5HM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N4 | C4 | sing | 1.38Å | 1.36Å | |
| C4 | N3 | doub | 1.33Å | 1.36Å | |
| C4 | C5 | sing | 1.41Å | 1.49Å | |
| N3 | C2 | sing | 1.33Å | 1.35Å | |
| CM5 | OM5 | sing | 1.43Å | 1.44Å | |
| CM5 | C5 | sing | 1.51Å | 1.50Å | |
| C5 | C6 | doub | 1.35Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.35Å | |
| C2 | N1 | sing | 1.35Å | 1.34Å | |
| C6 | N1 | sing | 1.36Å | 1.36Å | |
| N1 | C1' | sing | 1.47Å | 1.49Å | |
| OP1 | P | doub | 1.48Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| OP2 | P | sing | 1.61Å | 1.51Å | |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | OP3 | sing | 1.61Å | 1.53Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| OP3 | H1 | sing | 0.97Å | 0.95Å | |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| C6 | H11 | sing | 1.08Å | 1.08Å | |
| CM5 | H12 | sing | 1.09Å | 1.10Å | |
| CM5 | H13 | sing | 1.09Å | 1.10Å | |
| OM5 | H14 | sing | 0.97Å | 0.95Å | |
| N4 | H15 | sing | 0.97Å | 1.00Å | |
| N4 | H16 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N4 | C4 | N3 | 118.6° | 120.2° |
| N4 | C4 | C5 | 123.4° | 120.2° |
| C4 | N4 | H15 | 120.0° | 120.0° |
| C4 | N4 | H16 | 120.0° | 120.0° |
| N3 | C4 | C5 | 118.0° | 119.6° |
| C4 | N3 | C2 | 121.3° | 120.7° |
| C4 | C5 | CM5 | 125.4° | 120.5° |
| C4 | C5 | C6 | 116.5° | 119.0° |
| N3 | C2 | O2 | 119.4° | 119.5° |
| N3 | C2 | N1 | 121.6° | 121.1° |
| OM5 | CM5 | C5 | 107.2° | 109.4° |
| OM5 | CM5 | H12 | 110.0° | 109.4° |
| OM5 | CM5 | H13 | 110.0° | 109.5° |
| CM5 | OM5 | H14 | 109.5° | 114.0° |
| CM5 | C5 | C6 | 118.1° | 120.5° |
| C5 | CM5 | H12 | 110.0° | 109.5° |
| C5 | CM5 | H13 | 110.1° | 109.5° |
| C5 | C6 | N1 | 121.5° | 119.2° |
| C5 | C6 | H11 | 119.2° | 120.4° |
| O2 | C2 | N1 | 118.9° | 119.4° |
| C2 | N1 | C6 | 121.1° | 120.4° |
| C2 | N1 | C1' | 119.3° | 119.8° |
| C6 | N1 | C1' | 119.6° | 119.8° |
| N1 | C6 | H11 | 119.3° | 120.4° |
| N1 | C1' | O4' | 111.7° | 110.4° |
| N1 | C1' | C2' | 108.8° | 110.4° |
| N1 | C1' | H10 | 109.9° | 110.4° |
| OP1 | P | OP2 | 115.7° | 109.4° |
| OP1 | P | O5' | 104.2° | 109.5° |
| OP1 | P | OP3 | 113.1° | 109.4° |
| O4' | C1' | C2' | 106.3° | 104.8° |
| C1' | O4' | C4' | 110.2° | 105.3° |
| O4' | C1' | H10 | 110.6° | 110.3° |
| C1' | C2' | O2' | 112.2° | 110.5° |
| C1' | C2' | C3' | 108.2° | 104.1° |
| C1' | C2' | H8 | 108.5° | 110.6° |
| C2' | C1' | H10 | 109.4° | 110.4° |
| OP2 | P | O5' | 100.8° | 109.5° |
| OP2 | P | OP3 | 116.4° | 109.5° |
| P | OP2 | H2 | 109.5° | 114.0° |
| O4' | C4' | C5' | 110.5° | 110.4° |
| O4' | C4' | C3' | 109.8° | 104.8° |
| O4' | C4' | H5 | 109.7° | 110.5° |
| O2' | C2' | C3' | 109.5° | 110.5° |
| O2' | C2' | H8 | 109.8° | 110.5° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| C2' | C3' | C4' | 103.9° | 104.1° |
| C2' | C3' | O3' | 112.4° | 110.6° |
| C2' | C3' | H6 | 108.9° | 110.6° |
| C3' | C2' | H8 | 108.6° | 110.5° |
| O5' | P | OP3 | 104.2° | 109.5° |
| P | O5' | C5' | 115.0° | 123.1° |
| P | OP3 | H1 | 109.5° | 114.0° |
| O5' | C5' | C4' | 108.0° | 109.5° |
| O5' | C5' | H3 | 109.9° | 109.4° |
| O5' | C5' | H4 | 109.8° | 109.5° |
| C5' | C4' | C3' | 109.5° | 110.4° |
| C4' | C5' | H3 | 109.8° | 109.5° |
| C4' | C5' | H4 | 109.8° | 109.5° |
| C5' | C4' | H5 | 108.7° | 110.3° |
| C4' | C3' | O3' | 112.6° | 110.6° |
| C3' | C4' | H5 | 108.6° | 110.3° |
| C4' | C3' | H6 | 108.9° | 110.5° |
| O3' | C3' | H6 | 109.9° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H3 | C5' | H4 | 109.5° | 109.4° |
| H12 | CM5 | H13 | 109.5° | 109.5° |
| H15 | N4 | H16 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N4 | C4 | N3 | C5 | 178.9° | 179.6° |
| N4 | C4 | N3 | C2 | 178.0° | 180.0° |
| N4 | C4 | C5 | CM5 | 0.2° | 0.1° |
| N4 | C4 | C5 | C6 | 178.2° | 179.9° |
| C4 | N4 | H15 | H16 | 180.0° | 180.0° |
| N3 | C4 | C5 | CM5 | 179.1° | 179.7° |
| N3 | C4 | C5 | C6 | 0.6° | 0.3° |
| C4 | N3 | C2 | O2 | 179.8° | 179.9° |
| C4 | N3 | C2 | N1 | 1.4° | 0.1° |
| N3 | C4 | N4 | H15 | 0.0° | 0.0° |
| N3 | C4 | N4 | H16 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 0.9° | 0.4° |
| C4 | C5 | CM5 | OM5 | 129.1° | 179.9° |
| C4 | C5 | CM5 | C6 | 178.4° | 180.0° |
| C4 | C5 | C6 | N1 | 0.7° | 0.0° |
| C4 | C5 | C6 | H11 | 179.3° | 180.0° |
| C4 | C5 | CM5 | H12 | 9.5° | 60.0° |
| C4 | C5 | CM5 | H13 | 111.2° | 60.0° |
| C5 | C4 | N4 | H15 | 178.8° | 179.6° |
| C5 | C4 | N4 | H16 | 1.2° | 0.4° |
| N3 | C2 | O2 | N1 | 178.8° | 180.0° |
| N3 | C2 | N1 | C6 | 1.5° | 0.2° |
| N3 | C2 | N1 | C1' | 178.8° | 180.0° |
| OM5 | CM5 | C5 | H12 | 119.6° | 119.9° |
| OM5 | CM5 | C5 | H13 | 119.7° | 120.0° |
| OM5 | CM5 | C5 | C6 | 49.3° | 0.0° |
| OM5 | CM5 | H12 | H13 | 121.0° | 120.0° |
| CM5 | C5 | C6 | N1 | 179.3° | 180.0° |
| CM5 | C5 | C6 | H11 | 0.7° | 0.0° |
| C5 | CM5 | H12 | H13 | 121.1° | 120.0° |
| C5 | CM5 | OM5 | H14 | 99.4° | 180.0° |
| C5 | C6 | N1 | C2 | 1.2° | 0.3° |
| C5 | C6 | N1 | H11 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 179.1° | 180.0° |
| C6 | C5 | CM5 | H12 | 168.9° | 119.9° |
| C6 | C5 | CM5 | H13 | 70.4° | 120.0° |
| O2 | C2 | N1 | C6 | 179.7° | 179.8° |
| O2 | C2 | N1 | C1' | 0.0° | 0.1° |
| C2 | N1 | C6 | C1' | 179.7° | 179.7° |
| C2 | N1 | C1' | O4' | 170.2° | 53.6° |
| C2 | N1 | C1' | C2' | 72.8° | 61.8° |
| C2 | N1 | C1' | H10 | 47.0° | 175.8° |
| C2 | N1 | C6 | H11 | 178.8° | 179.7° |
| C6 | N1 | C1' | O4' | 9.6° | 126.7° |
| C6 | N1 | C1' | C2' | 107.5° | 117.9° |
| C6 | N1 | C1' | H10 | 132.7° | 4.5° |
| N1 | C1' | O4' | C2' | 118.6° | 118.8° |
| N1 | C1' | O4' | H10 | 122.7° | 122.3° |
| N1 | C1' | C2' | H10 | 120.1° | 122.4° |
| N1 | C1' | O4' | C4' | 106.5° | 159.3° |
| N1 | C1' | C2' | O2' | 131.2° | 98.6° |
| N1 | C1' | C2' | C3' | 107.9° | 142.8° |
| N1 | C1' | C2' | H8 | 9.7° | 24.1° |
| C1' | N1 | C6 | H11 | 0.9° | 0.0° |
| OP1 | P | OP2 | O5' | 111.7° | 120.0° |
| OP1 | P | OP2 | OP3 | 136.4° | 119.9° |
| OP1 | P | O5' | OP3 | 118.8° | 120.0° |
| OP1 | P | O5' | C5' | 50.9° | 55.0° |
| OP1 | P | OP3 | H1 | 0.0° | 60.0° |
| OP1 | P | OP2 | H2 | 0.0° | 180.0° |
| O4' | C1' | C2' | H10 | 119.5° | 118.8° |
| O4' | C1' | C2' | O2' | 108.4° | 142.6° |
| O4' | C1' | C2' | C3' | 12.5° | 24.0° |
| C1' | O4' | C4' | C5' | 113.8° | 159.4° |
| C1' | O4' | C4' | C3' | 7.1° | 40.5° |
| C1' | O4' | C4' | H5 | 126.4° | 78.4° |
| O4' | C1' | C2' | H8 | 130.2° | 94.7° |
| C2' | C1' | O4' | C4' | 12.0° | 40.5° |
| C1' | C2' | O2' | C3' | 120.1° | 114.6° |
| C1' | C2' | O2' | H8 | 120.7° | 122.7° |
| C1' | C2' | C3' | H8 | 117.6° | 118.8° |
| C1' | C2' | C3' | C4' | 8.1° | 0.1° |
| C1' | C2' | C3' | O3' | 130.2° | 118.7° |
| C1' | C2' | C3' | H6 | 107.8° | 118.7° |
| C1' | C2' | O2' | H9 | 180.0° | 176.1° |
| OP2 | P | O5' | OP3 | 121.0° | 120.0° |
| OP2 | P | O5' | C5' | 171.2° | 65.0° |
| OP2 | P | OP3 | H1 | 137.5° | 60.0° |
| O4' | C4' | C3' | C2' | 0.9° | 23.9° |
| O4' | C4' | C5' | O5' | 57.2° | 69.6° |
| O4' | C4' | C5' | C3' | 121.1° | 115.5° |
| O4' | C4' | C5' | H5 | 120.4° | 122.4° |
| O4' | C4' | C3' | H5 | 120.0° | 118.9° |
| O4' | C4' | C3' | O3' | 122.9° | 142.6° |
| O4' | C4' | C5' | H3 | 62.6° | 50.4° |
| O4' | C4' | C5' | H4 | 177.0° | 170.4° |
| O4' | C4' | C3' | H6 | 115.0° | 94.8° |
| C4' | O4' | C1' | H10 | 130.7° | 78.4° |
| O2' | C2' | C3' | H8 | 119.9° | 122.6° |
| O2' | C2' | C3' | C4' | 114.4° | 118.7° |
| O2' | C2' | C3' | O3' | 7.7° | 0.0° |
| O2' | C2' | C3' | H6 | 129.7° | 122.7° |
| O2' | C2' | C1' | H10 | 11.1° | 23.8° |
| C2' | C3' | C4' | C5' | 122.4° | 142.8° |
| C2' | C3' | C4' | O3' | 121.9° | 118.7° |
| C2' | C3' | C4' | H6 | 115.9° | 118.7° |
| C2' | C3' | O3' | H6 | 121.5° | 122.7° |
| C2' | C3' | C4' | H5 | 119.0° | 95.0° |
| C2' | C3' | O3' | HO3' | 180.0° | 65.3° |
| C3' | C2' | O2' | H9 | 59.9° | 61.4° |
| C3' | C2' | C1' | H10 | 132.0° | 94.8° |
| P | O5' | C5' | C4' | 167.6° | 180.0° |
| O5' | P | OP3 | H1 | 112.6° | 180.0° |
| O5' | P | OP2 | H2 | 111.7° | 60.0° |
| P | O5' | C5' | H3 | 47.8° | 60.0° |
| P | O5' | C5' | H4 | 72.6° | 59.9° |
| OP3 | P | O5' | C5' | 67.8° | 175.0° |
| OP3 | P | OP2 | H2 | 136.4° | 60.0° |
| O5' | C5' | C4' | H3 | 119.8° | 120.0° |
| O5' | C5' | C4' | H4 | 119.7° | 120.0° |
| O5' | C5' | C4' | C3' | 178.3° | 175.0° |
| O5' | C5' | H3 | H4 | 120.7° | 119.9° |
| O5' | C5' | C4' | H5 | 63.2° | 52.8° |
| C5' | C4' | C3' | H5 | 118.6° | 122.2° |
| C5' | C4' | C3' | O3' | 115.7° | 98.5° |
| C4' | C5' | H3 | H4 | 120.7° | 120.0° |
| C5' | C4' | C3' | H6 | 6.5° | 24.1° |
| C4' | C3' | O3' | H6 | 121.6° | 122.6° |
| C3' | C4' | C5' | H3 | 58.5° | 65.1° |
| C3' | C4' | C5' | H4 | 61.9° | 54.9° |
| C4' | C3' | O3' | HO3' | 63.1° | 180.0° |
| C4' | C3' | C2' | H8 | 125.7° | 118.7° |
| O3' | C3' | C4' | H5 | 2.9° | 23.7° |
| O3' | C3' | C2' | H8 | 112.2° | 122.5° |
| H3 | C5' | C4' | H5 | 177.0° | 172.8° |
| H4 | C5' | C4' | H5 | 56.6° | 67.3° |
| H5 | C4' | C3' | H6 | 125.0° | 146.3° |
| H6 | C3' | O3' | HO3' | 58.5° | 57.4° |
| H6 | C3' | C2' | H8 | 9.8° | 0.1° |
| H8 | C2' | O2' | H9 | 59.3° | 61.2° |
| H8 | C2' | C1' | H10 | 110.4° | 146.5° |
| H12 | CM5 | OM5 | H14 | 141.0° | 60.0° |
| H13 | CM5 | OM5 | H14 | 20.3° | 60.0° |
