5GW
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OAA | CAW | doub | 1.22Å | 1.34Å | |
| NAQ | CAW | sing | 1.35Å | 1.35Å | |
| NAQ | CAX | sing | 1.34Å | 1.36Å | |
| OAB | CAX | doub | 1.22Å | 1.25Å | |
| CAW | CAV | sing | 1.47Å | 1.40Å | |
| CAX | NBC | sing | 1.34Å | 1.32Å | |
| CAM | CAK | doub | 1.38Å | 1.39Å | Aromatic |
| CAM | CAU | sing | 1.39Å | 1.39Å | Aromatic |
| C2' | O2' | sing | 1.43Å | 1.39Å | |
| C2' | C3' | sing | 1.55Å | 1.47Å | |
| C2' | C1' | sing | 1.55Å | 1.46Å | |
| CAV | CAU | sing | 1.48Å | 1.50Å | |
| CAV | CAO | doub | 1.36Å | 1.40Å | |
| NBC | CAO | sing | 1.37Å | 1.37Å | |
| NBC | C1' | sing | 1.46Å | 1.47Å | |
| CAK | CAJ | sing | 1.38Å | 1.39Å | Aromatic |
| O3' | C3' | sing | 1.43Å | 1.39Å | |
| CAU | CAN | doub | 1.39Å | 1.39Å | Aromatic |
| C3' | C4' | sing | 1.54Å | 1.48Å | |
| C1' | O4' | sing | 1.44Å | 1.46Å | |
| OAD | PBE | doub | 1.48Å | 1.49Å | |
| OAI | PBE | sing | 1.61Å | 1.53Å | |
| CAJ | CAL | doub | 1.38Å | 1.40Å | Aromatic |
| CAN | CAL | sing | 1.38Å | 1.39Å | Aromatic |
| PBE | O5' | sing | 1.61Å | 1.61Å | |
| PBE | OAT | sing | 1.61Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C5' | sing | 1.53Å | 1.49Å | |
| O5' | C5' | sing | 1.43Å | 1.38Å | |
| OAH | PBD | doub | 1.48Å | 1.56Å | |
| OAT | PBD | sing | 1.61Å | 1.59Å | |
| OAG | PBD | sing | 1.61Å | 1.48Å | |
| PBD | OAC | sing | 1.61Å | 1.48Å | |
| CAM | H1 | sing | 1.08Å | 1.08Å | |
| CAK | H2 | sing | 1.08Å | 1.08Å | |
| CAJ | H3 | sing | 1.08Å | 1.08Å | |
| CAL | H4 | sing | 1.08Å | 1.08Å | |
| CAN | H5 | sing | 1.08Å | 1.08Å | |
| CAO | H6 | sing | 1.08Å | 1.08Å | |
| NAQ | H7 | sing | 0.97Å | 1.00Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| C4' | H13 | sing | 1.09Å | 1.10Å | |
| C5' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| OAI | H16 | sing | 0.97Å | 0.95Å | |
| OAG | H17 | sing | 0.97Å | 0.95Å | |
| OAC | H18 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OAA | CAW | NAQ | 120.1° | 120.7° |
| OAA | CAW | CAV | 120.1° | 120.6° |
| CAW | NAQ | CAX | 119.7° | 120.3° |
| NAQ | CAW | CAV | 119.8° | 118.7° |
| CAW | NAQ | H7 | 120.1° | 119.8° |
| NAQ | CAX | OAB | 119.2° | 119.1° |
| NAQ | CAX | NBC | 122.2° | 121.9° |
| CAX | NAQ | H7 | 120.1° | 119.9° |
| OAB | CAX | NBC | 118.6° | 119.0° |
| CAW | CAV | CAU | 120.5° | 120.8° |
| CAW | CAV | CAO | 118.2° | 118.3° |
| CAX | NBC | CAO | 120.3° | 121.4° |
| CAX | NBC | C1' | 120.1° | 119.4° |
| CAK | CAM | CAU | 120.0° | 119.9° |
| CAM | CAK | CAJ | 120.0° | 120.1° |
| CAK | CAM | H1 | 120.0° | 120.1° |
| CAM | CAK | H2 | 120.0° | 119.9° |
| CAM | CAU | CAV | 120.1° | 120.2° |
| CAM | CAU | CAN | 119.9° | 119.7° |
| CAU | CAM | H1 | 120.0° | 120.0° |
| O2' | C2' | C3' | 110.4° | 110.5° |
| O2' | C2' | C1' | 109.2° | 110.5° |
| O2' | C2' | H9 | 112.6° | 110.5° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| C3' | C2' | C1' | 101.1° | 104.1° |
| C2' | C3' | O3' | 106.8° | 110.5° |
| C2' | C3' | C4' | 102.9° | 104.1° |
| C3' | C2' | H9 | 111.5° | 110.5° |
| C2' | C3' | H11 | 111.1° | 110.5° |
| C2' | C1' | NBC | 110.4° | 110.4° |
| C2' | C1' | O4' | 107.8° | 104.8° |
| C2' | C1' | H8 | 110.3° | 110.5° |
| C1' | C2' | H9 | 111.5° | 110.6° |
| CAU | CAV | CAO | 121.2° | 120.8° |
| CAV | CAU | CAN | 120.0° | 120.1° |
| CAV | CAO | NBC | 119.7° | 119.4° |
| CAV | CAO | H6 | 120.1° | 120.2° |
| CAO | NBC | C1' | 119.6° | 119.2° |
| NBC | CAO | H6 | 120.1° | 120.3° |
| NBC | C1' | O4' | 107.7° | 110.4° |
| NBC | C1' | H8 | 110.2° | 110.4° |
| CAK | CAJ | CAL | 119.9° | 120.3° |
| CAJ | CAK | H2 | 120.0° | 119.9° |
| CAK | CAJ | H3 | 120.0° | 119.9° |
| O3' | C3' | C4' | 112.3° | 110.5° |
| O3' | C3' | H11 | 112.4° | 110.7° |
| C3' | O3' | H12 | 109.5° | 114.0° |
| CAU | CAN | CAL | 120.1° | 119.9° |
| CAU | CAN | H5 | 120.0° | 120.1° |
| C3' | C4' | O4' | 103.9° | 104.8° |
| C3' | C4' | C5' | 113.0° | 110.4° |
| C4' | C3' | H11 | 110.9° | 110.5° |
| C3' | C4' | H13 | 109.8° | 110.4° |
| C1' | O4' | C4' | 106.4° | 105.3° |
| O4' | C1' | H8 | 110.3° | 110.3° |
| OAD | PBE | OAI | 111.6° | 109.5° |
| OAD | PBE | O5' | 110.9° | 109.5° |
| OAD | PBE | OAT | 111.7° | 109.5° |
| OAI | PBE | O5' | 110.0° | 109.5° |
| OAI | PBE | OAT | 110.8° | 109.5° |
| PBE | OAI | H16 | 109.5° | 114.0° |
| CAJ | CAL | CAN | 120.0° | 120.1° |
| CAL | CAJ | H3 | 120.0° | 119.9° |
| CAJ | CAL | H4 | 120.0° | 120.0° |
| CAN | CAL | H4 | 120.0° | 119.9° |
| CAL | CAN | H5 | 119.9° | 120.1° |
| O5' | PBE | OAT | 101.4° | 109.4° |
| PBE | O5' | C5' | 120.1° | 123.0° |
| PBE | OAT | PBD | 130.0° | 134.0° |
| O4' | C4' | C5' | 109.5° | 110.4° |
| O4' | C4' | H13 | 110.8° | 110.3° |
| C4' | C5' | O5' | 116.2° | 109.5° |
| C5' | C4' | H13 | 109.7° | 110.4° |
| C4' | C5' | H14 | 107.8° | 109.5° |
| C4' | C5' | H15 | 107.7° | 109.5° |
| O5' | C5' | H14 | 107.8° | 109.4° |
| O5' | C5' | H15 | 107.8° | 109.4° |
| OAH | PBD | OAT | 106.6° | 109.5° |
| OAH | PBD | OAG | 108.7° | 109.5° |
| OAH | PBD | OAC | 106.5° | 109.5° |
| OAT | PBD | OAG | 112.8° | 109.5° |
| OAT | PBD | OAC | 107.1° | 109.4° |
| OAG | PBD | OAC | 114.6° | 109.5° |
| PBD | OAG | H17 | 109.5° | 114.0° |
| PBD | OAC | H18 | 109.5° | 114.1° |
| H14 | C5' | H15 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OAA | CAW | NAQ | CAV | 179.9° | 179.9° |
| OAA | CAW | NAQ | CAX | 180.0° | 179.9° |
| OAA | CAW | CAV | CAU | 0.6° | 0.1° |
| OAA | CAW | CAV | CAO | 179.9° | 179.8° |
| OAA | CAW | NAQ | H7 | 0.0° | 0.1° |
| CAW | NAQ | CAX | H7 | 180.0° | 180.0° |
| CAW | NAQ | CAX | OAB | 180.0° | 180.0° |
| CAW | NAQ | CAX | NBC | 0.0° | 0.3° |
| NAQ | CAW | CAV | CAU | 179.5° | 180.0° |
| NAQ | CAW | CAV | CAO | 0.2° | 0.3° |
| NAQ | CAX | OAB | NBC | 180.0° | 179.7° |
| CAX | NAQ | CAW | CAV | 0.1° | 0.1° |
| NAQ | CAX | NBC | CAO | 0.2° | 0.3° |
| NAQ | CAX | NBC | C1' | 179.9° | 180.0° |
| OAB | CAX | NBC | CAO | 179.8° | 180.0° |
| OAB | CAX | NBC | C1' | 0.0° | 0.3° |
| OAB | CAX | NAQ | H7 | 0.0° | 0.0° |
| CAW | CAV | CAU | CAM | 21.9° | 65.3° |
| CAW | CAV | CAU | CAO | 179.3° | 179.7° |
| CAW | CAV | CAO | NBC | 0.4° | 0.3° |
| CAW | CAV | CAU | CAN | 159.2° | 114.7° |
| CAW | CAV | CAO | H6 | 179.6° | 179.7° |
| CAV | CAW | NAQ | H7 | 179.9° | 180.0° |
| CAX | NBC | C1' | C2' | 86.1° | 61.8° |
| CAX | NBC | CAO | CAV | 0.3° | 0.0° |
| CAX | NBC | CAO | C1' | 179.9° | 179.7° |
| CAX | NBC | C1' | O4' | 156.4° | 53.5° |
| CAX | NBC | CAO | H6 | 179.7° | 180.0° |
| NBC | CAX | NAQ | H7 | 180.0° | 179.7° |
| CAX | NBC | C1' | H8 | 36.0° | 175.8° |
| CAK | CAM | CAU | H1 | 180.0° | 179.7° |
| CAK | CAM | CAU | CAV | 179.6° | 180.0° |
| CAM | CAK | CAJ | H2 | 180.0° | 179.9° |
| CAK | CAM | CAU | CAN | 0.6° | 0.1° |
| CAM | CAK | CAJ | CAL | 0.0° | 0.1° |
| CAM | CAK | CAJ | H3 | 180.0° | 180.0° |
| CAM | CAU | CAV | CAN | 179.0° | 179.9° |
| CAM | CAU | CAV | CAO | 157.4° | 115.0° |
| CAU | CAM | CAK | CAJ | 0.3° | 0.0° |
| CAM | CAU | CAN | CAL | 0.6° | 0.1° |
| CAU | CAM | CAK | H2 | 179.7° | 180.0° |
| CAM | CAU | CAN | H5 | 179.4° | 180.0° |
| O2' | C2' | C3' | C1' | 115.5° | 118.6° |
| O2' | C2' | C3' | H9 | 125.9° | 122.6° |
| O2' | C2' | C1' | H9 | 125.1° | 122.7° |
| O2' | C2' | C1' | NBC | 151.7° | 98.6° |
| O2' | C2' | C3' | O3' | 42.7° | 0.0° |
| O2' | C2' | C3' | C4' | 75.6° | 118.6° |
| O2' | C2' | C1' | O4' | 90.9° | 142.6° |
| O2' | C2' | C1' | H8 | 29.6° | 23.8° |
| O2' | C2' | C3' | H11 | 165.6° | 122.8° |
| C3' | C2' | C1' | H9 | 118.6° | 118.7° |
| C3' | C2' | C1' | NBC | 92.0° | 142.8° |
| C2' | C3' | O3' | C4' | 112.0° | 114.6° |
| C2' | C3' | O3' | H11 | 122.1° | 122.7° |
| C2' | C3' | C4' | H11 | 118.9° | 118.6° |
| C3' | C2' | C1' | O4' | 25.4° | 24.0° |
| C2' | C3' | C4' | O4' | 40.9° | 24.0° |
| C2' | C3' | C4' | C5' | 159.5° | 142.8° |
| C3' | C2' | C1' | H8 | 146.0° | 94.8° |
| C3' | C2' | O2' | H10 | 180.0° | 61.5° |
| C2' | C3' | O3' | H12 | 180.0° | 61.5° |
| C2' | C3' | C4' | H13 | 77.7° | 94.9° |
| C2' | C1' | NBC | CAO | 93.8° | 118.5° |
| C2' | C1' | NBC | O4' | 117.4° | 115.3° |
| C2' | C1' | NBC | H8 | 122.1° | 122.4° |
| C1' | C2' | C3' | O3' | 158.2° | 118.6° |
| C1' | C2' | C3' | C4' | 39.8° | 0.0° |
| C2' | C1' | O4' | H8 | 120.5° | 118.9° |
| C2' | C1' | O4' | C4' | 0.6° | 40.5° |
| C1' | C2' | O2' | H10 | 69.7° | 176.1° |
| C1' | C2' | C3' | H11 | 78.9° | 118.6° |
| CAU | CAV | CAO | NBC | 179.6° | 180.0° |
| CAV | CAU | CAN | CAL | 179.5° | 180.0° |
| CAV | CAU | CAM | H1 | 0.4° | 0.3° |
| CAV | CAU | CAN | H5 | 0.4° | 0.1° |
| CAU | CAV | CAO | H6 | 0.4° | 0.1° |
| CAV | CAO | NBC | H6 | 180.0° | 180.0° |
| CAV | CAO | NBC | C1' | 179.8° | 179.7° |
| CAO | CAV | CAU | CAN | 21.6° | 64.9° |
| CAO | NBC | C1' | O4' | 23.7° | 126.2° |
| CAO | NBC | C1' | H8 | 144.1° | 3.9° |
| NBC | C1' | O4' | H8 | 120.3° | 122.3° |
| NBC | C1' | O4' | C4' | 118.6° | 159.3° |
| C1' | NBC | CAO | H6 | 0.2° | 0.3° |
| NBC | C1' | C2' | H9 | 26.6° | 24.1° |
| CAK | CAJ | CAL | H3 | 180.0° | 180.0° |
| CAK | CAJ | CAL | CAN | 0.0° | 0.1° |
| CAJ | CAK | CAM | H1 | 179.7° | 179.8° |
| CAK | CAJ | CAL | H4 | 180.0° | 180.0° |
| O3' | C3' | C4' | H11 | 126.6° | 122.8° |
| O3' | C3' | C4' | O4' | 155.4° | 142.6° |
| O3' | C3' | C4' | C5' | 86.0° | 98.6° |
| O3' | C3' | C2' | H9 | 83.2° | 122.6° |
| O3' | C3' | C4' | H13 | 36.8° | 23.7° |
| CAU | CAN | CAL | CAJ | 0.3° | 0.2° |
| CAU | CAN | CAL | H5 | 180.0° | 179.9° |
| CAN | CAU | CAM | H1 | 179.4° | 179.8° |
| CAU | CAN | CAL | H4 | 179.7° | 180.0° |
| C3' | C4' | O4' | C1' | 24.6° | 40.5° |
| C3' | C4' | O4' | C5' | 121.0° | 118.8° |
| C3' | C4' | O4' | H13 | 117.9° | 118.9° |
| C3' | C4' | C5' | H13 | 122.8° | 122.3° |
| C3' | C4' | C5' | O5' | 48.0° | 175.0° |
| C4' | C3' | C2' | H9 | 158.4° | 118.8° |
| C4' | C3' | O3' | H12 | 68.0° | 176.1° |
| C3' | C4' | C5' | H14 | 169.0° | 55.0° |
| C3' | C4' | C5' | H15 | 73.0° | 65.0° |
| C1' | O4' | C4' | C5' | 145.5° | 159.3° |
| O4' | C1' | C2' | H9 | 144.0° | 94.7° |
| C1' | O4' | C4' | H13 | 93.3° | 78.4° |
| OAD | PBE | OAI | O5' | 123.5° | 120.0° |
| OAD | PBE | OAI | OAT | 125.2° | 120.0° |
| OAD | PBE | O5' | OAT | 118.7° | 120.0° |
| OAD | PBE | O5' | C5' | 157.3° | 55.0° |
| OAD | PBE | OAT | PBD | 87.6° | 40.0° |
| OAD | PBE | OAI | H16 | 0.0° | 180.0° |
| OAI | PBE | O5' | OAT | 117.3° | 120.0° |
| OAI | PBE | O5' | C5' | 33.4° | 65.0° |
| OAI | PBE | OAT | PBD | 37.5° | 80.0° |
| CAJ | CAL | CAN | H4 | 180.0° | 179.9° |
| CAL | CAJ | CAK | H2 | 180.0° | 180.0° |
| CAJ | CAL | CAN | H5 | 179.7° | 180.0° |
| CAN | CAL | CAJ | H3 | 180.0° | 179.9° |
| PBE | O5' | C5' | C4' | 109.2° | 180.0° |
| O5' | PBE | OAT | PBD | 154.2° | 160.0° |
| PBE | O5' | C5' | H14 | 129.8° | 60.0° |
| PBE | O5' | C5' | H15 | 11.7° | 60.0° |
| O5' | PBE | OAI | H16 | 123.5° | 60.0° |
| OAT | PBE | O5' | C5' | 83.9° | 175.0° |
| PBE | OAT | PBD | OAH | 65.2° | 40.0° |
| PBE | OAT | PBD | OAG | 54.1° | 160.0° |
| PBE | OAT | PBD | OAC | 178.9° | 80.1° |
| OAT | PBE | OAI | H16 | 125.1° | 60.0° |
| O4' | C4' | C5' | H13 | 121.8° | 122.2° |
| O4' | C4' | C5' | O5' | 67.3° | 69.6° |
| C4' | O4' | C1' | H8 | 121.1° | 78.4° |
| O4' | C4' | C3' | H11 | 78.0° | 94.6° |
| O4' | C4' | C5' | H14 | 53.7° | 170.4° |
| O4' | C4' | C5' | H15 | 171.7° | 50.4° |
| C4' | C5' | O5' | H14 | 121.0° | 120.0° |
| C4' | C5' | O5' | H15 | 121.0° | 120.0° |
| C5' | C4' | C3' | H11 | 40.6° | 24.2° |
| C4' | C5' | H14 | H15 | 116.9° | 120.1° |
| O5' | C5' | C4' | H13 | 170.8° | 52.7° |
| O5' | C5' | H14 | H15 | 117.0° | 120.0° |
| OAH | PBD | OAT | OAG | 119.3° | 120.0° |
| OAH | PBD | OAT | OAC | 113.7° | 120.0° |
| OAH | PBD | OAG | OAC | 119.0° | 120.0° |
| OAH | PBD | OAG | H17 | 0.0° | 60.0° |
| OAH | PBD | OAC | H18 | 0.0° | 180.0° |
| OAT | PBD | OAG | OAC | 122.9° | 120.0° |
| OAT | PBD | OAG | H17 | 118.1° | 180.0° |
| OAT | PBD | OAC | H18 | 113.8° | 60.0° |
| OAG | PBD | OAC | H18 | 120.2° | 60.0° |
| OAC | PBD | OAG | H17 | 119.0° | 60.0° |
| H1 | CAM | CAK | H2 | 0.3° | 0.3° |
| H2 | CAK | CAJ | H3 | 0.0° | 0.0° |
| H3 | CAJ | CAL | H4 | 0.0° | 0.0° |
| H4 | CAL | CAN | H5 | 0.3° | 0.1° |
| H8 | C1' | C2' | H9 | 95.5° | 146.4° |
| H9 | C2' | O2' | H10 | 54.7° | 61.1° |
| H9 | C2' | C3' | H11 | 39.7° | 0.2° |
| H11 | C3' | O3' | H12 | 57.9° | 61.2° |
| H11 | C3' | C4' | H13 | 163.4° | 146.6° |
| H13 | C4' | C5' | H14 | 68.2° | 67.3° |
| H13 | C4' | C5' | H15 | 49.8° | 172.6° |
