5GP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.47Å | |
| P | O2P | sing | 1.61Å | 1.52Å | |
| P | O3P | sing | 1.61Å | 1.57Å | |
| P | O5' | sing | 1.61Å | 1.64Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.48Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.50Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.47Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.41Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.43Å | |
| C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.43Å | |
| N1 | C2 | sing | 1.36Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.35Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| N2 | HN22 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.38Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 112.3° | 109.5° |
| O1P | P | O3P | 110.5° | 109.5° |
| O1P | P | O5' | 113.0° | 109.4° |
| O2P | P | O3P | 111.0° | 109.5° |
| O2P | P | O5' | 106.2° | 109.5° |
| P | O2P | HOP2 | 109.5° | 106.7° |
| O3P | P | O5' | 103.6° | 109.5° |
| P | O3P | HOP3 | 109.5° | 106.8° |
| P | O5' | C5' | 121.6° | 106.8° |
| O5' | C5' | C4' | 114.5° | 109.5° |
| O5' | C5' | H5'1 | 107.9° | 109.5° |
| O5' | C5' | H5'2 | 106.7° | 109.5° |
| C4' | C5' | H5'1 | 107.8° | 109.5° |
| C4' | C5' | H5'2 | 106.7° | 109.4° |
| C5' | C4' | O4' | 106.3° | 110.4° |
| C5' | C4' | C3' | 119.7° | 110.5° |
| C5' | C4' | H4' | 102.9° | 110.3° |
| H5'1 | C5' | H5'2 | 113.5° | 109.5° |
| O4' | C4' | C3' | 102.8° | 104.8° |
| O4' | C4' | H4' | 119.8° | 110.4° |
| C4' | O4' | C1' | 109.0° | 105.3° |
| C3' | C4' | H4' | 106.4° | 110.4° |
| C4' | C3' | O3' | 113.9° | 110.5° |
| C4' | C3' | C2' | 104.7° | 104.1° |
| C4' | C3' | H3' | 110.3° | 110.5° |
| O4' | C1' | C2' | 107.9° | 104.9° |
| O4' | C1' | N9 | 111.3° | 110.4° |
| O4' | C1' | H1' | 113.7° | 110.4° |
| O3' | C3' | C2' | 111.0° | 110.6° |
| O3' | C3' | H3' | 103.9° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 106.9° |
| C2' | C3' | H3' | 113.3° | 110.6° |
| C3' | C2' | O2' | 112.2° | 110.5° |
| C3' | C2' | C1' | 102.6° | 104.0° |
| C3' | C2' | H2' | 113.4° | 110.5° |
| O2' | C2' | C1' | 112.7° | 110.8° |
| O2' | C2' | H2' | 103.4° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2' | 112.9° | 110.5° |
| C2' | C1' | N9 | 119.5° | 110.4° |
| C2' | C1' | H1' | 104.1° | 110.4° |
| N9 | C1' | H1' | 100.1° | 110.3° |
| C1' | N9 | C8 | 129.6° | 126.3° |
| C1' | N9 | C4 | 124.8° | 126.3° |
| C8 | N9 | C4 | 105.4° | 107.5° |
| N9 | C8 | N7 | 115.5° | 109.8° |
| N9 | C8 | H8 | 122.2° | 125.1° |
| N9 | C4 | C5 | 105.7° | 106.1° |
| N9 | C4 | N3 | 126.2° | 134.2° |
| N7 | C8 | H8 | 122.3° | 125.1° |
| C8 | N7 | C5 | 102.0° | 109.3° |
| N7 | C5 | C6 | 128.6° | 134.1° |
| N7 | C5 | C4 | 111.4° | 107.3° |
| C6 | C5 | C4 | 120.0° | 118.6° |
| C5 | C6 | O6 | 128.2° | 120.8° |
| C5 | C6 | N1 | 111.5° | 118.3° |
| C5 | C4 | N3 | 128.1° | 119.7° |
| O6 | C6 | N1 | 120.3° | 120.8° |
| C6 | N1 | C2 | 124.0° | 120.3° |
| C6 | N1 | HN1 | 118.0° | 119.8° |
| C2 | N1 | HN1 | 118.0° | 119.8° |
| N1 | C2 | N2 | 114.0° | 119.0° |
| N1 | C2 | N3 | 124.7° | 121.9° |
| N2 | C2 | N3 | 121.3° | 119.1° |
| C2 | N2 | HN21 | 108.6° | 120.0° |
| C2 | N2 | HN22 | 125.7° | 120.0° |
| C2 | N3 | C4 | 111.8° | 121.1° |
| HN21 | N2 | HN22 | 125.7° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 124.1° | 120.0° |
| O1P | P | O2P | O5' | 123.9° | 120.0° |
| O1P | P | O3P | O5' | 121.2° | 120.0° |
| O1P | P | O2P | HOP2 | 103.4° | 180.0° |
| O1P | P | O3P | HOP3 | 56.3° | 60.0° |
| O1P | P | O5' | C5' | 172.0° | 55.0° |
| O2P | P | O3P | O5' | 113.6° | 120.0° |
| O2P | P | O3P | HOP3 | 178.5° | 60.0° |
| O2P | P | O5' | C5' | 64.5° | 65.0° |
| O3P | P | O2P | HOP2 | 20.7° | 60.0° |
| O3P | P | O5' | C5' | 52.4° | 175.0° |
| O5' | P | O2P | HOP2 | 132.7° | 60.0° |
| O5' | P | O3P | HOP3 | 64.9° | 180.0° |
| P | O5' | C5' | C4' | 179.9° | 180.0° |
| P | O5' | C5' | H5'1 | 59.9° | 60.0° |
| P | O5' | C5' | H5'2 | 62.4° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 117.8° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 118.0° | 120.0° |
| O5' | C5' | C4' | O4' | 135.6° | 66.4° |
| O5' | C5' | C4' | C3' | 108.7° | 178.1° |
| O5' | C5' | C4' | H4' | 8.9° | 55.8° |
| C4' | C5' | H5'1 | H5'2 | 117.9° | 120.0° |
| C5' | C4' | O4' | C3' | 126.6° | 119.0° |
| C5' | C4' | O4' | H4' | 115.8° | 122.2° |
| C5' | C4' | C3' | H4' | 115.8° | 122.3° |
| C5' | C4' | O4' | C1' | 149.2° | 159.5° |
| C5' | C4' | C3' | O3' | 86.1° | 98.3° |
| C5' | C4' | C3' | C2' | 152.5° | 142.9° |
| C5' | C4' | C3' | H3' | 30.3° | 24.2° |
| H5'1 | C5' | C4' | O4' | 15.6° | 173.6° |
| H5'1 | C5' | C4' | C3' | 131.3° | 58.1° |
| H5'1 | C5' | C4' | H4' | 111.1° | 64.2° |
| H5'2 | C5' | C4' | O4' | 106.6° | 53.5° |
| H5'2 | C5' | C4' | C3' | 9.1° | 61.9° |
| H5'2 | C5' | C4' | H4' | 126.7° | 175.7° |
| O4' | C4' | C3' | H4' | 126.7° | 118.8° |
| O4' | C4' | C3' | O3' | 156.4° | 142.8° |
| O4' | C4' | C3' | C2' | 35.0° | 24.0° |
| O4' | C4' | C3' | H3' | 87.2° | 94.7° |
| C4' | O4' | C1' | C2' | 1.3° | 40.5° |
| C4' | O4' | C1' | N9 | 134.3° | 159.4° |
| C4' | O4' | C1' | H1' | 113.6° | 78.5° |
| C3' | C4' | O4' | C1' | 22.6° | 40.5° |
| C4' | C3' | O3' | C2' | 117.8° | 114.7° |
| C4' | C3' | O3' | H3' | 120.1° | 122.6° |
| C4' | C3' | C2' | H3' | 120.2° | 118.6° |
| C4' | C3' | O3' | HO3' | 71.1° | 180.0° |
| C4' | C3' | C2' | O2' | 87.1° | 118.8° |
| C4' | C3' | C2' | C1' | 34.1° | 0.1° |
| C4' | C3' | C2' | H2' | 156.2° | 118.6° |
| H4' | C4' | O4' | C1' | 95.0° | 78.4° |
| H4' | C4' | C3' | O3' | 29.7° | 23.9° |
| H4' | C4' | C3' | C2' | 91.7° | 94.8° |
| H4' | C4' | C3' | H3' | 146.1° | 146.5° |
| O4' | C1' | C2' | C3' | 20.3° | 23.9° |
| O4' | C1' | C2' | O2' | 100.6° | 142.6° |
| O4' | C1' | C2' | N9 | 128.4° | 118.9° |
| O4' | C1' | C2' | H1' | 121.1° | 118.9° |
| O4' | C1' | C2' | H2' | 142.7° | 94.7° |
| O4' | C1' | N9 | H1' | 120.5° | 122.2° |
| O4' | C1' | N9 | C8 | 117.9° | 22.1° |
| O4' | C1' | N9 | C4 | 56.2° | 158.0° |
| O3' | C3' | C2' | H3' | 116.5° | 122.7° |
| O3' | C3' | C2' | O2' | 36.2° | 0.1° |
| O3' | C3' | C2' | C1' | 157.4° | 118.8° |
| O3' | C3' | C2' | H2' | 80.5° | 122.7° |
| C2' | C3' | O3' | HO3' | 46.7° | 65.3° |
| C3' | C2' | O2' | C1' | 115.3° | 114.7° |
| C3' | C2' | O2' | H2' | 122.5° | 122.6° |
| C3' | C2' | C1' | H2' | 122.4° | 118.6° |
| C3' | C2' | O2' | HO2' | 119.8° | 61.4° |
| C3' | C2' | C1' | N9 | 108.1° | 142.8° |
| C3' | C2' | C1' | H1' | 141.4° | 95.0° |
| H3' | C3' | O3' | HO3' | 168.8° | 57.4° |
| H3' | C3' | C2' | O2' | 152.6° | 122.6° |
| H3' | C3' | C2' | C1' | 86.1° | 118.5° |
| H3' | C3' | C2' | H2' | 35.9° | 0.0° |
| O2' | C2' | C1' | H2' | 116.7° | 122.7° |
| O2' | C2' | C1' | N9 | 131.0° | 98.5° |
| O2' | C2' | C1' | H1' | 20.5° | 23.7° |
| C1' | C2' | O2' | HO2' | 4.5° | 176.1° |
| C2' | C1' | N9 | H1' | 112.7° | 122.3° |
| C2' | C1' | N9 | C8 | 115.3° | 93.4° |
| C2' | C1' | N9 | C4 | 70.7° | 86.5° |
| H2' | C2' | O2' | HO2' | 117.7° | 61.2° |
| H2' | C2' | C1' | N9 | 14.3° | 24.2° |
| H2' | C2' | C1' | H1' | 96.2° | 146.4° |
| C1' | N9 | C8 | C4 | 174.9° | 180.0° |
| C1' | N9 | C8 | N7 | 174.8° | 180.0° |
| C1' | N9 | C8 | H8 | 5.2° | 0.0° |
| C1' | N9 | C4 | C5 | 175.1° | 180.0° |
| C1' | N9 | C4 | N3 | 4.7° | 0.0° |
| H1' | C1' | N9 | C8 | 2.6° | 144.3° |
| H1' | C1' | N9 | C4 | 176.7° | 35.8° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.1° | 0.0° |
| C8 | N9 | C4 | C5 | 0.1° | 0.0° |
| C8 | N9 | C4 | N3 | 180.0° | 180.0° |
| C4 | N9 | C8 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | H8 | 179.9° | 180.0° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| N9 | C4 | C5 | C6 | 179.9° | 180.0° |
| N9 | C4 | C5 | N3 | 179.8° | 180.0° |
| N9 | C4 | N3 | C2 | 179.9° | 180.0° |
| C8 | N7 | C5 | C6 | 179.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.0° | 0.0° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C6 | C4 | 179.9° | 179.9° |
| N7 | C5 | C6 | O6 | 0.1° | 0.1° |
| N7 | C5 | C6 | N1 | 180.0° | 179.7° |
| N7 | C5 | C4 | N3 | 179.9° | 180.0° |
| C5 | C6 | O6 | N1 | 179.9° | 179.8° |
| C5 | C6 | N1 | C2 | 0.1° | 0.5° |
| C5 | C6 | N1 | HN1 | 179.9° | 179.9° |
| C6 | C5 | C4 | N3 | 0.0° | 0.0° |
| C4 | C5 | C6 | O6 | 180.0° | 180.0° |
| C4 | C5 | C6 | N1 | 0.1° | 0.2° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| O6 | C6 | N1 | C2 | 180.0° | 179.7° |
| O6 | C6 | N1 | HN1 | 0.0° | 0.3° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.4° |
| C6 | N1 | C2 | N2 | 179.9° | 179.7° |
| C6 | N1 | C2 | N3 | 0.0° | 0.6° |
| N1 | C2 | N2 | N3 | 179.9° | 179.7° |
| N1 | C2 | N2 | HN21 | 180.0° | 179.7° |
| N1 | C2 | N2 | HN22 | 0.0° | 0.6° |
| N1 | C2 | N3 | C4 | 0.1° | 0.3° |
| HN1 | N1 | C2 | N2 | 0.1° | 0.3° |
| HN1 | N1 | C2 | N3 | 180.0° | 180.0° |
| C2 | N2 | HN21 | HN22 | 180.0° | 179.7° |
| N2 | C2 | N3 | C4 | 179.8° | 180.0° |
| N3 | C2 | N2 | HN21 | 0.1° | 0.0° |
| N3 | C2 | N2 | HN22 | 179.9° | 179.7° |
