' | 115.6° | 114.7° |
| C1' | C2' | O2' | H2' | 121.3° | 122.7° |
| C1' | C2' | C3' | H2' | 115.9° | 118.5° |
| C1' | C2' | O2' | HA | 64.4° | 176.1° |
| C1' | C2' | C3' | O3' | 148.7° | 118.8° |
| C1' | C2' | C3' | H3' | 89.7° | 118.6° |
| H1' | C1' | N9 | C8 | 150.9° | 144.3° |
| H1' | C1' | N9 | C4 | 30.3° | 35.7° |
| H1' | C1' | C2' | O2' | 9.2° | 23.7° |
| H1' | C1' | C2' | C3' | 132.0° | 95.0° |
| H1' | C1' | C2' | H2' | 112.1° | 146.4° |
| N9 | C8 | C7 | H8 | 180.0° | 179.9° |
| N9 | C8 | C7 | C5 | 0.8° | 0.3° |
| N9 | C8 | C7 | IAE | 179.9° | 180.0° |
| C8 | N9 | C4 | C5 | 0.0° | 0.2° |
| C8 | N9 | C4 | N3 | 179.2° | 180.0° |
| C4 | N9 | C8 | C7 | 0.5° | 0.0° |
| C4 | N9 | C8 | H8 | 179.5° | 179.9° |
| N9 | C4 | C5 | C7 | 0.4° | 0.4° |
| N9 | C4 | C5 | C6 | 179.9° | 179.7° |
| N9 | C4 | C5 | N3 | 179.2° | 179.8° |
| N9 | C4 | N3 | C2 | 179.1° | 180.0° |
| C8 | C7 | C5 | IAE | 179.2° | 179.7° |
| C8 | C7 | C5 | C6 | 179.7° | 179.5° |
| C8 | C7 | C5 | C4 | 0.8° | 0.4° |
| H8 | C8 | C7 | C5 | 179.2° | 179.8° |
| H8 | C8 | C7 | IAE | 0.1° | 0.1° |
| C7 | C5 | C6 | C4 | 179.5° | 179.1° |
| C7 | C5 | C6 | N1 | 179.7° | 179.6° |
| C7 | C5 | C6 | N6 | 0.4° | 0.7° |
| C7 | C5 | C4 | N3 | 178.8° | 179.8° |
| IAE | C7 | C5 | C6 | 0.5° | 0.7° |
| IAE | C7 | C5 | C4 | 180.0° | 179.9° |
| C5 | C6 | N1 | N6 | 179.9° | 179.7° |
| C5 | C6 | N1 | C2 | 1.4° | 0.3° |
| C6 | C5 | C4 | N3 | 0.9° | 0.5° |
| C5 | C6 | N6 | H6N1 | 180.0° | 179.7° |
| C5 | C6 | N6 | H6N2 | 0.2° | 0.6° |
| C4 | C5 | C6 | N1 | 0.7° | 0.5° |
| C4 | C5 | C6 | N6 | 179.1° | 179.8° |
| C5 | C4 | N3 | C2 | 1.8° | 0.3° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| C6 | N1 | C2 | H2 | 179.6° | 180.0° |
| N1 | C6 | N6 | H6N1 | 0.2° | 0.1° |
| N1 | C6 | N6 | H6N2 | 180.0° | 179.7° |
| N6 | C6 | N1 | C2 | 178.5° | 180.0° |
| C6 | N6 | H6N1 | H6N2 | 179.8° | 179.6° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 1.3° | 0.0° |
| H2 | C2 | N3 | C4 | 178.8° | 180.0° |
| O2' | C2' | C3' | H2' | 123.1° | 122.5° |
| O2' | C2' | C3' | O3' | 27.7° | 0.1° |
| O2' | C2' | C3' | H3' | 149.3° | 122.5° |
| C3' | C2' | O2' | HA | 180.0° | 61.4° |
| C2' | C3' | O3' | H3' | 121.6° | 122.7° |
| C2' | C3' | O3' | HB | 62.2° | 176.1° |
| H2' | C2' | O2' | HA | 56.9° | 61.2° |
| H2' | C2' | C3' | O3' | 95.4° | 122.7° |
| H2' | C2' | C3' | H3' | 26.2° | 0.0° |
| H3' | C3' | O3' | HB | 59.4° | 61.1° |
