5HU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.60Å | |
| P | OP2 | sing | 1.61Å | 1.68Å | |
| P | OP3 | sing | 1.61Å | 1.66Å | |
| P | O5' | sing | 1.61Å | 1.56Å | |
| OP2 | HO2P | sing | 0.97Å | 0.95Å | |
| OP3 | HO3P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.37Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.57Å | |
| C4' | HC4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.50Å | |
| C3' | C2' | sing | 1.55Å | 1.56Å | |
| C3' | HC3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.48Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | HC1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.29Å | |
| C2 | N3 | sing | 1.35Å | 1.34Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.33Å | |
| C4 | C5 | sing | 1.42Å | 1.42Å | |
| C5 | C5A | sing | 1.51Å | 1.50Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5A | O5B | sing | 1.43Å | 1.05Å | |
| C5A | H5A1 | sing | 1.09Å | 1.10Å | |
| C5A | H5A2 | sing | 1.09Å | 1.10Å | |
| C6 | HC6 | sing | 1.08Å | 1.08Å | |
| O5B | HO5B | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 110.1° | 109.5° |
| OP1 | P | OP3 | 111.2° | 109.5° |
| OP1 | P | O5' | 110.4° | 109.4° |
| OP2 | P | OP3 | 108.6° | 109.5° |
| OP2 | P | O5' | 104.5° | 109.5° |
| P | OP2 | HO2P | 109.5° | 106.7° |
| OP3 | P | O5' | 111.9° | 109.5° |
| P | OP3 | HO3P | 109.5° | 106.8° |
| P | O5' | C5' | 132.2° | 106.8° |
| O5' | C5' | C4' | 105.7° | 109.5° |
| O5' | C5' | H5' | 111.5° | 109.4° |
| O5' | C5' | H5'' | 110.8° | 109.5° |
| C4' | C5' | H5' | 111.5° | 109.5° |
| C4' | C5' | H5'' | 110.7° | 109.5° |
| C5' | C4' | O4' | 118.8° | 110.8° |
| C5' | C4' | C3' | 122.1° | 110.6° |
| C5' | C4' | HC4' | 89.1° | 110.5° |
| H5' | C5' | H5'' | 106.6° | 109.4° |
| O4' | C4' | C3' | 98.8° | 103.6° |
| O4' | C4' | HC4' | 116.5° | 110.5° |
| C4' | O4' | C1' | 114.1° | 106.9° |
| C3' | C4' | HC4' | 112.7° | 110.6° |
| C4' | C3' | O3' | 123.7° | 111.0° |
| C4' | C3' | C2' | 95.6° | 102.1° |
| C4' | C3' | HC3' | 116.2° | 110.9° |
| O4' | C1' | C2' | 102.5° | 107.4° |
| O4' | C1' | N1 | 105.3° | 109.9° |
| O4' | C1' | HC1' | 120.9° | 109.9° |
| O3' | C3' | C2' | 122.6° | 110.9° |
| O3' | C3' | HC3' | 83.1° | 110.7° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C2' | C3' | HC3' | 117.5° | 110.9° |
| C3' | C2' | C1' | 102.7° | 104.2° |
| C3' | C2' | H2' | 113.2° | 110.5° |
| C3' | C2' | H2'' | 111.8° | 110.5° |
| C1' | C2' | H2' | 113.2° | 110.5° |
| C1' | C2' | H2'' | 111.8° | 110.5° |
| C2' | C1' | N1 | 120.5° | 109.9° |
| C2' | C1' | HC1' | 105.8° | 109.9° |
| H2' | C2' | H2'' | 104.3° | 110.5° |
| N1 | C1' | HC1' | 103.2° | 109.9° |
| C1' | N1 | C2 | 114.7° | 119.7° |
| C1' | N1 | C6 | 125.2° | 119.7° |
| C2 | N1 | C6 | 120.1° | 120.6° |
| N1 | C2 | O2 | 120.0° | 119.5° |
| N1 | C2 | N3 | 121.4° | 121.0° |
| N1 | C6 | C5 | 119.8° | 119.7° |
| N1 | C6 | HC6 | 120.1° | 120.2° |
| O2 | C2 | N3 | 118.6° | 119.5° |
| C2 | N3 | C4 | 120.0° | 120.3° |
| C2 | N3 | HN3 | 120.0° | 119.9° |
| C4 | N3 | HN3 | 120.0° | 119.8° |
| N3 | C4 | O4 | 117.9° | 120.3° |
| N3 | C4 | C5 | 121.0° | 119.4° |
| O4 | C4 | C5 | 121.1° | 120.3° |
| C4 | C5 | C5A | 119.3° | 120.5° |
| C4 | C5 | C6 | 117.7° | 119.1° |
| C5A | C5 | C6 | 123.0° | 120.4° |
| C5 | C5A | O5B | 104.7° | 109.5° |
| C5 | C5A | H5A1 | 112.1° | 109.5° |
| C5 | C5A | H5A2 | 111.1° | 109.4° |
| C5 | C6 | HC6 | 120.1° | 120.2° |
| O5B | C5A | H5A1 | 112.1° | 109.5° |
| O5B | C5A | H5A2 | 111.1° | 109.5° |
| C5A | O5B | HO5B | 109.5° | 106.8° |
| H5A1 | C5A | H5A2 | 105.8° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 121.9° | 120.1° |
| OP1 | P | OP2 | O5' | 118.5° | 120.0° |
| OP1 | P | OP3 | O5' | 123.9° | 120.0° |
| OP1 | P | OP2 | HO2P | 113.1° | 60.1° |
| OP1 | P | OP3 | HO3P | 167.6° | 180.0° |
| OP1 | P | O5' | C5' | 87.1° | 55.0° |
| OP2 | P | OP3 | O5' | 114.8° | 120.0° |
| OP2 | P | OP3 | HO3P | 71.2° | 59.9° |
| OP2 | P | O5' | C5' | 154.6° | 174.9° |
| OP3 | P | OP2 | HO2P | 125.0° | 60.0° |
| OP3 | P | O5' | C5' | 37.3° | 65.0° |
| O5' | P | OP2 | HO2P | 5.4° | 180.0° |
| O5' | P | OP3 | HO3P | 43.6° | 60.1° |
| P | O5' | C5' | C4' | 177.8° | 180.0° |
| P | O5' | C5' | H5' | 60.7° | 60.0° |
| P | O5' | C5' | H5'' | 57.9° | 59.9° |
| O5' | C5' | C4' | H5' | 121.4° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.1° |
| O5' | C5' | H5' | H5'' | 121.0° | 120.0° |
| O5' | C5' | C4' | O4' | 135.8° | 70.7° |
| O5' | C5' | C4' | C3' | 12.4° | 175.0° |
| O5' | C5' | C4' | HC4' | 104.1° | 52.1° |
| C4' | C5' | H5' | H5'' | 121.0° | 120.0° |
| C5' | C4' | O4' | C3' | 134.3° | 118.7° |
| C5' | C4' | O4' | HC4' | 104.8° | 122.8° |
| C5' | C4' | C3' | HC4' | 104.1° | 122.8° |
| C5' | C4' | O4' | C1' | 104.5° | 158.5° |
| C5' | C4' | C3' | O3' | 137.2° | 86.1° |
| C5' | C4' | C3' | C2' | 87.0° | 155.7° |
| C5' | C4' | C3' | HC3' | 37.5° | 37.5° |
| H5' | C5' | C4' | O4' | 14.4° | 169.3° |
| H5' | C5' | C4' | C3' | 109.0° | 55.0° |
| H5' | C5' | C4' | HC4' | 134.5° | 67.9° |
| H5'' | C5' | C4' | O4' | 104.2° | 49.3° |
| H5'' | C5' | C4' | C3' | 132.4° | 65.0° |
| H5'' | C5' | C4' | HC4' | 15.9° | 172.2° |
| O4' | C4' | C3' | HC4' | 123.7° | 118.4° |
| O4' | C4' | C3' | O3' | 90.6° | 155.2° |
| O4' | C4' | C3' | C2' | 45.2° | 36.9° |
| O4' | C4' | C3' | HC3' | 169.7° | 81.3° |
| C4' | O4' | C1' | C2' | 1.0° | 26.3° |
| C4' | O4' | C1' | N1 | 127.8° | 145.8° |
| C4' | O4' | C1' | HC1' | 116.2° | 93.2° |
| C3' | C4' | O4' | C1' | 29.8° | 39.9° |
| C4' | C3' | O3' | C2' | 124.6° | 112.8° |
| C4' | C3' | O3' | HC3' | 117.1° | 123.6° |
| C4' | C3' | C2' | HC3' | 123.5° | 118.2° |
| C4' | C3' | O3' | HO3' | 76.0° | 174.2° |
| C4' | C3' | C2' | C1' | 48.2° | 20.9° |
| C4' | C3' | C2' | H2' | 170.7° | 97.8° |
| C4' | C3' | C2' | H2'' | 71.8° | 139.5° |
| HC4' | C4' | O4' | C1' | 150.8° | 78.6° |
| HC4' | C4' | C3' | O3' | 33.1° | 36.7° |
| HC4' | C4' | C3' | C2' | 168.9° | 81.5° |
| HC4' | C4' | C3' | HC3' | 66.6° | 160.3° |
| O4' | C1' | C2' | C3' | 32.1° | 2.0° |
| O4' | C1' | C2' | N1 | 116.3° | 119.5° |
| O4' | C1' | C2' | HC1' | 127.5° | 119.5° |
| O4' | C1' | C2' | H2' | 154.6° | 120.6° |
| O4' | C1' | C2' | H2'' | 87.9° | 116.8° |
| O4' | C1' | N1 | HC1' | 127.6° | 121.0° |
| O4' | C1' | N1 | C2 | 116.3° | 53.3° |
| O4' | C1' | N1 | C6 | 63.9° | 126.7° |
| O3' | C3' | C2' | HC3' | 100.0° | 123.5° |
| O3' | C3' | C2' | C1' | 88.3° | 139.2° |
| O3' | C3' | C2' | H2' | 34.2° | 20.5° |
| O3' | C3' | C2' | H2'' | 151.7° | 102.2° |
| C2' | C3' | O3' | HO3' | 48.5° | 61.4° |
| C3' | C2' | C1' | H2' | 122.5° | 118.7° |
| C3' | C2' | C1' | H2'' | 120.0° | 118.7° |
| C3' | C2' | H2' | H2'' | 121.8° | 122.7° |
| C3' | C2' | C1' | N1 | 148.4° | 121.5° |
| C3' | C2' | C1' | HC1' | 95.4° | 117.5° |
| HC3' | C3' | O3' | HO3' | 166.9° | 62.2° |
| HC3' | C3' | C2' | C1' | 171.8° | 97.3° |
| HC3' | C3' | C2' | H2' | 65.8° | 144.0° |
| HC3' | C3' | C2' | H2'' | 51.7° | 21.3° |
| C1' | C2' | H2' | H2'' | 121.8° | 122.6° |
| C2' | C1' | N1 | HC1' | 117.5° | 121.0° |
| C2' | C1' | N1 | C2 | 128.8° | 64.7° |
| C2' | C1' | N1 | C6 | 51.0° | 115.3° |
| H2' | C2' | C1' | N1 | 89.1° | 119.9° |
| H2' | C2' | C1' | HC1' | 27.0° | 1.2° |
| H2'' | C2' | C1' | N1 | 28.4° | 2.7° |
| H2'' | C2' | C1' | HC1' | 144.6° | 123.8° |
| C1' | N1 | C2 | C6 | 179.8° | 180.0° |
| C1' | N1 | C2 | O2 | 0.4° | 0.1° |
| C1' | N1 | C2 | N3 | 179.6° | 179.9° |
| C1' | N1 | C6 | C5 | 179.7° | 180.0° |
| C1' | N1 | C6 | HC6 | 0.3° | 0.0° |
| HC1' | C1' | N1 | C2 | 11.3° | 174.3° |
| HC1' | C1' | N1 | C6 | 168.5° | 5.7° |
| N1 | C2 | O2 | N3 | 179.9° | 179.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.1° |
| C2 | N1 | C6 | HC6 | 179.9° | 180.0° |
| C6 | N1 | C2 | O2 | 179.9° | 180.0° |
| C6 | N1 | C2 | N3 | 0.2° | 0.1° |
| N1 | C6 | C5 | C4 | 0.1° | 0.2° |
| N1 | C6 | C5 | C5A | 179.8° | 180.0° |
| N1 | C6 | C5 | HC6 | 180.0° | 179.9° |
| O2 | C2 | N3 | C4 | 180.0° | 179.7° |
| O2 | C2 | N3 | HN3 | 0.0° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.4° |
| N3 | C4 | O4 | C5 | 180.0° | 179.6° |
| N3 | C4 | C5 | C5A | 179.7° | 179.8° |
| N3 | C4 | C5 | C6 | 0.2° | 0.4° |
| HN3 | N3 | C4 | O4 | 0.1° | 0.2° |
| HN3 | N3 | C4 | C5 | 179.9° | 179.8° |
| O4 | C4 | C5 | C5A | 0.2° | 0.2° |
| O4 | C4 | C5 | C6 | 179.8° | 180.0° |
| C4 | C5 | C5A | C6 | 179.9° | 179.8° |
| C4 | C5 | C5A | O5B | 91.3° | 179.8° |
| C4 | C5 | C5A | H5A1 | 30.5° | 59.7° |
| C4 | C5 | C5A | H5A2 | 148.7° | 60.2° |
| C4 | C5 | C6 | HC6 | 179.8° | 179.8° |
| C5 | C5A | O5B | H5A1 | 121.8° | 120.0° |
| C5 | C5A | O5B | H5A2 | 120.0° | 120.0° |
| C5 | C5A | H5A1 | H5A2 | 121.3° | 120.0° |
| C5A | C5 | C6 | HC6 | 0.2° | 0.0° |
| C5 | C5A | O5B | HO5B | 10.4° | 180.0° |
| C6 | C5 | C5A | O5B | 88.6° | 0.0° |
| C6 | C5 | C5A | H5A1 | 149.6° | 120.0° |
| C6 | C5 | C5A | H5A2 | 31.4° | 120.0° |
| O5B | C5A | H5A1 | H5A2 | 121.3° | 120.0° |
| H5A1 | C5A | O5B | HO5B | 132.2° | 60.0° |
| H5A2 | C5A | O5B | HO5B | 109.6° | 60.0° |
