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5GD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C22O3sing1.43Å1.46Å
O3C21sing1.36Å1.42Å
O1C5doub1.22Å1.26Å
C21C23doub1.38Å1.39ÅAromatic
C21C4sing1.40Å1.35ÅAromatic
C5C4sing1.47Å1.45Å
C5Nsing1.35Å1.37Å
C23C1sing1.39Å1.41ÅAromatic
C4C3doub1.42Å1.43ÅAromatic
NC6sing1.37Å1.39Å
C1Osing1.36Å1.34Å
C1C2doub1.38Å1.36ÅAromatic
C3C2sing1.40Å1.38ÅAromatic
C3N1sing1.35Å1.34Å
C6N1doub1.31Å1.32Å
C6C7sing1.48Å1.48Å
OCsing1.43Å1.45Å
C20C7doub1.40Å1.36ÅAromatic
C20C18sing1.38Å1.38ÅAromatic
C19C18sing1.51Å1.49Å
C7C8sing1.40Å1.43ÅAromatic
C18C11doub1.39Å1.42ÅAromatic
C8C9doub1.38Å1.38ÅAromatic
C11C9sing1.39Å1.39ÅAromatic
C11O2sing1.36Å1.37Å
C9C10sing1.51Å1.55Å
O2C12sing1.43Å1.43Å
C17C16sing1.55Å1.52Å
C17N2sing1.48Å1.49Å
C12C13sing1.53Å1.55Å
C16C15sing1.55Å1.51Å
N2C13sing1.47Å1.46Å
N2C14sing1.47Å1.48Å
C15C14sing1.54Å1.52Å
C2H1sing1.08Å1.08Å
C8H2sing1.08Å1.08Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C10H5sing1.09Å1.10Å
C10H6sing1.09Å1.10Å
C10H7sing1.09Å1.10Å
C13H8sing1.09Å1.10Å
C13H9sing1.09Å1.10Å
C14H10sing1.09Å1.10Å
C14H11sing1.09Å1.10Å
C19H12sing1.09Å1.10Å
C19H13sing1.09Å1.10Å
C19H14sing1.09Å1.10Å
C20H15sing1.08Å1.08Å
C17H16sing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C22H18sing1.09Å1.10Å
C22H19sing1.09Å1.10Å
C22H20sing1.09Å1.10Å
C23H21sing1.08Å1.08Å
CH22sing1.09Å1.10Å
CH23sing1.09Å1.10Å
CH24sing1.09Å1.10Å
NH25sing0.97Å1.00Å
C16H27sing1.09Å1.10Å
C16H28sing1.09Å1.10Å
C15H29sing1.09Å1.10Å
C15H30sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C22O3C21118.8°116.9°
O3C22H18109.5°109.4°
O3C22H19109.5°109.5°
O3C22H20109.5°109.4°
O3C21C23117.3°120.3°
O3C21C4120.0°120.2°
O1C5C4122.0°121.2°
O1C5N116.4°121.2°
C23C21C4122.7°119.5°
C21C23C1117.9°120.4°
C21C23H21121.0°119.7°
C21C4C5126.3°121.7°
C21C4C3120.0°120.1°
C4C5N121.1°117.6°
C5C4C3113.5°118.2°
C5NC6121.0°120.5°
C5NH25119.5°119.7°
C23C1O111.0°119.6°
C23C1C2118.6°120.8°
C1C23H21121.1°119.8°
C4C3C2116.2°119.4°
C4C3N1122.2°119.1°
NC6N1118.8°123.0°
NC6C7119.3°118.5°
C6NH25119.5°119.8°
OC1C2130.4°119.6°
C1OC115.2°117.0°
C1C2C3124.3°119.8°
C1C2H1117.8°120.1°
C2C3N1121.5°121.5°
C3C2H1117.9°120.1°
C3N1C6123.4°121.5°
N1C6C7121.9°118.5°
C6C7C20124.5°120.1°
C6C7C8115.7°120.1°
OCH22109.5°109.5°
OCH23109.5°109.5°
OCH24109.5°109.5°
C7C20C18124.6°119.9°
C20C7C8119.5°119.8°
C7C20H15117.7°120.0°
C20C18C19121.4°119.9°
C20C18C11115.1°120.1°
C18C20H15117.7°120.1°
C19C18C11123.3°120.0°
C18C19H12109.5°109.4°
C18C19H13109.5°109.5°
C18C19H14109.5°109.5°
C7C8C9117.6°119.9°
C7C8H2121.3°120.0°
C18C11C9121.6°120.2°
C18C11O2116.7°119.9°
C8C9C11121.5°120.1°
C8C9C10113.9°120.0°
C9C8H2121.2°120.0°
C9C11O2121.6°119.9°
C11C9C10124.6°120.0°
C11O2C12114.5°117.0°
C9C10H5109.5°109.4°
C9C10H6109.5°109.5°
C9C10H7109.5°109.5°
O2C12C13107.0°109.5°
O2C12H3110.1°109.5°
O2C12H4110.1°109.5°
C16C17N2106.6°104.8°
C17C16C15102.0°101.6°
C16C17H16110.2°110.4°
C16C17H17110.2°110.3°
C17C16H27111.3°111.0°
C17C16H28111.3°111.0°
C17N2C13109.4°111.0°
C17N2C14109.1°108.6°
N2C17H16110.2°110.5°
N2C17H17110.2°110.3°
C12C13N2107.5°109.4°
C13C12H3110.1°109.5°
C13C12H4110.1°109.5°
C12C13H8110.0°109.4°
C12C13H9110.0°109.5°
C16C15C14105.0°103.0°
C15C16H27111.3°110.9°
C15C16H28111.3°111.1°
C16C15H29110.6°110.7°
C16C15H30110.6°110.7°
C13N2C14110.7°111.0°
N2C13H8109.9°109.4°
N2C13H9110.0°109.5°
N2C14C15101.7°107.4°
N2C14H10111.4°109.9°
N2C14H11111.4°109.9°
C15C14H10111.4°109.9°
C15C14H11111.4°109.9°
C14C15H29110.6°110.6°
C14C15H30110.6°110.8°
H3C12H4109.5°109.5°
H5C10H6109.5°109.4°
H5C10H7109.5°109.5°
H6C10H7109.4°109.5°
H8C13H9109.5°109.5°
H10C14H11109.5°109.8°
H12C19H13109.5°109.5°
H12C19H14109.4°109.5°
H13C19H14109.5°109.5°
H16C17H17109.5°110.4°
H18C22H19109.5°109.6°
H18C22H20109.4°109.5°
H19C22H20109.5°109.5°
H22CH23109.5°109.5°
H22CH24109.4°109.5°
H23CH24109.4°109.4°
H27C16H28109.5°110.9°
H29C15H30109.5°110.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C22O3C21C2312.2°0.1°
C22O3C21C4168.6°179.1°
O3C22H18H19120.0°120.0°
O3C22H18H20120.0°119.9°
O3C22H19H20120.0°119.9°
O3C21C23C4179.1°179.1°
O3C21C4C50.6°0.3°
O3C21C23C1176.3°180.0°
O3C21C4C3175.8°179.7°
C21O3C22H18180.0°60.1°
C21O3C22H1960.0°60.0°
C21O3C22H2060.0°180.0°
O3C21C23H213.7°0.9°
O1C5C4C2111.0°0.0°
O1C5C4N171.5°180.0°
O1C5C4C3173.6°179.9°
O1C5NC6175.6°179.7°
O1C5NH254.4°0.0°
C23C21C4C5179.7°179.4°
C21C23C1H21180.0°179.1°
C23C21C4C35.1°0.6°
C21C23C1O179.9°179.5°
C21C23C1C21.6°0.6°
C21C4C5C3175.4°179.9°
C21C4C5N177.4°180.0°
C4C21C23C14.6°0.9°
C21C4C3C22.7°0.1°
C21C4C3N1175.3°179.7°
C4C21C23H21175.4°180.0°
C4C5NC63.6°0.3°
C5C4C3C2178.4°180.0°
C5C4C3N10.4°0.2°
C4C5NH25176.4°180.0°
NC5C4C32.0°0.0°
C5NC6H25180.0°179.7°
C5NC6N12.7°0.3°
C5NC6C7179.5°180.0°
C23C1OC2178.0°179.9°
C23C1C2C30.6°0.0°
C23C1OC178.6°0.1°
C23C1C2H1179.4°179.9°
C4C3C2C10.1°0.2°
C4C3C2N1178.0°179.8°
C4C3N1C61.4°0.2°
C4C3C2H1179.9°179.8°
NC6N1C30.1°0.1°
NC6N1C7176.8°179.6°
NC6C7C2016.9°180.0°
NC6C7C8156.4°0.5°
OC1C2C3177.3°180.0°
OC1C2H12.8°0.0°
OC1C23H210.1°0.4°
C1OCH22180.0°60.0°
C1OCH2360.0°60.1°
C1OCH2460.0°180.0°
C1C2C3H1180.0°179.9°
C1C2C3N1178.1°180.0°
C2C1OC0.6°180.0°
C2C1C23H21178.4°179.7°
C2C3N1C6179.3°180.0°
C3N1C6C7176.9°179.7°
N1C3C2H11.9°0.0°
N1C6C7C20166.3°0.3°
N1C6C7C820.3°179.2°
N1C6NH25177.4°180.0°
C6C7C20C8173.1°179.5°
C6C7C20C18179.5°180.0°
C6C7C8C9178.8°179.9°
C6C7C8H21.2°0.3°
C6C7C20H150.5°0.1°
C7C6NH250.5°0.3°
OCH22H23120.0°120.1°
OCH22H24120.0°120.0°
OCH23H24120.0°120.0°
C7C20C18H15180.0°180.0°
C7C20C18C19178.5°179.7°
C7C20C18C113.6°0.3°
C20C7C8C95.1°0.6°
C20C7C8H2174.9°179.7°
C20C18C19C11174.6°180.0°
C18C20C7C86.4°0.6°
C20C18C11C90.3°0.0°
C20C18C11O2177.5°180.0°
C20C18C19H1287.4°90.0°
C20C18C19H13152.6°150.0°
C20C18C19H1432.6°30.0°
C19C18C11C9174.6°180.0°
C19C18C11O22.6°0.1°
C18C19H12H13120.0°120.0°
C18C19H12H14120.0°120.0°
C18C19H13H14120.0°120.0°
C19C18C20H151.5°0.3°
C7C8C9H2180.0°179.7°
C7C8C9C111.6°0.3°
C7C8C9C10176.1°179.8°
C8C7C20H15173.6°179.4°
C18C11C9C81.1°0.0°
C18C11C9O2177.0°179.9°
C18C11C9C10178.5°179.9°
C18C11O2C1294.9°90.0°
C11C18C19H1287.2°90.0°
C11C18C19H1332.8°30.0°
C11C18C19H14152.8°150.0°
C11C18C20H15176.5°179.7°
C8C9C11C10177.4°179.9°
C8C9C11O2178.2°179.9°
C8C9C10H589.1°90.0°
C8C9C10H6150.9°150.0°
C8C9C10H731.0°30.0°
C9C11O2C1282.3°90.0°
C11C9C8H2178.4°180.0°
C11C9C10H588.5°90.0°
C11C9C10H631.5°29.9°
C11C9C10H7151.5°150.0°
O2C11C9C104.4°0.0°
C11O2C12C13158.5°179.9°
C11O2C12H381.9°60.0°
C11O2C12H438.8°60.0°
C10C9C8H23.9°0.1°
C9C10H5H6120.0°120.0°
C9C10H5H7120.0°120.0°
C9C10H6H7120.0°120.0°
O2C12C13H3119.6°120.0°
O2C12C13H4119.6°120.0°
O2C12C13N240.9°65.0°
O2C12H3H4121.1°120.0°
O2C12C13H8160.6°175.0°
O2C12C13H978.8°55.0°
C16C17N2H16119.6°118.9°
C16C17N2H17119.6°118.7°
C17C16C15H27118.8°118.0°
C17C16C15H28118.8°118.2°
C16C17N2C13119.4°146.3°
C16C17N2C141.8°24.0°
C17C16C15C1437.4°35.5°
C16C17H16H17121.3°122.3°
C17C16H27H28123.5°123.9°
C17C16C15H29156.7°82.8°
C17C16C15H3081.9°154.0°
C17N2C13C1264.3°170.0°
N2C17C16C1521.9°36.9°
C17N2C13C14120.2°120.8°
C17N2C14C1524.5°1.0°
C17N2C13H855.4°50.1°
C17N2C13H9176.0°70.0°
C17N2C14H10143.2°118.4°
C17N2C14H1194.2°120.6°
N2C17H16H17121.3°122.3°
N2C17C16H2796.9°81.0°
N2C17C16H28140.7°155.2°
C12C13N2H8119.7°119.9°
C12C13N2H9119.7°120.0°
C12C13N2C14175.5°69.2°
C13C12H3H4121.1°120.0°
C12C13H8H9120.9°120.1°
C16C15C14N238.5°22.2°
C16C15C14H29119.3°118.3°
C16C15C14H30119.3°118.4°
C16C15C14H10157.2°141.7°
C16C15C14H1180.3°97.3°
C15C16C17H1697.7°155.9°
C15C16C17H17141.4°81.8°
C15C16H27H28123.5°123.9°
C16C15H29H30122.1°123.1°
C13N2C14C1595.9°123.3°
N2C13C12H378.7°175.0°
N2C13C12H4160.5°55.0°
N2C13H8H9120.9°120.0°
C13N2C14H1022.8°3.8°
C13N2C14H11145.4°117.2°
C13N2C17H160.2°94.8°
C13N2C17H17121.1°27.6°
N2C14C15H10118.7°119.5°
N2C14C15H11118.7°119.5°
C14N2C13H864.8°170.9°
C14N2C13H955.8°50.8°
N2C14H10H11123.7°121.0°
C14N2C17H16121.3°142.9°
C14N2C17H17117.8°94.7°
N2C14C15H29157.8°96.1°
N2C14C15H3080.8°140.7°
C15C14H10H11123.6°121.0°
C14C15C16H2781.4°82.5°
C14C15C16H28156.2°153.7°
C14C15H29H30122.0°123.3°
H3C12C13H841.0°55.1°
H3C12C13H9161.6°65.0°
H4C12C13H879.8°65.0°
H4C12C13H940.8°175.0°
H5C10H6H7120.0°120.0°
H10C14C15H2983.5°23.4°
H10C14C15H3037.9°99.9°
H11C14C15H2939.0°144.4°
H11C14C15H30160.4°21.1°
H12C19H13H14120.0°120.0°
H16C17C16H27143.5°38.0°
H16C17C16H2821.1°85.8°
H17C17C16H2722.6°160.3°
H17C17C16H2899.8°36.5°
H18C22H19H20120.0°120.1°
H22CH23H24119.9°120.0°
H27C16C15H2937.9°159.2°
H27C16C15H30159.4°36.0°
H28C16C15H2984.5°35.4°
H28C16C15H3036.9°87.8°

222415

PDB entries from 2024-07-10

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