5FC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP2 | sing | 1.62Å | 1.48Å | |
P | OP1 | doub | 1.50Å | 1.49Å | |
P | O5' | sing | 1.62Å | 1.59Å | |
P | OP3 | sing | 1.62Å | 8.27Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.42Å | |
N1 | C6 | sing | 1.39Å | 1.36Å | |
N1 | C2 | sing | 1.41Å | 1.38Å | |
N1 | C1' | sing | 1.43Å | 1.47Å | |
C6 | C5 | doub | 1.33Å | 1.33Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C2 | O2 | doub | 1.23Å | 1.24Å | |
C2 | N3 | sing | 1.38Å | 1.36Å | |
N3 | C4 | doub | 1.31Å | 1.35Å | |
C4 | N4 | sing | 1.38Å | 1.34Å | |
C4 | C5 | sing | 1.49Å | 1.44Å | |
N4 | HN41 | sing | 0.99Å | 1.02Å | |
N4 | HN42 | sing | 0.99Å | 1.02Å | |
C5 | C5A | sing | 1.46Å | 1.50Å | |
C2' | C1' | sing | 1.52Å | 1.52Å | |
C2' | C3' | sing | 1.51Å | 1.53Å | |
C2' | H2' | sing | 1.10Å | 1.11Å | |
C2' | H2'' | sing | 1.09Å | 1.12Å | |
C5' | C4' | sing | 1.52Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.52Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.43Å | 1.41Å | |
C1' | H1' | sing | 1.10Å | 1.12Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C5A | O5A | doub | 1.23Å | 1.23Å | |
C5A | H5A | sing | 1.10Å | 1.10Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP2 | P | OP1 | 119.7° | 115.3° |
OP2 | P | O5' | 108.0° | 103.7° |
OP2 | P | OP3 | 141.3° | 103.3° |
P | OP2 | HOP2 | 119.7° | 118.9° |
OP1 | P | O5' | 108.1° | 115.0° |
OP1 | P | OP3 | 82.2° | 115.0° |
O5' | P | OP3 | 33.7° | 102.9° |
P | O5' | C5' | 120.3° | 118.5° |
P | OP3 | HOP3 | 141.3° | 118.9° |
O5' | C5' | C4' | 109.7° | 108.9° |
O5' | C5' | H5' | 112.1° | 109.0° |
O5' | C5' | H5'' | 112.1° | 108.9° |
C6 | N1 | C2 | 119.5° | 119.5° |
C6 | N1 | C1' | 121.4° | 120.2° |
N1 | C6 | C5 | 121.8° | 122.7° |
N1 | C6 | H6 | 120.2° | 115.1° |
C2 | N1 | C1' | 119.0° | 120.3° |
N1 | C2 | O2 | 118.8° | 121.0° |
N1 | C2 | N3 | 119.5° | 118.7° |
N1 | C1' | C2' | 116.4° | 112.8° |
N1 | C1' | O4' | 106.9° | 109.3° |
N1 | C1' | H1' | 105.3° | 107.8° |
C5 | C6 | H6 | 118.0° | 122.2° |
C6 | C5 | C4 | 119.7° | 116.3° |
C6 | C5 | C5A | 121.8° | 117.8° |
O2 | C2 | N3 | 121.7° | 120.2° |
C2 | N3 | C4 | 122.1° | 121.4° |
N3 | C4 | N4 | 117.1° | 118.7° |
N3 | C4 | C5 | 117.2° | 121.3° |
N4 | C4 | C5 | 125.3° | 120.0° |
C4 | N4 | HN41 | 117.1° | 118.0° |
C4 | N4 | HN42 | 109.4° | 118.0° |
C4 | C5 | C5A | 118.2° | 125.9° |
HN41 | N4 | HN42 | 109.5° | 124.0° |
C5 | C5A | O5A | 121.3° | 122.6° |
C5 | C5A | H5A | 129.2° | 115.2° |
C1' | C2' | C3' | 103.5° | 102.5° |
C1' | C2' | H2' | 114.5° | 110.6° |
C1' | C2' | H2'' | 114.5° | 111.7° |
C2' | C1' | O4' | 105.3° | 107.4° |
C2' | C1' | H1' | 107.0° | 111.5° |
C3' | C2' | H2' | 114.5° | 109.7° |
C3' | C2' | H2'' | 114.5° | 114.1° |
C2' | C3' | C4' | 104.8° | 103.1° |
C2' | C3' | O3' | 112.6° | 109.7° |
C2' | C3' | H3' | 110.1° | 113.2° |
H2' | C2' | H2'' | 96.0° | 108.3° |
C4' | C5' | H5' | 112.1° | 110.3° |
C4' | C5' | H5'' | 112.1° | 110.3° |
C5' | C4' | O4' | 109.6° | 107.9° |
C5' | C4' | C3' | 113.8° | 112.9° |
C5' | C4' | H4' | 105.5° | 109.5° |
H5' | C5' | H5'' | 98.3° | 109.3° |
O4' | C4' | C3' | 106.5° | 106.2° |
O4' | C4' | H4' | 112.9° | 107.9° |
C4' | O4' | C1' | 110.2° | 109.3° |
C3' | C4' | H4' | 108.6° | 112.2° |
C4' | C3' | O3' | 108.2° | 109.9° |
C4' | C3' | H3' | 114.4° | 113.5° |
O4' | C1' | H1' | 116.5° | 108.0° |
O3' | C3' | H3' | 106.8° | 107.4° |
C3' | O3' | HO3' | 112.6° | 107.3° |
O5A | C5A | H5A | 109.5° | 122.2° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | OP1 | O5' | 124.1° | 120.6° |
OP2 | P | OP1 | OP3 | 146.0° | 120.1° |
OP2 | P | O5' | OP3 | 172.7° | 107.4° |
OP2 | P | O5' | C5' | 58.0° | 53.2° |
OP2 | P | OP3 | HOP3 | 180.0° | 78.5° |
OP1 | P | O5' | OP3 | 41.8° | 125.8° |
OP1 | P | OP2 | HOP2 | 180.0° | 48.8° |
OP1 | P | O5' | C5' | 171.1° | 179.9° |
OP1 | P | OP3 | HOP3 | 51.0° | 48.0° |
O5' | P | OP2 | HOP2 | 55.9° | 175.4° |
P | O5' | C5' | C4' | 178.0° | 180.0° |
P | O5' | C5' | H5' | 52.8° | 59.6° |
P | O5' | C5' | H5'' | 56.8° | 59.6° |
O5' | P | OP3 | HOP3 | 168.8° | 173.8° |
OP3 | P | OP2 | HOP2 | 62.4° | 77.5° |
OP3 | P | O5' | C5' | 129.3° | 54.2° |
O5' | C5' | C4' | H5' | 125.3° | 119.6° |
O5' | C5' | C4' | H5'' | 125.3° | 119.5° |
O5' | C5' | H5' | H5'' | 118.1° | 119.0° |
O5' | C5' | C4' | O4' | 68.9° | 62.4° |
O5' | C5' | C4' | C3' | 50.2° | 179.5° |
O5' | C5' | C4' | H4' | 169.2° | 54.7° |
C6 | N1 | C2 | C1' | 178.0° | 180.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C2 | O2 | 176.8° | 179.9° |
C6 | N1 | C2 | N3 | 3.1° | 0.0° |
N1 | C6 | C5 | C4 | 0.5° | 0.0° |
N1 | C6 | C5 | C5A | 174.2° | 180.0° |
C6 | N1 | C1' | C2' | 57.7° | 86.5° |
C6 | N1 | C1' | O4' | 59.6° | 32.9° |
C6 | N1 | C1' | H1' | 175.9° | 150.0° |
C2 | N1 | C6 | C5 | 3.2° | 0.0° |
C2 | N1 | C6 | H6 | 176.8° | 180.0° |
N1 | C2 | O2 | N3 | 179.8° | 179.9° |
N1 | C2 | N3 | C4 | 0.2° | 0.0° |
C2 | N1 | C1' | C2' | 124.4° | 93.5° |
C2 | N1 | C1' | O4' | 118.3° | 147.1° |
C2 | N1 | C1' | H1' | 6.2° | 30.0° |
C1' | N1 | C6 | C5 | 174.7° | 180.0° |
C1' | N1 | C6 | H6 | 5.3° | 0.0° |
C1' | N1 | C2 | O2 | 5.3° | 0.1° |
C1' | N1 | C2 | N3 | 174.9° | 180.0° |
N1 | C1' | C2' | O4' | 118.2° | 120.5° |
N1 | C1' | C2' | H1' | 117.3° | 121.4° |
N1 | C1' | C2' | C3' | 149.5° | 147.4° |
N1 | C1' | C2' | H2' | 85.2° | 30.6° |
N1 | C1' | C2' | H2'' | 24.2° | 90.1° |
N1 | C1' | O4' | C4' | 152.8° | 131.7° |
N1 | C1' | O4' | H1' | 117.3° | 117.0° |
C6 | C5 | C4 | N3 | 2.3° | 0.0° |
C6 | C5 | C4 | N4 | 170.3° | 180.0° |
C6 | C5 | C4 | C5A | 173.9° | 180.0° |
C6 | C5 | C5A | O5A | 179.7° | 180.0° |
C6 | C5 | C5A | H5A | 0.3° | 0.0° |
H6 | C6 | C5 | C4 | 179.5° | 180.0° |
H6 | C6 | C5 | C5A | 5.8° | 0.0° |
O2 | C2 | N3 | C4 | 179.6° | 179.9° |
C2 | N3 | C4 | N4 | 170.8° | 180.0° |
C2 | N3 | C4 | C5 | 2.4° | 0.0° |
N3 | C4 | N4 | C5 | 172.6° | 180.0° |
N3 | C4 | N4 | HN41 | 180.0° | 47.9° |
N3 | C4 | N4 | HN42 | 54.7° | 132.1° |
N3 | C4 | C5 | C5A | 171.6° | 180.0° |
C4 | N4 | HN41 | HN42 | 125.3° | 180.0° |
N4 | C4 | C5 | C5A | 15.9° | 0.0° |
C5 | C4 | N4 | HN41 | 7.4° | 132.1° |
C5 | C4 | N4 | HN42 | 117.9° | 47.9° |
C4 | C5 | C5A | O5A | 6.5° | 0.0° |
C4 | C5 | C5A | H5A | 173.4° | 180.0° |
C5 | C5A | O5A | H5A | 180.0° | 179.9° |
C1' | C2' | C3' | H2' | 125.3° | 117.5° |
C1' | C2' | C3' | H2'' | 125.2° | 120.8° |
C1' | C2' | H2' | H2'' | 120.3° | 122.7° |
C2' | C1' | O4' | C4' | 28.4° | 9.0° |
C1' | C2' | C3' | C4' | 22.8° | 33.4° |
C2' | C1' | O4' | H1' | 118.3° | 120.3° |
C1' | C2' | C3' | O3' | 94.6° | 83.6° |
C1' | C2' | C3' | H3' | 146.3° | 156.4° |
C3' | C2' | H2' | H2'' | 120.4° | 125.1° |
C2' | C3' | C4' | C5' | 114.0° | 88.8° |
C2' | C3' | C4' | O4' | 6.9° | 29.2° |
C2' | C3' | C4' | O3' | 120.4° | 116.9° |
C2' | C3' | C4' | H3' | 120.7° | 122.8° |
C2' | C3' | C4' | H4' | 128.8° | 146.9° |
C3' | C2' | C1' | O4' | 31.3° | 26.9° |
C3' | C2' | C1' | H1' | 93.2° | 91.2° |
C2' | C3' | O3' | H3' | 121.0° | 123.4° |
C2' | C3' | O3' | HO3' | 180.0° | 118.1° |
H2' | C2' | C3' | C4' | 148.1° | 84.1° |
H2' | C2' | C1' | O4' | 156.6° | 90.0° |
H2' | C2' | C1' | H1' | 32.1° | 151.9° |
H2' | C2' | C3' | O3' | 30.7° | 158.9° |
H2' | C2' | C3' | H3' | 88.4° | 38.9° |
H2'' | C2' | C3' | C4' | 102.4° | 154.3° |
H2'' | C2' | C1' | O4' | 94.0° | 149.4° |
H2'' | C2' | C1' | H1' | 141.5° | 31.3° |
H2'' | C2' | C3' | O3' | 140.2° | 37.2° |
H2'' | C2' | C3' | H3' | 21.1° | 82.7° |
C4' | C5' | H5' | H5'' | 118.0° | 121.5° |
C5' | C4' | O4' | C3' | 123.6° | 121.4° |
C5' | C4' | O4' | H4' | 117.3° | 118.2° |
C5' | C4' | C3' | H4' | 117.2° | 124.3° |
C5' | C4' | O4' | C1' | 137.1° | 108.6° |
C5' | C4' | C3' | O3' | 125.6° | 154.2° |
C5' | C4' | C3' | H3' | 6.7° | 34.0° |
H5' | C5' | C4' | O4' | 165.8° | 57.1° |
H5' | C5' | C4' | C3' | 75.1° | 60.0° |
H5' | C5' | C4' | H4' | 43.9° | 174.3° |
H5'' | C5' | C4' | O4' | 56.3° | 178.1° |
H5'' | C5' | C4' | C3' | 175.5° | 61.0° |
H5'' | C5' | C4' | H4' | 65.5° | 64.8° |
O4' | C4' | C3' | H4' | 121.9° | 117.6° |
C4' | O4' | C1' | H1' | 89.9° | 111.3° |
O4' | C4' | C3' | O3' | 113.5° | 87.7° |
O4' | C4' | C3' | H3' | 127.6° | 152.1° |
C3' | C4' | O4' | C1' | 13.5° | 12.7° |
C4' | C3' | O3' | H3' | 123.6° | 123.9° |
C4' | C3' | O3' | HO3' | 64.6° | 129.2° |
H4' | C4' | O4' | C1' | 105.7° | 133.2° |
H4' | C4' | C3' | O3' | 8.4° | 29.9° |
H4' | C4' | C3' | H3' | 110.5° | 90.3° |
H3' | C3' | O3' | HO3' | 59.1° | 5.3° |