5GA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N3 | C9 | sing | 1.38Å | 1.34Å | |
S | C9 | sing | 1.71Å | 1.74Å | Aromatic |
S | C8 | sing | 1.76Å | 1.75Å | Aromatic |
C9 | N2 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | C5 | sing | 1.47Å | 1.47Å | |
C8 | C10 | doub | 1.37Å | 1.37Å | Aromatic |
N2 | C10 | sing | 1.32Å | 1.38Å | Aromatic |
C5 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.40Å | Aromatic |
N1 | C1 | sing | 1.34Å | 1.37Å | Aromatic |
C6 | C7 | doub | 1.36Å | 1.36Å | Aromatic |
C1 | C2 | doub | 1.41Å | 1.41Å | Aromatic |
C1 | C | sing | 1.42Å | 1.41Å | Aromatic |
C7 | C | sing | 1.41Å | 1.41Å | Aromatic |
C2 | C3 | sing | 1.37Å | 1.36Å | Aromatic |
C | N | doub | 1.33Å | 1.37Å | Aromatic |
C3 | C4 | doub | 1.39Å | 1.39Å | Aromatic |
N | C4 | sing | 1.31Å | 1.33Å | Aromatic |
C10 | C11 | sing | 1.48Å | 1.48Å | |
C12 | C11 | doub | 1.39Å | 1.39Å | Aromatic |
C12 | C13 | sing | 1.38Å | 1.38Å | Aromatic |
C11 | C16 | sing | 1.40Å | 1.40Å | Aromatic |
CL | C13 | sing | 1.74Å | 1.73Å | |
C13 | C14 | doub | 1.39Å | 1.38Å | Aromatic |
C16 | C15 | doub | 1.38Å | 1.39Å | Aromatic |
C14 | C15 | sing | 1.39Å | 1.38Å | Aromatic |
C14 | F | sing | 1.35Å | 1.36Å | |
N3 | H1 | sing | 0.97Å | 1.00Å | |
N3 | H2 | sing | 0.97Å | 1.00Å | |
C4 | H3 | sing | 1.08Å | 1.08Å | |
C6 | H4 | sing | 1.08Å | 1.08Å | |
C7 | H5 | sing | 1.08Å | 1.08Å | |
C15 | H6 | sing | 1.08Å | 1.08Å | |
C12 | H7 | sing | 1.08Å | 1.08Å | |
C16 | H8 | sing | 1.08Å | 1.08Å | |
C2 | H9 | sing | 1.08Å | 1.08Å | |
C3 | H10 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N3 | C9 | S | 120.8° | 124.6° |
N3 | C9 | N2 | 124.0° | 124.6° |
C9 | N3 | H1 | 109.5° | 120.0° |
C9 | N3 | H2 | 109.5° | 120.0° |
C9 | S | C8 | 88.6° | 90.6° |
S | C9 | N2 | 115.2° | 110.9° |
S | C8 | C5 | 118.2° | 126.1° |
S | C8 | C10 | 110.0° | 107.8° |
C9 | N2 | C10 | 111.1° | 117.1° |
C5 | C8 | C10 | 131.7° | 126.1° |
C8 | C5 | N1 | 112.2° | 119.3° |
C8 | C5 | C6 | 123.3° | 119.4° |
C8 | C10 | N2 | 115.1° | 113.6° |
C8 | C10 | C11 | 127.4° | 123.2° |
N2 | C10 | C11 | 117.5° | 123.2° |
N1 | C5 | C6 | 124.4° | 121.3° |
C5 | N1 | C1 | 117.9° | 121.1° |
C5 | C6 | C7 | 118.4° | 119.9° |
C5 | C6 | H4 | 120.8° | 120.0° |
N1 | C1 | C2 | 120.2° | 121.0° |
N1 | C1 | C | 120.8° | 120.3° |
C6 | C7 | C | 119.7° | 118.4° |
C7 | C6 | H4 | 120.8° | 120.1° |
C6 | C7 | H5 | 120.2° | 120.8° |
C2 | C1 | C | 119.0° | 118.7° |
C1 | C2 | C3 | 119.2° | 118.2° |
C1 | C2 | H9 | 120.4° | 120.8° |
C1 | C | C7 | 118.9° | 119.0° |
C1 | C | N | 121.0° | 120.1° |
C7 | C | N | 120.1° | 120.9° |
C | C7 | H5 | 120.2° | 120.8° |
C2 | C3 | C4 | 118.6° | 120.0° |
C3 | C2 | H9 | 120.4° | 120.9° |
C2 | C3 | H10 | 120.7° | 120.0° |
C | N | C4 | 117.7° | 121.3° |
C3 | C4 | N | 124.5° | 121.6° |
C3 | C4 | H3 | 117.8° | 119.2° |
C4 | C3 | H10 | 120.7° | 120.0° |
N | C4 | H3 | 117.8° | 119.1° |
C10 | C11 | C12 | 119.0° | 120.1° |
C10 | C11 | C16 | 121.8° | 120.1° |
C11 | C12 | C13 | 120.0° | 119.9° |
C12 | C11 | C16 | 119.1° | 119.8° |
C11 | C12 | H7 | 120.0° | 120.0° |
C12 | C13 | CL | 119.9° | 119.9° |
C12 | C13 | C14 | 119.9° | 120.1° |
C13 | C12 | H7 | 120.0° | 120.1° |
C11 | C16 | C15 | 120.7° | 119.9° |
C11 | C16 | H8 | 119.6° | 120.1° |
CL | C13 | C14 | 120.2° | 119.9° |
C13 | C14 | C15 | 121.4° | 120.2° |
C13 | C14 | F | 119.1° | 119.9° |
C16 | C15 | C14 | 118.9° | 120.1° |
C16 | C15 | H6 | 120.6° | 119.9° |
C15 | C16 | H8 | 119.6° | 120.0° |
C15 | C14 | F | 119.6° | 119.9° |
C14 | C15 | H6 | 120.6° | 119.9° |
H1 | N3 | H2 | 109.4° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N3 | C9 | S | N2 | 179.4° | 179.7° |
N3 | C9 | S | C8 | 178.8° | 179.9° |
N3 | C9 | N2 | C10 | 179.2° | 180.0° |
C9 | N3 | H1 | H2 | 120.0° | 180.0° |
C9 | S | C8 | C5 | 176.2° | 179.9° |
C9 | S | C8 | C10 | 0.8° | 0.3° |
S | C9 | N2 | C10 | 0.2° | 0.3° |
S | C9 | N3 | H1 | 0.0° | 179.7° |
S | C9 | N3 | H2 | 120.0° | 0.2° |
C8 | S | C9 | N2 | 0.6° | 0.4° |
S | C8 | C5 | C10 | 176.2° | 179.7° |
S | C8 | C10 | N2 | 0.8° | 0.2° |
S | C8 | C5 | N1 | 36.3° | 173.3° |
S | C8 | C5 | C6 | 141.0° | 6.7° |
S | C8 | C10 | C11 | 179.7° | 179.7° |
C9 | N2 | C10 | C8 | 0.4° | 0.0° |
C9 | N2 | C10 | C11 | 179.3° | 180.0° |
N2 | C9 | N3 | H1 | 179.4° | 0.0° |
N2 | C9 | N3 | H2 | 59.4° | 180.0° |
C5 | C8 | C10 | N2 | 175.6° | 180.0° |
C8 | C5 | N1 | C6 | 177.3° | 180.0° |
C8 | C5 | N1 | C1 | 177.0° | 180.0° |
C8 | C5 | C6 | C7 | 176.9° | 180.0° |
C5 | C8 | C10 | C11 | 3.2° | 0.1° |
C8 | C5 | C6 | H4 | 3.1° | 0.0° |
C8 | C10 | N2 | C11 | 178.9° | 179.9° |
C10 | C8 | C5 | N1 | 147.5° | 7.0° |
C10 | C8 | C5 | C6 | 35.2° | 173.0° |
C8 | C10 | C11 | C12 | 142.9° | 132.6° |
C8 | C10 | C11 | C16 | 40.9° | 47.3° |
N2 | C10 | C11 | C12 | 35.9° | 47.4° |
N2 | C10 | C11 | C16 | 140.3° | 132.6° |
N1 | C5 | C6 | C7 | 0.1° | 0.0° |
C5 | N1 | C1 | C2 | 179.9° | 180.0° |
C5 | N1 | C1 | C | 0.4° | 0.0° |
N1 | C5 | C6 | H4 | 179.9° | 180.0° |
C6 | C5 | N1 | C1 | 0.3° | 0.0° |
C5 | C6 | C7 | H4 | 180.0° | 180.0° |
C5 | C6 | C7 | C | 0.1° | 0.0° |
C5 | C6 | C7 | H5 | 179.9° | 180.0° |
N1 | C1 | C2 | C | 179.5° | 180.0° |
N1 | C1 | C | C7 | 0.4° | 0.0° |
N1 | C1 | C2 | C3 | 179.0° | 180.0° |
N1 | C1 | C | N | 178.9° | 179.9° |
N1 | C1 | C2 | H9 | 1.0° | 0.1° |
C6 | C7 | C | C1 | 0.2° | 0.0° |
C6 | C7 | C | H5 | 180.0° | 180.0° |
C6 | C7 | C | N | 179.1° | 179.9° |
C2 | C1 | C | C7 | 179.9° | 180.0° |
C1 | C2 | C3 | H9 | 180.0° | 180.0° |
C2 | C1 | C | N | 0.6° | 0.0° |
C1 | C2 | C3 | C4 | 0.2° | 0.0° |
C1 | C2 | C3 | H10 | 179.8° | 179.9° |
C1 | C | C7 | N | 179.3° | 179.9° |
C | C1 | C2 | C3 | 0.5° | 0.0° |
C1 | C | N | C4 | 0.1° | 0.0° |
C1 | C | C7 | H5 | 179.8° | 180.0° |
C | C1 | C2 | H9 | 179.5° | 180.0° |
C7 | C | N | C4 | 179.3° | 180.0° |
C | C7 | C6 | H4 | 179.9° | 180.0° |
C2 | C3 | C4 | H10 | 180.0° | 179.9° |
C2 | C3 | C4 | N | 0.8° | 0.0° |
C2 | C3 | C4 | H3 | 179.2° | 180.0° |
C | N | C4 | C3 | 0.6° | 0.0° |
C | N | C4 | H3 | 179.4° | 180.0° |
N | C | C7 | H5 | 0.9° | 0.0° |
C3 | C4 | N | H3 | 180.0° | 180.0° |
C4 | C3 | C2 | H9 | 179.8° | 180.0° |
N | C4 | C3 | H10 | 179.2° | 179.9° |
C10 | C11 | C12 | C16 | 176.3° | 180.0° |
C10 | C11 | C12 | C13 | 175.0° | 180.0° |
C10 | C11 | C16 | C15 | 175.3° | 179.7° |
C10 | C11 | C12 | H7 | 5.0° | 0.0° |
C10 | C11 | C16 | H8 | 4.7° | 0.3° |
C11 | C12 | C13 | H7 | 180.0° | 180.0° |
C11 | C12 | C13 | CL | 178.3° | 179.7° |
C11 | C12 | C13 | C14 | 0.9° | 0.0° |
C12 | C11 | C16 | C15 | 0.9° | 0.3° |
C12 | C11 | C16 | H8 | 179.1° | 179.8° |
C13 | C12 | C11 | C16 | 1.3° | 0.0° |
C12 | C13 | CL | C14 | 179.2° | 179.7° |
C12 | C13 | C14 | C15 | 0.0° | 0.3° |
C12 | C13 | C14 | F | 179.2° | 179.7° |
C11 | C16 | C15 | H8 | 180.0° | 180.0° |
C11 | C16 | C15 | C14 | 0.1° | 0.6° |
C11 | C16 | C15 | H6 | 179.9° | 180.0° |
C16 | C11 | C12 | H7 | 178.7° | 180.0° |
CL | C13 | C14 | C15 | 179.1° | 180.0° |
CL | C13 | C14 | F | 0.0° | 0.0° |
CL | C13 | C12 | H7 | 1.7° | 0.3° |
C13 | C14 | C15 | C16 | 0.3° | 0.6° |
C13 | C14 | C15 | F | 179.1° | 180.0° |
C13 | C14 | C15 | H6 | 179.6° | 180.0° |
C14 | C13 | C12 | H7 | 179.2° | 180.0° |
C16 | C15 | C14 | H6 | 180.0° | 179.5° |
C16 | C15 | C14 | F | 178.8° | 179.5° |
C14 | C15 | C16 | H8 | 179.9° | 179.5° |
F | C14 | C15 | H6 | 1.2° | 0.0° |
H3 | C4 | C3 | H10 | 0.8° | 0.1° |
H4 | C6 | C7 | H5 | 0.1° | 0.0° |
H6 | C15 | C16 | H8 | 0.1° | 0.0° |
H9 | C2 | C3 | H10 | 0.2° | 0.1° |