5FU

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
F5	C5	sing	1.35Å	1.34Å
C5	C6	doub	1.33Å	1.26Å
C5	C4	sing	1.47Å	1.38Å
C4	O4	doub	1.23Å	1.25Å
C4	N3	sing	1.39Å	1.38Å
N3	H3	sing	1.02Å	1.00Å
N3	C2	sing	1.40Å	1.38Å
C2	N1	sing	1.42Å	1.35Å
C2	O2	doub	1.23Å	1.25Å
C6	N1	sing	1.39Å	1.27Å
C6	H6	sing	1.08Å	1.08Å
N1	C1'	sing	1.43Å	1.45Å
C1'	C2'	sing	1.52Å	1.51Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	O4'	sing	1.44Å	1.43Å
O4'	C4'	sing	1.44Å	1.44Å
C2'	O2'	sing	1.41Å	1.43Å
C2'	H2'	sing	1.10Å	1.10Å
C2'	C3'	sing	1.51Å	1.52Å
O2'	HO'2	sing	0.97Å	0.95Å
C3'	C4'	sing	1.52Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.42Å
O3'	H3T	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
C4'	C5'	sing	1.52Å	1.51Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C5'	O5'	sing	1.42Å	1.42Å
O5'	P	sing	1.62Å	1.61Å
P	O1P	doub	1.50Å	1.51Å
P	O2P	sing	1.62Å	1.51Å
P	O3P	sing	1.62Å	132.87Å
O2P	HOP2	sing	0.98Å	0.95Å
O3P	HOP3	sing	0.98Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
F5	C5	C6	129.9°	122.5°
F5	C5	C4	125.4°	116.5°
C6	C5	C4	104.7°	121.0°
C5	C6	N1	149.3°	123.1°
C5	C6	H6	105.4°	121.0°
C5	C4	O4	120.4°	121.6°
C5	C4	N3	118.2°	113.6°
O4	C4	N3	121.4°	124.8°
C4	N3	H3	118.1°	116.6°
C4	N3	C2	123.8°	126.9°
H3	N3	C2	118.1°	116.5°
N3	C2	N1	117.9°	115.3°
N3	C2	O2	121.3°	121.0°
N1	C2	O2	120.8°	123.7°
C2	N1	C6	106.0°	120.1°
C2	N1	C1'	124.5°	121.3°
N1	C6	H6	105.3°	115.9°
C6	N1	C1'	129.5°	118.6°
N1	C1'	C2'	109.3°	112.5°
N1	C1'	H1'	109.0°	107.3°
N1	C1'	O4'	109.6°	109.0°
C2'	C1'	H1'	110.5°	112.6°
C2'	C1'	O4'	108.2°	106.5°
C1'	C2'	O2'	108.2°	112.6°
C1'	C2'	H2'	114.1°	111.1°
C1'	C2'	C3'	103.9°	102.0°
H1'	C1'	O4'	110.2°	108.9°
C1'	O4'	C4'	109.3°	109.2°
O4'	C4'	C3'	104.4°	105.9°
O4'	C4'	H4'	112.7°	107.7°
O4'	C4'	C5'	111.2°	108.2°
O2'	C2'	H2'	108.0°	108.6°
O2'	C2'	C3'	110.5°	112.3°
C2'	O2'	HO'2	109.5°	107.1°
H2'	C2'	C3'	112.0°	110.1°
C2'	C3'	C4'	104.4°	102.1°
C2'	C3'	H3'	112.2°	114.0°
C2'	C3'	O3'	110.5°	110.3°
C4'	C3'	H3'	113.0°	114.5°
C4'	C3'	O3'	109.7°	107.9°
C3'	C4'	H4'	111.6°	112.2°
C3'	C4'	C5'	112.3°	113.3°
H3'	C3'	O3'	107.1°	107.8°
C3'	O3'	H3T	109.5°	106.4°
H4'	C4'	C5'	104.9°	109.3°
C4'	C5'	H5'1	110.3°	110.1°
C4'	C5'	H5'2	110.8°	110.1°
C4'	C5'	O5'	107.1°	108.6°
H5'1	C5'	H5'2	107.6°	109.6°
H5'1	C5'	O5'	110.3°	109.2°
H5'2	C5'	O5'	110.8°	109.3°
C5'	O5'	P	121.7°	118.5°
O5'	P	O1P	108.7°	115.0°
O5'	P	O2P	108.9°	103.8°
O5'	P	O3P	153.2°	102.9°
O1P	P	O2P	120.6°	115.3°
O1P	P	O3P	77.5°	114.9°
O2P	P	O3P	50.0°	103.3°
P	O2P	HOP2	109.5°	119.0°
P	O3P	HOP3	90.0°	119.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
F5	C5	C6	C4	179.3°	180.0°
F5	C5	C4	O4	0.7°	0.0°
F5	C5	C4	N3	179.0°	180.0°
F5	C5	C6	N1	179.9°	179.9°
F5	C5	C6	H6	0.1°	0.0°
C6	C5	C4	O4	180.0°	180.0°
C6	C5	C4	N3	0.3°	0.0°
C5	C6	N1	C2	0.9°	0.0°
C5	C6	N1	H6	180.0°	179.9°
C5	C6	N1	C1'	179.9°	180.0°
C5	C4	O4	N3	179.7°	180.0°
C5	C4	N3	H3	179.3°	180.0°
C5	C4	N3	C2	0.7°	0.0°
C4	C5	C6	N1	0.6°	0.0°
C4	C5	C6	H6	179.4°	179.9°
O4	C4	N3	H3	0.4°	0.0°
O4	C4	N3	C2	179.6°	180.0°
C4	N3	H3	C2	180.0°	180.0°
C4	N3	C2	N1	0.4°	0.0°
C4	N3	C2	O2	179.1°	180.0°
H3	N3	C2	N1	179.6°	180.0°
H3	N3	C2	O2	0.9°	0.0°
N3	C2	N1	O2	179.5°	180.0°
N3	C2	N1	C6	0.3°	0.0°
N3	C2	N1	C1'	179.3°	180.0°
C2	N1	C6	C1'	179.0°	180.0°
C2	N1	C6	H6	179.1°	179.9°
C2	N1	C1'	C2'	91.8°	94.3°
C2	N1	C1'	H1'	29.1°	30.0°
C2	N1	C1'	O4'	149.8°	147.8°
O2	C2	N1	C6	179.7°	180.0°
O2	C2	N1	C1'	1.2°	0.0°
C6	N1	C1'	C2'	89.4°	85.7°
C6	N1	C1'	H1'	149.7°	150.0°
C6	N1	C1'	O4'	29.0°	32.2°
H6	C6	N1	C1'	0.1°	0.1°
N1	C1'	C2'	H1'	120.0°	121.4°
N1	C1'	C2'	O4'	119.3°	119.3°
N1	C1'	H1'	O4'	120.4°	117.8°
N1	C1'	O4'	C4'	132.3°	132.9°
N1	C1'	C2'	O2'	130.4°	89.4°
N1	C1'	C2'	H2'	10.1°	32.7°
N1	C1'	C2'	C3'	112.1°	150.0°
C2'	C1'	H1'	O4'	119.5°	117.9°
C2'	C1'	O4'	C4'	13.1°	11.3°
C1'	C2'	O2'	H2'	124.0°	123.5°
C1'	C2'	O2'	C3'	113.2°	114.5°
C1'	C2'	H2'	C3'	117.7°	112.3°
C1'	C2'	O2'	HO'2	5.3°	54.3°
C1'	C2'	C3'	C4'	23.4°	37.1°
C1'	C2'	C3'	H3'	99.3°	161.1°
C1'	C2'	C3'	O3'	141.3°	77.4°
H1'	C1'	O4'	C4'	107.7°	110.3°
H1'	C1'	C2'	O2'	10.4°	32.1°
H1'	C1'	C2'	H2'	109.8°	154.2°
H1'	C1'	C2'	C3'	127.9°	88.5°
O4'	C1'	C2'	O2'	110.2°	151.3°
O4'	C1'	C2'	H2'	129.5°	86.6°
O4'	C1'	C2'	C3'	7.2°	30.7°
C1'	O4'	C4'	C3'	27.9°	12.8°
C1'	O4'	C4'	H4'	93.4°	133.0°
C1'	O4'	C4'	C5'	149.2°	109.0°
O4'	C4'	C3'	C2'	31.6°	31.5°
O4'	C4'	C3'	H4'	122.0°	117.2°
O4'	C4'	C3'	C5'	120.5°	118.4°
O4'	C4'	C3'	H3'	90.6°	155.2°
O4'	C4'	C3'	O3'	149.9°	84.7°
O4'	C4'	H4'	C5'	121.1°	117.3°
O4'	C4'	C5'	H5'1	67.5°	57.1°
O4'	C4'	C5'	H5'2	173.5°	178.0°
O4'	C4'	C5'	O5'	52.5°	62.4°
O2'	C2'	H2'	C3'	121.9°	123.3°
O2'	C2'	C3'	C4'	92.5°	158.0°
O2'	C2'	C3'	H3'	144.8°	78.0°
O2'	C2'	C3'	O3'	25.4°	43.5°
H2'	C2'	O2'	HO'2	118.8°	69.2°
H2'	C2'	C3'	C4'	147.1°	80.9°
H2'	C2'	C3'	H3'	24.4°	43.1°
H2'	C2'	C3'	O3'	95.1°	164.6°
C3'	C2'	O2'	HO'2	118.4°	168.8°
C2'	C3'	C4'	H3'	122.2°	123.7°
C2'	C3'	C4'	O3'	118.4°	116.3°
C2'	C3'	H3'	O3'	121.4°	122.8°
C2'	C3'	O3'	H3T	26.8°	95.6°
C2'	C3'	C4'	H4'	90.4°	148.7°
C2'	C3'	C4'	C5'	152.1°	86.9°
C4'	C3'	H3'	O3'	120.9°	120.1°
C4'	C3'	O3'	H3T	87.8°	15.2°
C3'	C4'	H4'	C5'	121.8°	126.5°
C3'	C4'	C5'	H5'1	176.0°	60.0°
C3'	C4'	C5'	H5'2	56.9°	60.9°
C3'	C4'	C5'	O5'	64.0°	179.5°
H3'	C3'	O3'	H3T	149.2°	139.4°
H3'	C3'	C4'	H4'	147.4°	87.6°
H3'	C3'	C4'	C5'	29.9°	36.8°
O3'	C3'	C4'	H4'	27.9°	32.5°
O3'	C3'	C4'	C5'	89.5°	156.8°
H4'	C4'	C5'	H5'1	54.6°	174.1°
H4'	C4'	C5'	H5'2	64.5°	65.0°
H4'	C4'	C5'	O5'	174.6°	54.6°
C4'	C5'	H5'1	H5'2	121.0°	121.2°
C4'	C5'	H5'1	O5'	118.0°	119.2°
C4'	C5'	H5'2	O5'	118.7°	119.2°
C4'	C5'	O5'	P	179.5°	180.0°
H5'1	C5'	H5'2	O5'	120.7°	119.6°
H5'1	C5'	O5'	P	60.5°	59.9°
H5'2	C5'	O5'	P	58.6°	59.9°
C5'	O5'	P	O1P	157.6°	179.9°
C5'	O5'	P	O2P	24.5°	53.2°
C5'	O5'	P	O3P	58.3°	54.2°
O5'	P	O1P	O2P	126.7°	120.7°
O5'	P	O1P	O3P	152.9°	119.3°
O5'	P	O2P	O3P	160.9°	107.1°
O5'	P	O2P	HOP2	51.2°	175.4°
O5'	P	O3P	HOP3	90.0°	173.8°
O1P	P	O2P	O3P	34.3°	126.2°
O1P	P	O2P	HOP2	177.8°	48.7°
O1P	P	O3P	HOP3	90.0°	48.0°
O2P	P	O3P	HOP3	90.0°	78.5°
O3P	P	O2P	HOP2	147.9°	77.5°

Definition date:	2007-02-02
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB