5GV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.23Å | |
| CAA | CB | sing | 1.53Å | 1.53Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| C | CA | sing | 1.51Å | 1.40Å | |
| C | NAI | sing | 1.35Å | 1.40Å | |
| CA | N | sing | 1.47Å | 1.48Å | |
| NAI | CAO | sing | 1.40Å | 1.40Å | |
| N | CAN | sing | 1.40Å | 1.39Å | |
| CAO | CAN | doub | 1.40Å | 1.39Å | Aromatic |
| CAO | CAG | sing | 1.38Å | 1.39Å | Aromatic |
| CAN | CAF | sing | 1.39Å | 1.39Å | Aromatic |
| CAG | CAM | doub | 1.40Å | 1.39Å | Aromatic |
| CAF | CAE | doub | 1.38Å | 1.39Å | Aromatic |
| CAM | CAE | sing | 1.40Å | 1.39Å | Aromatic |
| CAM | CAK | sing | 1.47Å | 1.39Å | |
| OAB | CAK | doub | 1.22Å | 1.25Å | |
| CAK | OAD | sing | 1.35Å | 1.25Å | |
| NAI | H1 | sing | 0.97Å | 1.00Å | |
| CAG | H2 | sing | 1.08Å | 1.08Å | |
| OAD | H3 | sing | 0.97Å | 0.95Å | |
| CAE | H4 | sing | 1.08Å | 1.08Å | |
| CAF | H5 | sing | 1.08Å | 1.08Å | |
| N | H6 | sing | 0.97Å | 1.00Å | |
| CA | H7 | sing | 1.09Å | 1.10Å | |
| CB | H8 | sing | 1.09Å | 1.10Å | |
| CB | H9 | sing | 1.09Å | 1.10Å | |
| CAA | H10 | sing | 1.09Å | 1.10Å | |
| CAA | H11 | sing | 1.09Å | 1.10Å | |
| CAA | H12 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 119.5° | 119.6° |
| O | C | NAI | 118.1° | 119.7° |
| CAA | CB | CA | 108.4° | 109.5° |
| CAA | CB | H8 | 109.7° | 109.4° |
| CAA | CB | H9 | 109.7° | 109.5° |
| CB | CAA | H10 | 109.5° | 109.5° |
| CB | CAA | H11 | 109.5° | 109.5° |
| CB | CAA | H12 | 109.5° | 109.5° |
| CB | CA | C | 109.2° | 109.5° |
| CB | CA | N | 109.6° | 109.3° |
| CB | CA | H7 | 107.2° | 109.6° |
| CA | CB | H8 | 109.7° | 109.5° |
| CA | CB | H9 | 109.7° | 109.5° |
| CA | C | NAI | 122.4° | 120.7° |
| C | CA | N | 114.1° | 109.3° |
| C | CA | H7 | 108.7° | 109.6° |
| C | NAI | CAO | 121.4° | 120.7° |
| C | NAI | H1 | 119.3° | 119.6° |
| CA | N | CAN | 122.4° | 118.3° |
| CA | N | H6 | 106.1° | 120.8° |
| N | CA | H7 | 107.7° | 109.6° |
| NAI | CAO | CAN | 119.4° | 119.8° |
| NAI | CAO | CAG | 120.5° | 120.4° |
| CAO | NAI | H1 | 119.3° | 119.6° |
| N | CAN | CAO | 119.8° | 118.9° |
| N | CAN | CAF | 119.6° | 120.7° |
| CAN | N | H6 | 106.2° | 121.0° |
| CAN | CAO | CAG | 120.1° | 119.8° |
| CAO | CAN | CAF | 120.6° | 120.5° |
| CAO | CAG | CAM | 119.5° | 119.7° |
| CAO | CAG | H2 | 120.2° | 120.1° |
| CAN | CAF | CAE | 119.4° | 120.0° |
| CAN | CAF | H5 | 120.3° | 120.0° |
| CAG | CAM | CAE | 120.3° | 120.1° |
| CAG | CAM | CAK | 120.4° | 119.9° |
| CAM | CAG | H2 | 120.2° | 120.1° |
| CAF | CAE | CAM | 120.0° | 120.0° |
| CAF | CAE | H4 | 120.0° | 120.0° |
| CAE | CAF | H5 | 120.3° | 120.0° |
| CAE | CAM | CAK | 119.3° | 120.0° |
| CAM | CAE | H4 | 120.0° | 120.0° |
| CAM | CAK | OAB | 120.2° | 120.1° |
| CAM | CAK | OAD | 119.6° | 120.0° |
| OAB | CAK | OAD | 120.2° | 119.9° |
| CAK | OAD | H3 | 109.5° | 117.0° |
| H8 | CB | H9 | 109.5° | 109.5° |
| H10 | CAA | H11 | 109.5° | 109.4° |
| H10 | CAA | H12 | 109.5° | 109.5° |
| H11 | CAA | H12 | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | CB | 51.9° | 91.0° |
| O | C | CA | NAI | 178.6° | 179.7° |
| O | C | CA | N | 175.0° | 149.3° |
| O | C | NAI | CAO | 179.7° | 173.2° |
| O | C | NAI | H1 | 0.3° | 6.8° |
| O | C | CA | H7 | 64.7° | 29.2° |
| CAA | CB | CA | H8 | 119.8° | 120.0° |
| CAA | CB | CA | H9 | 119.9° | 120.0° |
| CAA | CB | CA | C | 67.4° | 175.0° |
| CAA | CB | CA | N | 58.4° | 65.3° |
| CAA | CB | CA | H7 | 175.0° | 54.8° |
| CAA | CB | H8 | H9 | 120.5° | 120.0° |
| CB | CAA | H10 | H11 | 120.0° | 120.0° |
| CB | CAA | H10 | H12 | 120.0° | 120.0° |
| CB | CAA | H11 | H12 | 120.0° | 120.0° |
| CB | CA | C | N | 123.1° | 119.7° |
| CB | CA | C | H7 | 116.6° | 120.2° |
| CB | CA | C | NAI | 129.5° | 89.3° |
| CB | CA | N | H7 | 116.3° | 120.1° |
| CB | CA | N | CAN | 131.4° | 78.8° |
| CB | CA | N | H6 | 106.9° | 101.5° |
| CA | CB | H8 | H9 | 120.5° | 120.0° |
| CA | CB | CAA | H10 | 180.0° | 60.0° |
| CA | CB | CAA | H11 | 60.0° | 60.0° |
| CA | CB | CAA | H12 | 60.0° | 180.0° |
| C | CA | N | H7 | 120.8° | 120.1° |
| CA | C | NAI | CAO | 1.7° | 6.5° |
| C | CA | N | CAN | 8.5° | 41.0° |
| CA | C | NAI | H1 | 178.3° | 173.6° |
| C | CA | N | H6 | 130.2° | 138.7° |
| C | CA | CB | H8 | 52.5° | 55.0° |
| C | CA | CB | H9 | 172.8° | 65.0° |
| NAI | C | CA | N | 6.4° | 30.4° |
| C | NAI | CAO | H1 | 180.0° | 180.0° |
| C | NAI | CAO | CAN | 1.7° | 9.7° |
| C | NAI | CAO | CAG | 178.3° | 170.1° |
| NAI | C | CA | H7 | 113.9° | 150.5° |
| CA | N | CAN | H6 | 121.8° | 179.7° |
| CA | N | CAN | CAO | 5.7° | 28.6° |
| CA | N | CAN | CAF | 175.1° | 152.1° |
| N | CA | CB | H8 | 178.2° | 174.7° |
| N | CA | CB | H9 | 61.5° | 54.6° |
| NAI | CAO | CAN | N | 0.4° | 1.4° |
| NAI | CAO | CAN | CAG | 179.9° | 179.8° |
| NAI | CAO | CAN | CAF | 179.6° | 179.3° |
| NAI | CAO | CAG | CAM | 179.8° | 179.6° |
| NAI | CAO | CAG | H2 | 0.2° | 0.5° |
| N | CAN | CAO | CAF | 179.2° | 179.3° |
| N | CAN | CAO | CAG | 179.7° | 178.8° |
| N | CAN | CAF | CAE | 179.6° | 178.9° |
| N | CAN | CAF | H5 | 0.4° | 1.1° |
| CAN | N | CA | H7 | 112.4° | 161.1° |
| CAN | CAO | CAG | CAM | 0.3° | 0.2° |
| CAO | CAN | CAF | CAE | 0.4° | 0.4° |
| CAN | CAO | NAI | H1 | 178.3° | 170.2° |
| CAN | CAO | CAG | H2 | 179.7° | 179.7° |
| CAO | CAN | CAF | H5 | 179.6° | 179.6° |
| CAO | CAN | N | H6 | 127.4° | 151.1° |
| CAG | CAO | CAN | CAF | 0.4° | 0.5° |
| CAO | CAG | CAM | H2 | 180.0° | 180.0° |
| CAO | CAG | CAM | CAE | 0.1° | 0.1° |
| CAO | CAG | CAM | CAK | 179.6° | 179.9° |
| CAG | CAO | NAI | H1 | 1.7° | 10.0° |
| CAN | CAF | CAE | H5 | 180.0° | 179.9° |
| CAN | CAF | CAE | CAM | 0.2° | 0.0° |
| CAN | CAF | CAE | H4 | 179.8° | 180.0° |
| CAF | CAN | N | H6 | 53.3° | 28.2° |
| CAG | CAM | CAE | CAF | 0.0° | 0.3° |
| CAG | CAM | CAE | CAK | 179.7° | 179.9° |
| CAG | CAM | CAK | OAB | 2.1° | 0.1° |
| CAG | CAM | CAK | OAD | 176.5° | 180.0° |
| CAG | CAM | CAE | H4 | 180.0° | 179.8° |
| CAF | CAE | CAM | H4 | 180.0° | 179.9° |
| CAF | CAE | CAM | CAK | 179.7° | 179.8° |
| CAE | CAM | CAK | OAB | 178.1° | 180.0° |
| CAE | CAM | CAK | OAD | 3.2° | 0.0° |
| CAE | CAM | CAG | H2 | 179.9° | 179.9° |
| CAM | CAE | CAF | H5 | 179.8° | 180.0° |
| CAM | CAK | OAB | OAD | 178.7° | 180.0° |
| CAK | CAM | CAG | H2 | 0.4° | 0.0° |
| CAM | CAK | OAD | H3 | 178.7° | 180.0° |
| CAK | CAM | CAE | H4 | 0.3° | 0.1° |
| OAB | CAK | OAD | H3 | 0.0° | 0.0° |
| H4 | CAE | CAF | H5 | 0.2° | 0.1° |
| H6 | N | CA | H7 | 9.4° | 18.6° |
| H7 | CA | CB | H8 | 65.2° | 65.2° |
| H7 | CA | CB | H9 | 55.2° | 174.8° |
| H8 | CB | CAA | H10 | 60.2° | 180.0° |
| H8 | CB | CAA | H11 | 59.8° | 60.0° |
| H8 | CB | CAA | H12 | 179.8° | 60.0° |
| H9 | CB | CAA | H10 | 60.2° | 60.0° |
| H9 | CB | CAA | H11 | 179.8° | 180.0° |
| H9 | CB | CAA | H12 | 59.9° | 60.0° |
| H10 | CAA | H11 | H12 | 120.0° | 120.0° |
