5IC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2' | C2' | sing | 1.42Å | 40.68Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C2' | C3' | sing | 1.51Å | 1.53Å | |
C2' | C1' | sing | 1.52Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.53Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C5' | sing | 1.52Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.43Å | 1.40Å | |
C1' | N1 | sing | 1.43Å | 1.47Å | |
C1' | H1' | sing | 1.10Å | 1.12Å | |
N1 | C6 | sing | 1.39Å | 1.37Å | |
N1 | C2 | sing | 1.42Å | 1.40Å | |
C6 | C5 | doub | 1.34Å | 1.35Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C5 | I | sing | 2.04Å | 2.10Å | |
C5 | C4 | sing | 1.50Å | 1.44Å | |
C4 | N3 | doub | 1.31Å | 1.34Å | |
C4 | N4 | sing | 1.38Å | 1.32Å | |
N3 | C2 | sing | 1.38Å | 1.35Å | |
C2 | O2 | doub | 1.23Å | 1.25Å | |
N4 | H41 | sing | 0.99Å | 1.02Å | |
N4 | H42 | sing | 0.99Å | 1.02Å | |
C5' | O5' | sing | 1.42Å | 1.42Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
O5' | P | sing | 1.62Å | 1.59Å | |
P | OP1 | doub | 1.50Å | 1.50Å | |
P | OP3 | sing | 1.62Å | 38.16Å | |
P | OP2 | sing | 1.62Å | 1.48Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2' | O2' | HO2' | 63.2° | 106.7° |
O2' | C2' | C3' | 63.2° | 108.6° |
O2' | C2' | C1' | 45.1° | 111.3° |
O2' | C2' | H2' | 166.8° | 108.6° |
C3' | C2' | C1' | 101.7° | 101.6° |
C3' | C2' | H2' | 124.2° | 114.5° |
C2' | C3' | O3' | 112.9° | 109.3° |
C2' | C3' | C4' | 104.2° | 103.5° |
C2' | C3' | H3' | 110.3° | 114.4° |
C1' | C2' | H2' | 132.8° | 112.1° |
C2' | C1' | O4' | 104.5° | 106.3° |
C2' | C1' | N1 | 116.2° | 114.2° |
C2' | C1' | H1' | 107.8° | 111.1° |
O3' | C3' | C4' | 108.1° | 108.3° |
O3' | C3' | H3' | 106.6° | 108.2° |
C3' | O3' | HO3' | 112.9° | 106.5° |
C4' | C3' | H3' | 114.9° | 112.9° |
C3' | C4' | O4' | 105.9° | 107.0° |
C3' | C4' | C5' | 112.4° | 113.4° |
C3' | C4' | H4' | 110.0° | 111.8° |
O4' | C4' | C5' | 109.6° | 107.8° |
O4' | C4' | H4' | 112.8° | 107.6° |
C4' | O4' | C1' | 107.9° | 108.7° |
C5' | C4' | H4' | 106.3° | 108.9° |
C4' | C5' | O5' | 109.6° | 108.7° |
C4' | C5' | H5' | 112.2° | 110.2° |
C4' | C5' | H5'' | 112.2° | 110.2° |
O4' | C1' | N1 | 107.4° | 109.8° |
O4' | C1' | H1' | 116.5° | 107.4° |
N1 | C1' | H1' | 104.9° | 107.7° |
C1' | N1 | C6 | 121.8° | 120.5° |
C1' | N1 | C2 | 118.0° | 120.5° |
C6 | N1 | C2 | 120.2° | 119.0° |
N1 | C6 | C5 | 120.9° | 123.4° |
N1 | C6 | H6 | 120.5° | 114.7° |
N1 | C2 | N3 | 119.8° | 118.9° |
N1 | C2 | O2 | 118.3° | 120.8° |
C5 | C6 | H6 | 118.7° | 121.9° |
C6 | C5 | I | 120.5° | 122.7° |
C6 | C5 | C4 | 117.4° | 115.7° |
I | C5 | C4 | 122.0° | 121.6° |
C5 | C4 | N3 | 121.6° | 121.4° |
C5 | C4 | N4 | 120.7° | 120.3° |
N3 | C4 | N4 | 117.7° | 118.4° |
C4 | N3 | C2 | 120.2° | 121.6° |
C4 | N4 | H41 | 108.2° | 117.9° |
C4 | N4 | H42 | 120.7° | 117.9° |
N3 | C2 | O2 | 121.9° | 120.2° |
H41 | N4 | H42 | 108.2° | 124.1° |
O5' | C5' | H5' | 112.1° | 109.1° |
O5' | C5' | H5'' | 112.1° | 109.1° |
C5' | O5' | P | 119.8° | 118.5° |
H5' | C5' | H5'' | 98.3° | 109.5° |
O5' | P | OP1 | 107.5° | 115.0° |
O5' | P | OP3 | 107.1° | 103.7° |
O5' | P | OP2 | 107.8° | 102.9° |
OP1 | P | OP3 | 132.7° | 115.3° |
OP1 | P | OP2 | 119.5° | 115.0° |
OP3 | P | OP2 | 78.1° | 103.3° |
P | OP3 | HOP3 | 107.2° | 118.9° |
P | OP2 | HOP2 | 107.8° | 118.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2' | C2' | C3' | C1' | 24.1° | 117.4° |
O2' | C2' | C3' | H2' | 167.4° | 121.5° |
O2' | C2' | C1' | H2' | 161.9° | 121.9° |
O2' | C2' | C3' | O3' | 116.2° | 160.5° |
O2' | C2' | C3' | C4' | 0.8° | 84.2° |
O2' | C2' | C3' | H3' | 124.7° | 39.0° |
O2' | C2' | C1' | O4' | 7.9° | 80.5° |
O2' | C2' | C1' | N1 | 126.1° | 40.7° |
O2' | C2' | C1' | H1' | 116.6° | 162.9° |
HO2' | O2' | C2' | C3' | 180.0° | 7.8° |
HO2' | O2' | C2' | C1' | 34.4° | 118.9° |
HO2' | O2' | C2' | H2' | 52.4° | 117.2° |
C3' | C2' | C1' | H2' | 167.1° | 122.7° |
C2' | C3' | O3' | C4' | 114.7° | 112.1° |
C2' | C3' | O3' | H3' | 121.3° | 125.2° |
C2' | C3' | C4' | H3' | 120.8° | 124.2° |
C2' | C3' | O3' | HO3' | 180.0° | 36.4° |
C2' | C3' | C4' | O4' | 3.6° | 21.1° |
C2' | C3' | C4' | C5' | 116.0° | 97.7° |
C2' | C3' | C4' | H4' | 125.7° | 138.7° |
C3' | C2' | C1' | O4' | 38.9° | 34.9° |
C3' | C2' | C1' | N1 | 157.1° | 156.1° |
C3' | C2' | C1' | H1' | 85.7° | 81.7° |
C1' | C2' | C3' | O3' | 92.1° | 82.1° |
C1' | C2' | C3' | C4' | 24.9° | 33.2° |
C1' | C2' | C3' | H3' | 148.8° | 156.4° |
C2' | C1' | O4' | C4' | 38.4° | 22.6° |
C2' | C1' | O4' | N1 | 124.0° | 124.0° |
C2' | C1' | O4' | H1' | 118.8° | 119.1° |
C2' | C1' | N1 | H1' | 118.9° | 124.0° |
C2' | C1' | N1 | C6 | 43.0° | 86.0° |
C2' | C1' | N1 | C2 | 137.7° | 94.0° |
H2' | C2' | C3' | O3' | 76.4° | 39.0° |
H2' | C2' | C3' | C4' | 166.6° | 154.2° |
H2' | C2' | C3' | H3' | 42.7° | 82.6° |
H2' | C2' | C1' | O4' | 154.0° | 157.6° |
H2' | C2' | C1' | N1 | 35.9° | 81.2° |
H2' | C2' | C1' | H1' | 81.4° | 41.0° |
O3' | C3' | C4' | H3' | 118.9° | 119.8° |
O3' | C3' | C4' | O4' | 116.7° | 94.9° |
O3' | C3' | C4' | C5' | 123.7° | 146.4° |
O3' | C3' | C4' | H4' | 5.5° | 22.7° |
C4' | C3' | O3' | HO3' | 65.3° | 75.7° |
C3' | C4' | O4' | C5' | 121.5° | 122.3° |
C3' | C4' | O4' | H4' | 120.3° | 120.3° |
C3' | C4' | C5' | H4' | 120.4° | 125.3° |
C3' | C4' | O4' | C1' | 21.6° | 0.8° |
C3' | C4' | C5' | O5' | 49.8° | 179.5° |
C3' | C4' | C5' | H5' | 75.5° | 59.9° |
C3' | C4' | C5' | H5'' | 175.0° | 61.0° |
H3' | C3' | O3' | HO3' | 58.7° | 161.6° |
H3' | C3' | C4' | O4' | 124.5° | 145.3° |
H3' | C3' | C4' | C5' | 4.8° | 26.6° |
H3' | C3' | C4' | H4' | 113.4° | 97.1° |
O4' | C4' | C5' | H4' | 122.1° | 116.5° |
C4' | O4' | C1' | N1 | 162.4° | 146.6° |
C4' | O4' | C1' | H1' | 80.4° | 96.5° |
O4' | C4' | C5' | O5' | 67.7° | 61.2° |
O4' | C4' | C5' | H5' | 167.0° | 58.3° |
O4' | C4' | C5' | H5'' | 57.5° | 179.2° |
C5' | C4' | O4' | C1' | 143.1° | 123.1° |
C4' | C5' | O5' | H5' | 125.3° | 120.2° |
C4' | C5' | O5' | H5'' | 125.2° | 120.2° |
C4' | C5' | H5' | H5'' | 118.1° | 121.3° |
C4' | C5' | O5' | P | 169.2° | 180.0° |
H4' | C4' | O4' | C1' | 98.7° | 119.5° |
H4' | C4' | C5' | O5' | 170.1° | 55.3° |
H4' | C4' | C5' | H5' | 44.9° | 174.8° |
H4' | C4' | C5' | H5'' | 64.6° | 64.3° |
O4' | C1' | N1 | H1' | 124.5° | 116.7° |
O4' | C1' | N1 | C6 | 73.6° | 33.3° |
O4' | C1' | N1 | C2 | 105.7° | 146.7° |
C1' | N1 | C6 | C2 | 179.3° | 180.0° |
C1' | N1 | C6 | C5 | 179.0° | 179.9° |
C1' | N1 | C6 | H6 | 1.0° | 0.0° |
C1' | N1 | C2 | N3 | 179.4° | 179.9° |
C1' | N1 | C2 | O2 | 0.9° | 0.0° |
H1' | C1' | N1 | C6 | 161.9° | 150.0° |
H1' | C1' | N1 | C2 | 18.8° | 30.0° |
N1 | C6 | C5 | H6 | 180.0° | 179.9° |
N1 | C6 | C5 | I | 174.1° | 180.0° |
N1 | C6 | C5 | C4 | 1.7° | 0.0° |
C6 | N1 | C2 | N3 | 1.3° | 0.1° |
C6 | N1 | C2 | O2 | 178.4° | 180.0° |
C2 | N1 | C6 | C5 | 0.3° | 0.0° |
C2 | N1 | C6 | H6 | 179.7° | 180.0° |
N1 | C2 | N3 | C4 | 1.3° | 0.1° |
N1 | C2 | N3 | O2 | 179.7° | 179.9° |
C6 | C5 | I | C4 | 175.6° | 180.0° |
C6 | C5 | C4 | N3 | 1.8° | 0.0° |
C6 | C5 | C4 | N4 | 177.4° | 179.9° |
H6 | C6 | C5 | I | 5.9° | 0.1° |
H6 | C6 | C5 | C4 | 178.2° | 179.9° |
I | C5 | C4 | N3 | 174.0° | 180.0° |
I | C5 | C4 | N4 | 6.9° | 0.1° |
C5 | C4 | N3 | N4 | 179.2° | 180.0° |
C5 | C4 | N3 | C2 | 0.2° | 0.0° |
C5 | C4 | N4 | H41 | 54.7° | 164.8° |
C5 | C4 | N4 | H42 | 180.0° | 15.3° |
C4 | N3 | C2 | O2 | 178.4° | 180.0° |
N3 | C4 | N4 | H41 | 124.5° | 15.2° |
N3 | C4 | N4 | H42 | 0.8° | 164.8° |
N4 | C4 | N3 | C2 | 178.9° | 180.0° |
C4 | N4 | H41 | H42 | 132.4° | 180.0° |
O5' | C5' | H5' | H5'' | 118.1° | 119.4° |
C5' | O5' | P | OP1 | 174.4° | 180.0° |
C5' | O5' | P | OP3 | 27.1° | 53.2° |
C5' | O5' | P | OP2 | 55.5° | 54.2° |
H5' | C5' | O5' | P | 65.5° | 59.8° |
H5'' | C5' | O5' | P | 44.0° | 59.8° |
O5' | P | OP1 | OP3 | 135.4° | 120.6° |
O5' | P | OP1 | OP2 | 123.1° | 119.3° |
O5' | P | OP3 | OP2 | 105.1° | 107.1° |
O5' | P | OP3 | HOP3 | 180.0° | 175.4° |
O5' | P | OP2 | HOP2 | 180.0° | 173.8° |
OP1 | P | OP3 | OP2 | 119.4° | 126.3° |
OP1 | P | OP3 | HOP3 | 44.5° | 48.8° |
OP1 | P | OP2 | HOP2 | 57.0° | 48.0° |
OP3 | P | OP2 | HOP2 | 75.6° | 78.5° |
OP2 | P | OP3 | HOP3 | 74.8° | 77.5° |