5HC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C2 | N1 | sing | 1.35Å | 1.39Å | |
| C2 | N3 | sing | 1.33Å | 1.36Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| C2' | C3' | sing | 1.54Å | 1.50Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| C4 | N4 | sing | 1.38Å | 1.34Å | |
| C5 | C5M | sing | 1.51Å | 1.49Å | |
| C5M | O5 | sing | 1.43Å | 1.42Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N4 | HN41 | sing | 0.97Å | 1.00Å | |
| N4 | HN42 | sing | 0.97Å | 1.00Å | |
| C5M | H5M2 | sing | 1.09Å | 1.10Å | |
| C5M | H5M1 | sing | 1.09Å | 1.10Å | |
| O5 | HO5 | sing | 0.97Å | 0.95Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4' | O4' | C1' | 110.1° | 105.3° |
| O4' | C4' | C5' | 112.2° | 110.4° |
| O4' | C4' | C3' | 105.6° | 104.8° |
| O4' | C4' | H4 | 109.6° | 110.5° |
| O4' | C1' | N1 | 105.4° | 110.4° |
| O4' | C1' | C2' | 107.9° | 104.8° |
| O4' | C1' | H1' | 110.0° | 110.4° |
| C5' | C4' | C3' | 112.2° | 110.4° |
| C4' | C5' | O5' | 109.7° | 109.5° |
| C4' | C5' | H5' | 109.4° | 109.5° |
| C4' | C5' | H5'' | 109.4° | 109.5° |
| C5' | C4' | H4 | 108.7° | 110.3° |
| C4' | C3' | C2' | 105.1° | 104.0° |
| C4' | C3' | O3' | 109.2° | 110.5° |
| C3' | C4' | H4 | 108.5° | 110.3° |
| C4' | C3' | H3' | 109.2° | 110.5° |
| O2 | C2 | N1 | 118.6° | 119.5° |
| O2 | C2 | N3 | 122.0° | 119.4° |
| N1 | C1' | C2' | 115.2° | 110.3° |
| C1' | N1 | C2 | 118.7° | 119.9° |
| C1' | N1 | C6 | 121.5° | 119.8° |
| N1 | C1' | H1' | 109.3° | 110.3° |
| C1' | C2' | C3' | 105.9° | 104.1° |
| C1' | C2' | H2' | 110.4° | 110.5° |
| C1' | C2' | H2'' | 110.4° | 110.6° |
| C2' | C1' | H1' | 108.9° | 110.5° |
| C5' | O5' | P | 119.1° | 123.0° |
| O5' | C5' | H5' | 109.4° | 109.5° |
| O5' | C5' | H5'' | 109.4° | 109.5° |
| N1 | C2 | N3 | 119.4° | 121.1° |
| C2 | N1 | C6 | 119.8° | 120.3° |
| C2 | N3 | C4 | 120.4° | 120.7° |
| N1 | C6 | C5 | 121.5° | 119.3° |
| N1 | C6 | H6 | 119.3° | 120.4° |
| N3 | C4 | C5 | 121.6° | 119.6° |
| N3 | C4 | N4 | 118.3° | 120.2° |
| O5' | P | OP1 | 107.9° | 109.4° |
| O5' | P | OP2 | 108.4° | 109.5° |
| O5' | P | OP3 | 104.9° | 109.5° |
| C2' | C3' | O3' | 113.0° | 110.5° |
| C2' | C3' | H3' | 109.6° | 110.7° |
| C3' | C2' | H2' | 110.4° | 110.5° |
| C3' | C2' | H2'' | 110.4° | 110.5° |
| C6 | C5 | C4 | 117.3° | 118.9° |
| C6 | C5 | C5M | 122.3° | 120.6° |
| C5 | C6 | H6 | 119.2° | 120.3° |
| O3' | C3' | H3' | 110.6° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 113.9° |
| OP1 | P | OP2 | 120.4° | 109.5° |
| OP1 | P | OP3 | 107.6° | 109.4° |
| OP2 | P | OP3 | 106.7° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| C5 | C4 | N4 | 120.1° | 120.2° |
| C4 | C5 | C5M | 120.4° | 120.5° |
| C4 | N4 | HN41 | 120.0° | 120.0° |
| C4 | N4 | HN42 | 120.0° | 120.0° |
| C5 | C5M | O5 | 113.9° | 109.5° |
| C5 | C5M | H5M2 | 108.3° | 109.5° |
| C5 | C5M | H5M1 | 108.3° | 109.5° |
| O5 | C5M | H5M2 | 108.4° | 109.5° |
| O5 | C5M | H5M1 | 108.4° | 109.4° |
| C5M | O5 | HO5 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| H5' | C5' | H5'' | 109.5° | 109.4° |
| H2' | C2' | H2'' | 109.5° | 110.4° |
| HN41 | N4 | HN42 | 120.0° | 120.0° |
| H5M2 | C5M | H5M1 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4' | C4' | C5' | C3' | 118.7° | 115.4° |
| O4' | C4' | C5' | H4 | 121.4° | 122.4° |
| O4' | C4' | C3' | H4 | 117.4° | 119.0° |
| C4' | O4' | C1' | N1 | 133.0° | 159.3° |
| C4' | O4' | C1' | C2' | 9.5° | 40.6° |
| O4' | C4' | C5' | O5' | 52.0° | 69.6° |
| O4' | C4' | C3' | C2' | 23.6° | 24.0° |
| O4' | C4' | C3' | O3' | 145.1° | 142.6° |
| O4' | C4' | C5' | H5' | 68.1° | 50.4° |
| O4' | C4' | C5' | H5'' | 172.0° | 170.3° |
| O4' | C4' | C3' | H3' | 93.9° | 94.8° |
| C4' | O4' | C1' | H1' | 109.2° | 78.4° |
| C1' | O4' | C4' | C5' | 143.2° | 159.4° |
| C1' | O4' | C4' | C3' | 20.7° | 40.5° |
| O4' | C1' | N1 | C2' | 118.8° | 115.4° |
| O4' | C1' | N1 | H1' | 118.2° | 122.3° |
| O4' | C1' | C2' | H1' | 119.3° | 119.0° |
| O4' | C1' | N1 | C2 | 145.2° | 53.8° |
| O4' | C1' | N1 | C6 | 34.6° | 126.5° |
| O4' | C1' | C2' | C3' | 5.9° | 24.0° |
| C1' | O4' | C4' | H4 | 96.0° | 78.3° |
| O4' | C1' | C2' | H2' | 113.5° | 94.7° |
| O4' | C1' | C2' | H2'' | 125.3° | 142.7° |
| C5' | C4' | C3' | H4 | 120.0° | 122.1° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.0° | 120.1° |
| C4' | C5' | O5' | P | 168.8° | 180.0° |
| C5' | C4' | C3' | C2' | 146.1° | 142.8° |
| C5' | C4' | C3' | O3' | 92.3° | 98.5° |
| C4' | C5' | H5' | H5'' | 119.9° | 120.0° |
| C5' | C4' | C3' | H3' | 28.7° | 24.1° |
| C4' | C3' | C2' | C1' | 17.9° | 0.0° |
| C3' | C4' | C5' | O5' | 66.8° | 175.0° |
| C4' | C3' | C2' | O3' | 119.0° | 118.6° |
| C4' | C3' | C2' | H3' | 117.2° | 118.7° |
| C4' | C3' | O3' | H3' | 120.2° | 122.6° |
| C3' | C4' | C5' | H5' | 173.2° | 65.0° |
| C3' | C4' | C5' | H5'' | 53.3° | 54.9° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | H2' | 101.6° | 118.7° |
| C4' | C3' | C2' | H2'' | 137.3° | 118.8° |
| O2 | C2 | N1 | C1' | 0.1° | 0.0° |
| O2 | C2 | N1 | N3 | 180.0° | 180.0° |
| O2 | C2 | N1 | C6 | 179.9° | 179.8° |
| O2 | C2 | N3 | C4 | 180.0° | 180.0° |
| N1 | C1' | C2' | H1' | 123.2° | 122.3° |
| C1' | N1 | C2 | C6 | 179.8° | 179.7° |
| C1' | N1 | C2 | N3 | 179.9° | 180.0° |
| N1 | C1' | C2' | C3' | 111.5° | 142.8° |
| C1' | N1 | C6 | C5 | 180.0° | 179.8° |
| N1 | C1' | C2' | H2' | 129.0° | 24.1° |
| N1 | C1' | C2' | H2'' | 7.9° | 98.5° |
| C1' | N1 | C6 | H6 | 0.0° | 0.0° |
| C2' | C1' | N1 | C2 | 96.0° | 61.5° |
| C2' | C1' | N1 | C6 | 84.2° | 118.2° |
| C1' | C2' | C3' | H2' | 119.4° | 118.7° |
| C1' | C2' | C3' | H2'' | 119.4° | 118.8° |
| C1' | C2' | C3' | O3' | 136.9° | 118.6° |
| C1' | C2' | C3' | H3' | 99.3° | 118.7° |
| C1' | C2' | H2' | H2'' | 121.6° | 122.7° |
| C5' | O5' | P | OP1 | 40.6° | 55.0° |
| C5' | O5' | P | OP2 | 172.4° | 65.0° |
| C5' | O5' | P | OP3 | 73.9° | 175.0° |
| O5' | C5' | H5' | H5'' | 119.9° | 120.0° |
| O5' | C5' | C4' | H4 | 173.3° | 52.8° |
| N1 | C2 | N3 | C4 | 0.0° | 0.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.5° |
| C2 | N1 | C1' | H1' | 27.1° | 176.1° |
| C2 | N1 | C6 | H6 | 179.8° | 179.7° |
| N3 | C2 | N1 | C6 | 0.1° | 0.3° |
| C2 | N3 | C4 | C5 | 0.0° | 0.1° |
| C2 | N3 | C4 | N4 | 180.0° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | C4 | 0.1° | 0.5° |
| N1 | C6 | C5 | C5M | 179.9° | 179.7° |
| C6 | N1 | C1' | H1' | 152.8° | 4.2° |
| N3 | C4 | C5 | C6 | 0.1° | 0.2° |
| N3 | C4 | C5 | N4 | 180.0° | 179.9° |
| N3 | C4 | C5 | C5M | 179.9° | 180.0° |
| N3 | C4 | N4 | HN41 | 0.0° | 0.0° |
| N3 | C4 | N4 | HN42 | 180.0° | 180.0° |
| O5' | P | OP1 | OP2 | 125.0° | 120.0° |
| O5' | P | OP1 | OP3 | 112.7° | 120.0° |
| O5' | P | OP2 | OP3 | 112.4° | 120.0° |
| O5' | P | OP2 | HOP2 | 124.8° | 59.9° |
| P | O5' | C5' | H5' | 48.7° | 59.9° |
| P | O5' | C5' | H5'' | 71.2° | 60.0° |
| O5' | P | OP3 | HOP3 | 114.7° | 180.0° |
| C2' | C3' | O3' | H3' | 123.2° | 122.8° |
| C2' | C3' | C4' | H4 | 93.8° | 95.0° |
| C2' | C3' | O3' | HO3' | 63.4° | 65.4° |
| C3' | C2' | H2' | H2'' | 121.7° | 122.6° |
| C3' | C2' | C1' | H1' | 125.3° | 94.9° |
| C6 | C5 | C4 | C5M | 179.8° | 179.8° |
| C6 | C5 | C4 | N4 | 179.9° | 179.7° |
| C6 | C5 | C5M | O5 | 125.4° | 0.2° |
| C6 | C5 | C5M | H5M2 | 114.0° | 120.2° |
| C6 | C5 | C5M | H5M1 | 4.7° | 119.7° |
| O3' | C3' | C4' | H4 | 27.7° | 23.6° |
| O3' | C3' | C2' | H2' | 17.5° | 122.7° |
| O3' | C3' | C2' | H2'' | 103.7° | 0.2° |
| OP1 | P | OP2 | OP3 | 122.8° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 179.9° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP2 | P | OP3 | HOP3 | 130.5° | 60.0° |
| C4 | C5 | C5M | O5 | 54.8° | 180.0° |
| C5 | C4 | N4 | HN41 | 180.0° | 179.9° |
| C5 | C4 | N4 | HN42 | 0.0° | 0.1° |
| C4 | C5 | C5M | H5M2 | 65.8° | 59.9° |
| C4 | C5 | C5M | H5M1 | 175.5° | 60.1° |
| C4 | C5 | C6 | H6 | 179.9° | 179.7° |
| N4 | C4 | C5 | C5M | 0.1° | 0.1° |
| C4 | N4 | HN41 | HN42 | 180.0° | 180.0° |
| C5 | C5M | O5 | H5M2 | 120.7° | 120.1° |
| C5 | C5M | O5 | H5M1 | 120.6° | 119.9° |
| C5 | C5M | H5M2 | H5M1 | 117.9° | 120.0° |
| C5 | C5M | O5 | HO5 | 180.0° | 180.0° |
| C5M | C5 | C6 | H6 | 0.1° | 0.1° |
| O5 | C5M | H5M2 | H5M1 | 118.0° | 119.9° |
| OP3 | P | OP2 | HOP2 | 122.8° | 60.1° |
| H5' | C5' | C4' | H4 | 53.3° | 172.8° |
| H5'' | C5' | C4' | H4 | 66.6° | 67.2° |
| H4 | C4' | C3' | H3' | 148.7° | 146.2° |
| H3' | C3' | O3' | HO3' | 59.8° | 57.4° |
| H3' | C3' | C2' | H2' | 141.2° | 0.0° |
| H3' | C3' | C2' | H2'' | 20.1° | 122.5° |
| H2' | C2' | C1' | H1' | 5.8° | 146.4° |
| H2'' | C2' | C1' | H1' | 115.3° | 23.8° |
| H5M2 | C5M | O5 | HO5 | 59.3° | 59.9° |
| H5M1 | C5M | O5 | HO5 | 59.4° | 60.0° |
