Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5GK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O01C01doub1.22Å1.39Å
C01N01sing1.35Å1.39Å
C01C02sing1.41Å1.47Å
N01C04sing1.36Å1.45Å
C02C03doub1.36Å1.40Å
C04C05doub1.35Å1.43Å
C03C05sing1.40Å1.43Å
C05C06sing1.51Å1.55Å
C06N02sing1.47Å1.30Å
N02C07sing1.47Å1.31Å
N02C10sing1.47Å1.37Å
C07C08sing1.53Å1.52Å
C10C09sing1.53Å1.58Å
C08N03sing1.47Å1.44Å
C09N03sing1.47Å1.44Å
N03C11sing1.47Å1.48Å
C11C12sing1.53Å1.51Å
C11C23sing1.53Å1.53Å
C12C13sing1.53Å1.55Å
C23C22sing1.53Å1.58Å
C13C14sing1.53Å1.52Å
C16C17doub1.38Å1.52ÅAromatic
C16C15sing1.38Å1.32ÅAromatic
C22C14sing1.53Å1.54Å
C17C18sing1.38Å1.32ÅAromatic
C14C15sing1.51Å1.50Å
C15C21doub1.38Å1.51ÅAromatic
C18C19doub1.38Å1.53ÅAromatic
C21C19sing1.38Å1.29ÅAromatic
C19C20sing1.51Å1.54Å
C20F02sing1.40Å1.37Å
C20F03sing1.40Å1.37Å
C20F01sing1.40Å1.36Å
N01H1sing0.97Å1.00Å
C02H2sing1.08Å1.08Å
C03H4sing1.08Å1.08Å
C04H6sing1.08Å1.08Å
C06H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
C07H9sing1.09Å1.10Å
C07H10sing1.09Å1.10Å
C08H11sing1.09Å1.10Å
C08H12sing1.09Å1.10Å
C09H13sing1.09Å1.10Å
C09H14sing1.09Å1.10Å
C10H15sing1.09Å1.10Å
C10H16sing1.09Å1.10Å
C11H17sing1.09Å1.10Å
C12H18sing1.09Å1.10Å
C12H19sing1.09Å1.10Å
C13H20sing1.09Å1.10Å
C13H21sing1.09Å1.10Å
C14H22sing1.09Å1.10Å
C16H23sing1.08Å1.08Å
C17H24sing1.08Å1.08Å
C18H25sing1.08Å1.08Å
C21H26sing1.08Å1.08Å
C22H27sing1.09Å1.10Å
C22H28sing1.09Å1.10Å
C23H29sing1.09Å1.10Å
C23H30sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O01C01N01119.1°120.0°
O01C01C02119.9°120.0°
N01C01C02121.0°120.0°
C01N01C04119.5°120.7°
C01N01H1120.2°119.6°
C01C02C03119.1°119.3°
C01C02H2120.5°120.3°
N01C04C05119.7°120.7°
C04N01H1120.2°119.6°
N01C04H6120.2°119.7°
C02C03C05120.1°119.3°
C03C02H2120.5°120.4°
C02C03H4119.9°120.3°
C04C05C03120.6°120.0°
C04C05C06121.0°120.0°
C05C04H6120.1°119.6°
C03C05C06118.5°120.0°
C05C03H4120.0°120.4°
C05C06N02113.4°109.4°
C05C06H7108.5°109.4°
C05C06H8108.5°109.4°
C06N02C07105.9°111.0°
C06N02C10105.7°111.0°
N02C06H7108.5°109.5°
N02C06H8108.5°109.5°
C07N02C10118.9°110.9°
N02C07C08120.3°109.4°
N02C07H9106.7°109.5°
N02C07H10106.7°109.5°
N02C10C09118.9°109.4°
N02C10H15107.1°109.5°
N02C10H16107.1°109.5°
C07C08N03112.0°109.3°
C08C07H9106.7°109.4°
C08C07H10106.7°109.5°
C07C08H11108.8°109.5°
C07C08H12108.8°109.5°
C10C09N03112.7°109.4°
C10C09H13108.7°109.5°
C10C09H14108.7°109.5°
C09C10H15107.1°109.5°
C09C10H16107.1°109.5°
C08N03C09107.1°110.9°
C08N03C11111.2°111.0°
N03C08H11108.8°109.5°
N03C08H12108.8°109.5°
C09N03C11110.4°111.0°
N03C09H13108.7°109.5°
N03C09H14108.7°109.5°
N03C11C12112.8°109.5°
N03C11C23112.6°109.4°
N03C11H17108.0°109.4°
C12C11C23108.2°109.5°
C11C12C13113.5°109.5°
C12C11H17107.6°109.5°
C11C12H18108.5°109.5°
C11C12H19108.5°109.5°
C11C23C22112.8°109.5°
C23C11H17107.4°109.5°
C11C23H29108.6°109.5°
C11C23H30108.6°109.4°
C12C13C14115.7°109.5°
C13C12H18108.4°109.5°
C13C12H19108.5°109.4°
C12C13H20107.9°109.4°
C12C13H21107.9°109.5°
C23C22C14116.6°109.5°
C23C22H27107.7°109.5°
C23C22H28107.7°109.4°
C22C23H29108.6°109.5°
C22C23H30108.6°109.4°
C13C14C22117.7°109.5°
C13C14C15101.5°109.5°
C14C13H20107.9°109.4°
C14C13H21107.9°109.5°
C13C14H22110.6°109.5°
C17C16C15118.6°120.1°
C16C17C18119.0°119.9°
C17C16H23120.7°120.0°
C16C17H24120.5°120.0°
C16C15C14120.1°120.0°
C16C15C21123.1°120.0°
C15C16H23120.7°120.0°
C22C14C15105.3°109.5°
C22C14H22110.2°109.5°
C14C22H27107.6°109.5°
C14C22H28107.7°109.4°
C17C18C19120.4°120.0°
C18C17H24120.5°120.0°
C17C18H25119.8°120.0°
C14C15C21116.8°120.0°
C15C14H22110.9°109.5°
C15C21C19117.4°120.0°
C15C21H26121.3°120.0°
C18C19C21121.6°120.0°
C18C19C20121.5°120.0°
C19C18H25119.8°120.0°
C21C19C20116.9°120.0°
C19C21H26121.3°120.0°
C19C20F02109.2°109.5°
C19C20F03108.0°109.5°
C19C20F01107.9°109.5°
F02C20F03110.8°109.5°
F02C20F01110.0°109.5°
F03C20F01110.8°109.5°
H7C06H8109.5°109.6°
H9C07H10109.5°109.5°
H11C08H12109.5°109.5°
H13C09H14109.5°109.5°
H15C10H16109.5°109.5°
H18C12H19109.5°109.5°
H20C13H21109.4°109.5°
H27C22H28109.5°109.5°
H29C23H30109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O01C01N01C02179.8°179.7°
O01C01N01C04179.8°179.7°
O01C01C02C03179.9°179.7°
O01C01N01H10.2°0.3°
O01C01C02H20.1°0.4°
C01N01C04H1180.0°180.0°
N01C01C02C030.2°0.0°
C01N01C04C050.1°0.0°
N01C01C02H2179.8°180.0°
C01N01C04H6179.9°180.0°
C02C01N01C040.0°0.0°
C01C02C03H2180.0°179.9°
C01C02C03C050.3°0.0°
C02C01N01H1180.0°179.9°
C01C02C03H4179.7°179.9°
N01C04C05H6180.0°179.9°
N01C04C05C030.0°0.0°
N01C04C05C06179.7°180.0°
C02C03C05C040.2°0.0°
C02C03C05H4180.0°180.0°
C02C03C05C06179.9°180.0°
C04C05C03C06179.6°179.9°
C04C05C06N0223.0°95.0°
C05C04N01H1180.0°179.9°
C04C05C03H4179.8°179.9°
C04C05C06H7143.5°25.0°
C04C05C06H897.6°145.1°
C03C05C06N02157.4°85.0°
C05C03C02H2179.7°180.0°
C03C05C04H6180.0°180.0°
C03C05C06H736.8°155.0°
C03C05C06H882.0°35.0°
C05C06N02H7120.6°120.0°
C05C06N02H8120.6°119.9°
C05C06N02C07116.3°170.0°
C05C06N02C10116.6°66.2°
C06C05C03H40.1°0.0°
C06C05C04H60.3°0.1°
C05C06H7H8118.2°120.0°
C06N02C07C10118.7°123.9°
C06N02C07C08138.1°64.5°
C06N02C10C09132.0°64.5°
N02C06H7H8118.2°120.0°
C06N02C07H916.6°55.4°
C06N02C07H10100.4°175.5°
C06N02C10H15106.7°175.5°
C06N02C10H1610.6°55.4°
N02C07C08H9121.5°119.9°
N02C07C08H10121.5°120.0°
C07N02C10C0913.2°59.3°
N02C07C08N0343.9°58.4°
C07N02C06H7123.1°50.0°
C07N02C06H84.3°70.1°
N02C07H9H10115.1°120.1°
N02C07C08H11164.3°178.4°
N02C07C08H1276.5°61.5°
C07N02C10H15134.6°60.6°
C07N02C10H16108.1°179.3°
C10N02C07C0819.5°59.4°
N02C10C09H15121.3°119.9°
N02C10C09H16121.3°120.0°
N02C10C09N0331.3°58.4°
C10N02C06H73.9°173.8°
C10N02C06H8122.8°53.7°
C10N02C07H9102.0°179.3°
C10N02C07H10141.0°60.7°
N02C10C09H1389.2°61.6°
N02C10C09H14151.7°178.3°
N02C10H15H16115.8°120.0°
C07C08N03H11120.4°119.9°
C07C08N03H12120.4°120.0°
C07C08N03C0958.5°59.4°
C07C08N03C1162.2°176.8°
C08C07H9H10115.1°120.1°
C07C08H11H12118.8°120.1°
C10C09N03C0852.5°59.3°
C10C09N03H13120.5°120.0°
C10C09N03H14120.5°120.0°
C10C09N03C1168.7°176.8°
C10C09H13H14118.5°120.1°
C09C10H15H16115.7°120.1°
C08N03C09C11121.2°123.9°
C08N03C11C1261.8°58.1°
C08N03C11C23175.4°178.1°
N03C08C07H977.6°178.4°
N03C08C07H10165.4°61.6°
N03C08H11H12118.8°120.1°
C08N03C09H1368.0°60.6°
C08N03C09H14173.0°179.3°
C08N03C11H1757.0°61.9°
C09N03C11C12179.4°178.1°
C09N03C11C2356.6°58.1°
C09N03C08H11178.9°179.3°
C09N03C08H1261.9°60.6°
N03C09H13H14118.5°120.1°
N03C09C10H15152.6°61.6°
N03C09C10H1690.1°178.4°
C09N03C11H1761.8°61.9°
N03C11C12C23125.3°120.0°
N03C11C12H17119.0°120.0°
N03C11C23H17118.7°119.9°
N03C11C12C1362.4°60.0°
N03C11C23C2267.3°60.1°
C11N03C08H1158.2°56.8°
C11N03C08H12177.4°63.3°
C11N03C09H13170.8°63.2°
C11N03C09H1451.7°56.8°
N03C11C12H18177.0°180.0°
N03C11C12H1958.2°60.0°
N03C11C23H2953.2°60.0°
N03C11C23H30172.2°180.0°
C12C11C23H17115.9°120.1°
C11C12C13H18120.6°120.0°
C11C12C13H19120.6°120.0°
C12C11C23C2258.1°59.9°
C11C12C13C1445.7°60.0°
C11C12H18H19118.2°120.0°
C11C12C13H20166.6°180.0°
C11C12C13H2175.2°60.0°
C12C11C23H29178.6°180.0°
C12C11C23H3062.4°60.0°
C23C11C12C1362.8°60.0°
C11C23C22H29120.5°120.1°
C11C23C22H30120.5°120.0°
C11C23C22C1437.7°59.9°
C23C11C12H1857.8°60.1°
C23C11C12H19176.6°179.9°
C11C23C22H2783.3°180.0°
C11C23C22H28158.8°60.0°
C11C23H29H30118.5°119.9°
C12C13C14H20120.9°119.9°
C12C13C14H21120.9°120.0°
C12C13C14C2223.3°60.0°
C12C13C14C15137.6°180.0°
C13C12C11H17178.6°179.9°
C13C12H18H19118.2°120.0°
C12C13H20H21117.2°120.1°
C12C13C14H22104.6°60.0°
C23C22C14C1319.9°60.0°
C23C22C14H27121.0°120.0°
C23C22C14H28121.1°120.0°
C23C22C14C15132.1°179.9°
C22C23C11H17174.0°180.0°
C23C22C14H22108.2°60.0°
C23C22H27H28116.8°120.0°
C22C23H29H30118.5°120.0°
C13C14C15C1664.8°60.2°
C13C14C22C15112.3°120.0°
C13C14C22H22128.1°120.0°
C13C14C15H22117.5°120.0°
C13C14C15C21113.9°120.0°
C14C13C12H1874.9°60.0°
C14C13C12H19166.3°180.0°
C14C13H20H21117.2°120.0°
C13C14C22H27101.1°180.0°
C13C14C22H28141.0°60.0°
C17C16C15H23180.0°180.0°
C16C17C18H24180.0°180.0°
C17C16C15C14179.5°180.0°
C17C16C15C210.9°0.2°
C16C17C18C190.4°0.0°
C16C17C18H25179.6°179.9°
C16C15C14C2258.4°59.8°
C15C16C17C180.2°0.0°
C16C15C14C21178.7°179.8°
C16C15C21C190.8°0.5°
C16C15C14H22177.6°179.8°
C15C16C17H24179.7°180.0°
C16C15C21H26179.2°179.8°
C22C14C15H22119.2°120.0°
C22C14C15C21122.8°120.0°
C22C14C13H20144.2°180.0°
C22C14C13H2197.7°60.0°
C14C22H27H28116.7°120.0°
C14C22C23H29158.2°180.0°
C14C22C23H3082.8°60.0°
C17C18C19H25180.0°179.9°
C17C18C19C210.5°0.3°
C17C18C19C20180.0°180.0°
C18C17C16H23179.8°180.0°
C14C15C21C19179.5°179.8°
C15C14C13H20101.4°60.1°
C15C14C13H2116.7°60.0°
C14C15C16H230.5°0.0°
C14C15C21H260.5°0.0°
C15C14C22H2711.1°60.0°
C15C14C22H28106.8°60.0°
C15C21C19C180.1°0.5°
C15C21C19H26180.0°179.7°
C15C21C19C20179.5°179.7°
C21C15C14H223.6°0.0°
C21C15C16H23179.2°179.7°
C18C19C21C20179.6°179.8°
C18C19C20F0254.8°0.0°
C18C19C20F0365.8°120.0°
C18C19C20F01174.3°120.0°
C19C18C17H24179.6°180.0°
C18C19C21H26179.9°179.8°
C21C19C20F02125.6°179.8°
C21C19C20F03113.7°59.8°
C21C19C20F016.1°60.2°
C21C19C18H25179.5°179.8°
C19C20F02F03118.9°120.0°
C19C20F02F01118.3°120.0°
C19C20F03F01118.0°120.0°
C20C19C18H250.0°0.1°
C20C19C21H260.5°0.0°
F02C20F03F01122.4°120.0°
H1N01C04H60.1°0.0°
H2C02C03H40.3°0.0°
H9C07C08H1142.7°61.7°
H9C07C08H12162.0°58.4°
H10C07C08H1174.2°58.4°
H10C07C08H1245.1°178.4°
H13C09C10H1532.1°178.5°
H13C09C10H16149.4°58.4°
H14C09C10H1586.9°58.4°
H14C09C10H1630.4°61.7°
H17C11C12H1858.0°60.0°
H17C11C12H1960.8°60.0°
H17C11C23H2965.5°59.9°
H17C11C23H3053.5°60.0°
H18C12C13H2046.0°59.9°
H18C12C13H21164.2°180.0°
H19C12C13H2072.8°60.1°
H19C12C13H2145.4°60.0°
H20C13C14H2216.3°60.0°
H21C13C14H22134.4°180.0°
H22C14C22H27130.8°60.0°
H22C14C22H2812.9°180.0°
H23C16C17H240.2°0.0°
H24C17C18H250.4°0.0°
H27C22C23H2937.2°59.9°
H27C22C23H30156.2°60.0°
H28C22C23H2980.8°60.1°
H28C22C23H3038.3°180.0°

246905

PDB entries from 2025-12-31

PDB statisticsPDBj update infoContact PDBjnumon