5GM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| CA | C | sing | 1.51Å | 1.42Å | |
| CA | CB | sing | 1.53Å | 1.49Å | |
| CA | CB2 | sing | 1.53Å | 1.50Å | |
| CB | CC | sing | 1.53Å | 1.50Å | |
| CC | CD2 | sing | 1.53Å | 1.50Å | |
| CC | CD | sing | 1.53Å | 1.51Å | |
| CD | CE | sing | 1.53Å | 1.35Å | |
| C | O | doub | 1.21Å | 1.20Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CB | HE6 | sing | 1.09Å | 1.10Å | |
| CC | HBD | sing | 1.09Å | 1.10Å | |
| CD2 | HE8 | sing | 1.09Å | 1.10Å | |
| CD2 | HE9 | sing | 1.09Å | 1.10Å | |
| CD2 | HBE | sing | 1.09Å | 1.10Å | |
| CD | HE7 | sing | 1.09Å | 1.10Å | |
| CD | HBB | sing | 1.09Å | 1.10Å | |
| CE | HBC | sing | 1.09Å | 1.10Å | |
| CB2 | HBF | sing | 1.09Å | 1.10Å | |
| CB2 | HFA | sing | 1.09Å | 1.10Å | |
| CB2 | HFB | sing | 1.09Å | 1.10Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CE | H1 | sing | 1.09Å | 1.10Å | |
| C | OXT | sing | 1.34Å | 1.36Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| CE | H3 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 109.9° | 109.4° |
| N | CA | CB | 108.5° | 109.5° |
| N | CA | CB2 | 106.3° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 112.5° | 109.5° |
| C | CA | CB2 | 112.9° | 109.5° |
| CA | C | O | 123.2° | 120.0° |
| CA | C | OXT | 119.7° | 120.0° |
| CB | CA | CB2 | 106.4° | 109.5° |
| CA | CB | CC | 114.1° | 109.5° |
| CA | CB | HBA | 108.3° | 109.5° |
| CA | CB | HE6 | 108.3° | 109.4° |
| CA | CB2 | HBF | 109.5° | 109.5° |
| CA | CB2 | HFA | 109.5° | 109.4° |
| CA | CB2 | HFB | 109.4° | 109.5° |
| CB | CC | CD2 | 105.0° | 109.5° |
| CB | CC | CD | 112.6° | 109.5° |
| CC | CB | HBA | 108.3° | 109.5° |
| CC | CB | HE6 | 108.3° | 109.5° |
| CB | CC | HBD | 109.7° | 109.5° |
| CD2 | CC | CD | 110.3° | 109.5° |
| CD2 | CC | HBD | 109.7° | 109.5° |
| CC | CD2 | HE8 | 109.5° | 109.5° |
| CC | CD2 | HE9 | 109.5° | 109.4° |
| CC | CD2 | HBE | 109.4° | 109.5° |
| CC | CD | CE | 113.5° | 109.5° |
| CD | CC | HBD | 109.5° | 109.4° |
| CC | CD | HE7 | 108.5° | 109.4° |
| CC | CD | HBB | 108.4° | 109.5° |
| CE | CD | HE7 | 108.5° | 109.5° |
| CE | CD | HBB | 108.5° | 109.5° |
| CD | CE | HBC | 109.5° | 109.5° |
| CD | CE | H1 | 109.5° | 109.5° |
| CD | CE | H3 | 109.5° | 109.5° |
| O | C | OXT | 117.1° | 120.1° |
| H | N | H2 | 109.4° | 111.1° |
| HBA | CB | HE6 | 109.5° | 109.5° |
| HE8 | CD2 | HE9 | 109.4° | 109.5° |
| HE8 | CD2 | HBE | 109.5° | 109.4° |
| HE9 | CD2 | HBE | 109.5° | 109.5° |
| HE7 | CD | HBB | 109.4° | 109.5° |
| HBC | CE | H1 | 109.4° | 109.4° |
| HBC | CE | H3 | 109.5° | 109.5° |
| HBF | CB2 | HFA | 109.4° | 109.5° |
| HBF | CB2 | HFB | 109.5° | 109.5° |
| HFA | CB2 | HFB | 109.5° | 109.5° |
| H1 | CE | H3 | 109.5° | 109.4° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | C | CB | 121.0° | 120.0° |
| N | CA | C | CB2 | 118.5° | 120.0° |
| N | CA | CB | CB2 | 114.0° | 120.0° |
| N | CA | CB | CC | 179.9° | 64.4° |
| N | CA | C | O | 128.7° | 145.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HBA | 59.4° | 55.6° |
| N | CA | CB | HE6 | 59.2° | 175.6° |
| N | CA | CB2 | HBF | 180.0° | 60.0° |
| N | CA | CB2 | HFA | 60.0° | 180.0° |
| N | CA | CB2 | HFB | 60.0° | 60.0° |
| N | CA | C | OXT | 48.7° | 35.0° |
| C | CA | CB | CB2 | 124.1° | 120.0° |
| C | CA | CB | CC | 58.1° | 175.6° |
| CA | C | O | OXT | 177.4° | 180.0° |
| C | CA | N | H | 180.0° | 64.0° |
| C | CA | CB | HBA | 178.8° | 64.3° |
| C | CA | CB | HE6 | 62.6° | 55.7° |
| C | CA | CB2 | HBF | 59.3° | 180.0° |
| C | CA | CB2 | HFA | 60.6° | 60.0° |
| C | CA | CB2 | HFB | 179.4° | 60.0° |
| C | CA | N | H2 | 60.0° | 60.1° |
| CA | C | OXT | HXT | 177.5° | 180.0° |
| CA | CB | CC | HBA | 120.7° | 120.0° |
| CA | CB | CC | HE6 | 120.7° | 119.9° |
| CA | CB | CC | CD2 | 155.3° | 66.6° |
| CA | CB | CC | CD | 84.7° | 173.4° |
| CB | CA | C | O | 110.3° | 25.0° |
| CB | CA | N | H | 56.6° | 176.0° |
| CA | CB | HBA | HE6 | 117.9° | 119.9° |
| CA | CB | CC | HBD | 37.5° | 53.4° |
| CB | CA | CB2 | HBF | 64.5° | 60.0° |
| CB | CA | CB2 | HFA | 175.5° | 60.1° |
| CB | CA | CB2 | HFB | 55.5° | 180.0° |
| CB | CA | N | H2 | 176.6° | 59.9° |
| CB | CA | C | OXT | 72.3° | 155.0° |
| CB2 | CA | CB | CC | 66.1° | 55.6° |
| CB2 | CA | C | O | 10.1° | 95.0° |
| CB2 | CA | N | H | 57.4° | 56.0° |
| CB2 | CA | CB | HBA | 54.6° | 175.6° |
| CB2 | CA | CB | HE6 | 173.3° | 64.4° |
| CA | CB2 | HBF | HFA | 120.0° | 120.0° |
| CA | CB2 | HBF | HFB | 120.0° | 120.0° |
| CA | CB2 | HFA | HFB | 120.0° | 120.0° |
| CB2 | CA | N | H2 | 62.5° | 179.9° |
| CB2 | CA | C | OXT | 167.2° | 85.0° |
| CB | CC | CD2 | CD | 121.5° | 120.0° |
| CB | CC | CD2 | HBD | 117.8° | 120.1° |
| CB | CC | CD | HBD | 122.3° | 120.0° |
| CB | CC | CD | CE | 171.8° | 175.0° |
| CC | CB | HBA | HE6 | 117.9° | 120.0° |
| CB | CC | CD2 | HE8 | 180.0° | 68.6° |
| CB | CC | CD2 | HE9 | 60.0° | 51.4° |
| CB | CC | CD2 | HBE | 60.0° | 171.4° |
| CB | CC | CD | HE7 | 51.2° | 65.0° |
| CB | CC | CD | HBB | 67.6° | 55.0° |
| CD2 | CC | CD | HBD | 120.8° | 119.9° |
| CD2 | CC | CD | CE | 54.9° | 65.0° |
| CD2 | CC | CB | HBA | 34.6° | 53.4° |
| CD2 | CC | CB | HE6 | 84.0° | 173.5° |
| CC | CD2 | HE8 | HE9 | 120.0° | 120.0° |
| CC | CD2 | HE8 | HBE | 120.0° | 120.0° |
| CC | CD2 | HE9 | HBE | 120.0° | 120.0° |
| CD2 | CC | CD | HE7 | 65.7° | 55.0° |
| CD2 | CC | CD | HBB | 175.5° | 175.0° |
| CC | CD | CE | HE7 | 120.6° | 119.9° |
| CC | CD | CE | HBB | 120.6° | 120.1° |
| CD | CC | CB | HBA | 154.6° | 66.6° |
| CD | CC | CB | HE6 | 36.0° | 53.5° |
| CD | CC | CD2 | HE8 | 58.5° | 171.4° |
| CD | CC | CD2 | HE9 | 178.5° | 68.6° |
| CD | CC | CD2 | HBE | 61.5° | 51.4° |
| CC | CD | HE7 | HBB | 118.1° | 120.0° |
| CC | CD | CE | HBC | 180.0° | 60.0° |
| CC | CD | CE | H1 | 60.0° | 60.0° |
| CC | CD | CE | H3 | 60.0° | 180.0° |
| CE | CD | CC | HBD | 65.9° | 55.0° |
| CE | CD | HE7 | HBB | 118.2° | 120.0° |
| CD | CE | HBC | H1 | 120.0° | 120.0° |
| CD | CE | HBC | H3 | 120.0° | 120.0° |
| CD | CE | H1 | H3 | 120.0° | 120.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| HBA | CB | CC | HBD | 83.2° | 173.5° |
| HE6 | CB | CC | HBD | 158.2° | 66.5° |
| HBD | CC | CD2 | HE8 | 62.2° | 51.5° |
| HBD | CC | CD2 | HE9 | 57.8° | 171.5° |
| HBD | CC | CD2 | HBE | 177.8° | 68.5° |
| HBD | CC | CD | HE7 | 173.5° | 174.9° |
| HBD | CC | CD | HBB | 54.7° | 65.1° |
| HE8 | CD2 | HE9 | HBE | 120.0° | 120.0° |
| HE7 | CD | CE | HBC | 59.4° | 179.9° |
| HE7 | CD | CE | H1 | 179.4° | 59.9° |
| HE7 | CD | CE | H3 | 60.6° | 60.0° |
| HBB | CD | CE | HBC | 59.4° | 60.0° |
| HBB | CD | CE | H1 | 60.6° | 180.0° |
| HBB | CD | CE | H3 | 179.4° | 60.0° |
| HBC | CE | H1 | H3 | 120.0° | 120.0° |
| HBF | CB2 | HFA | HFB | 120.0° | 120.0° |
