Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

5EK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C20C21doub1.34Å1.33ÅAromatic
C20C17sing1.47Å1.50ÅAromatic
C21N22sing1.37Å1.32ÅAromatic
C18C17doub1.40Å1.39ÅAromatic
C18C19sing1.37Å1.40ÅAromatic
C17C16sing1.41Å1.39ÅAromatic
CL6C31sing1.74Å1.72Å
N22C16sing1.38Å1.36ÅAromatic
N22C23sing1.40Å1.37Å
C19C14doub1.39Å1.41ÅAromatic
C16C15doub1.39Å1.42ÅAromatic
C31C23doub1.39Å1.41ÅAromatic
C31C32sing1.38Å1.39ÅAromatic
C23C35sing1.39Å1.41ÅAromatic
C14C15sing1.38Å1.40ÅAromatic
C14N13sing1.40Å1.42Å
C32C33doub1.38Å1.38ÅAromatic
C35C34doub1.38Å1.39ÅAromatic
N13C11sing1.35Å1.36Å
C33C34sing1.38Å1.41ÅAromatic
C11O12doub1.22Å1.23Å
C11N10sing1.35Å1.35Å
CL3C29sing1.74Å1.75Å
N10N9sing1.40Å1.45Å
C3N4sing1.47Å1.45Å
C3C2sing1.51Å1.50Å
C29C28doub1.38Å1.41ÅAromatic
C29C24sing1.40Å1.43ÅAromatic
C28C27sing1.38Å1.41ÅAromatic
N9C2sing1.35Å1.33Å
N4N5sing1.41Å1.36ÅAromatic
N4C8sing1.36Å1.32ÅAromatic
N5N6doub1.29Å1.35ÅAromatic
C2O1doub1.21Å1.23Å
C8C24sing1.48Å1.52Å
C8N7doub1.32Å1.28ÅAromatic
C24C25doub1.39Å1.41ÅAromatic
N6N7sing1.28Å1.43ÅAromatic
C27C26doub1.38Å1.41ÅAromatic
C25C26sing1.38Å1.41ÅAromatic
C3H1sing1.09Å1.10Å
C3H2sing1.09Å1.10Å
C15H3sing1.08Å1.08Å
C18H4sing1.08Å1.08Å
C19H5sing1.08Å1.08Å
C20H6sing1.08Å1.08Å
C21H7sing1.08Å1.08Å
C25H8sing1.08Å1.08Å
C26H9sing1.08Å1.08Å
C27H10sing1.08Å1.08Å
C28H11sing1.08Å1.08Å
N9H12sing0.97Å1.00Å
N10H13sing0.97Å1.00Å
N13H14sing0.97Å1.00Å
C32H15sing1.08Å1.08Å
C33H16sing1.08Å1.08Å
C34H17sing1.08Å1.08Å
C35H18sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C21C20C17106.2°107.0°
C20C21N22110.7°110.0°
C21C20H6126.9°126.5°
C20C21H7124.7°125.0°
C20C17C18133.1°133.8°
C20C17C16103.9°106.1°
C17C20H6126.9°126.5°
C21N22C16110.9°109.8°
C21N22C23121.8°125.1°
N22C21H7124.7°125.0°
C17C18C19116.0°119.8°
C18C17C16123.0°120.0°
C17C18H4122.0°120.1°
C18C19C14122.4°120.5°
C19C18H4122.0°120.0°
C18C19H5118.8°119.8°
C17C16N22108.3°107.1°
C17C16C15121.1°119.5°
CL6C31C23122.5°120.1°
CL6C31C32113.8°120.1°
C16N22C23126.9°125.1°
N22C16C15130.6°133.4°
N22C23C31126.5°120.1°
N22C23C35115.1°120.1°
C19C14C15121.0°120.5°
C19C14N13115.0°119.7°
C14C19H5118.8°119.7°
C16C15C14116.5°119.7°
C16C15H3121.7°120.2°
C23C31C32123.7°119.9°
C31C23C35118.3°119.8°
C31C32C33116.5°120.1°
C31C32H15121.7°119.9°
C23C35C34118.4°120.0°
C23C35H18120.8°120.0°
C15C14N13124.0°119.8°
C14C15H3121.7°120.1°
C14N13C11126.4°120.0°
C14N13H14116.8°119.9°
C32C33C34121.5°120.2°
C33C32H15121.7°120.0°
C32C33H16119.3°120.0°
C35C34C33121.5°120.1°
C35C34H17119.3°120.0°
C34C35H18120.8°120.0°
N13C11O12122.4°120.0°
N13C11N10120.0°120.0°
C11N13H14116.9°120.0°
C34C33H16119.2°119.9°
C33C34H17119.3°120.0°
O12C11N10117.6°120.0°
C11N10N9122.8°120.0°
C11N10H13118.6°120.0°
CL3C29C28115.6°120.1°
CL3C29C24123.2°120.1°
N10N9C2123.7°120.0°
N10N9H12118.2°120.0°
N9N10H13118.6°120.0°
N4C3C2110.7°109.4°
C3N4N5123.4°127.4°
C3N4C8129.1°127.4°
N4C3H1109.2°109.4°
N4C3H2109.2°109.4°
C3C2N9118.7°120.0°
C3C2O1122.3°120.0°
C2C3H1109.2°109.5°
C2C3H2109.2°109.5°
C28C29C24121.2°119.8°
C29C28C27119.6°120.2°
C29C28H11120.2°119.9°
C29C24C8126.4°120.1°
C29C24C25117.8°119.7°
C28C27C26120.1°120.3°
C28C27H10120.0°119.9°
C27C28H11120.2°120.0°
N9C2O1119.0°120.0°
C2N9H12118.1°120.0°
N5N4C8107.2°105.2°
N4N5N6106.7°106.8°
N4C8C24125.8°126.5°
N4C8N7114.0°107.0°
N5N6N7107.9°110.4°
C24C8N7119.5°126.5°
C8C24C25115.7°120.2°
C8N7N6104.0°110.5°
C24C25C26121.1°119.9°
C24C25H8119.5°120.1°
C27C26C25120.1°120.2°
C27C26H9120.0°119.9°
C26C27H10119.9°119.8°
C26C25H8119.4°120.0°
C25C26H9119.9°119.9°
H1C3H2109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C21C20C17H6180.0°179.9°
C20C21N22H7180.0°180.0°
C21C20C17C18178.6°180.0°
C21C20C17C160.2°0.0°
C20C21N22C161.7°0.0°
C20C21N22C23175.8°180.0°
C17C20C21N221.1°0.0°
C20C17C18C16178.1°180.0°
C20C17C18C19179.5°179.8°
C20C17C16N220.7°0.0°
C20C17C16C15179.3°180.0°
C20C17C18H40.5°0.0°
C17C20C21H7178.8°180.0°
C21N22C16C171.5°0.0°
C21N22C16C23173.7°180.0°
C21N22C16C15179.9°180.0°
C21N22C23C31120.1°114.7°
C21N22C23C3562.7°65.0°
N22C21C20H6178.8°179.9°
C17C18C19H4180.0°179.8°
C18C17C16N22177.9°180.0°
C17C18C19C141.9°0.5°
C18C17C16C150.7°0.0°
C17C18C19H5178.1°180.0°
C18C17C20H61.3°0.1°
C19C18C17C161.3°0.2°
C18C19C14H5180.0°179.5°
C18C19C14C152.0°0.6°
C18C19C14N13179.0°179.8°
C17C16N22C15178.4°180.0°
C17C16N22C23175.2°180.0°
C17C16C15C140.6°0.1°
C17C16C15H3179.4°180.0°
C16C17C18H4178.7°180.0°
C16C17C20H6179.7°179.9°
CL6C31C23N222.3°0.3°
CL6C31C23C32178.3°179.9°
CL6C31C23C35179.4°180.0°
CL6C31C32C33179.7°180.0°
CL6C31C32H150.3°0.1°
C16N22C23C3166.8°65.2°
C16N22C23C35110.3°115.0°
N22C16C15C14177.6°179.9°
N22C16C15H32.4°0.0°
C16N22C21H7178.3°180.0°
C23N22C16C156.4°0.0°
N22C23C31C35177.1°179.7°
N22C23C31C32179.4°179.8°
N22C23C35C34179.3°179.7°
C23N22C21H74.2°0.0°
N22C23C35H180.7°0.0°
C19C14C15C161.2°0.4°
C19C14C15N13176.8°179.6°
C19C14N13C11138.8°36.3°
C19C14C15H3178.8°179.7°
C14C19C18H4178.1°179.7°
C19C14N13H1441.2°143.7°
C16C15C14H3180.0°179.9°
C16C15C14N13178.0°180.0°
C23C31C32C331.9°0.1°
C31C23C35C341.9°0.0°
C23C31C32H15178.2°180.0°
C31C23C35H18178.2°179.7°
C32C31C23C352.3°0.0°
C31C32C33H15180.0°179.9°
C31C32C33C341.0°0.1°
C31C32C33H16179.1°180.0°
C23C35C34H18180.0°179.7°
C23C35C34C331.1°0.0°
C23C35C34H17178.9°180.0°
C15C14N13C1138.2°144.1°
C15C14C19H5178.0°179.9°
C15C14N13H14141.8°35.9°
C14N13C11H14180.0°180.0°
C14N13C11O125.6°4.6°
C14N13C11N10176.0°175.4°
N13C14C15H32.0°0.1°
N13C14C19H51.0°0.3°
C32C33C34C350.7°0.1°
C32C33C34H16180.0°179.9°
C32C33C34H17179.3°179.9°
C35C34C33H17180.0°180.0°
C35C34C33H16179.4°180.0°
N13C11O12N10178.4°180.0°
N13C11N10N9176.5°0.0°
N13C11N10H133.5°180.0°
C34C33C32H15179.0°180.0°
C33C34C35H18178.9°179.7°
O12C11N10N95.1°180.0°
O12C11N10H13174.9°0.0°
O12C11N13H14174.4°175.4°
C11N10N9H13180.0°180.0°
C11N10N9C293.7°180.0°
C11N10N9H1286.4°0.0°
N10C11N13H144.0°4.6°
CL3C29C28C24179.2°180.0°
CL3C29C28C27179.9°180.0°
CL3C29C24C82.4°0.3°
CL3C29C24C25179.9°180.0°
CL3C29C28H110.1°0.0°
N10N9C2C32.2°179.7°
N10N9C2H12180.0°180.0°
N10N9C2O1178.9°0.0°
N4C3C2H1120.2°120.0°
N4C3C2H2120.2°119.9°
N4C3C2N9167.0°179.7°
C3N4N5C8175.0°179.7°
C3N4N5N6177.1°180.0°
N4C3C2O114.3°0.0°
C3N4C8C2411.2°0.0°
C3N4C8N7178.4°179.9°
N4C3H1H2119.4°119.9°
C3C2N9O1178.8°179.8°
C2C3N4N5112.1°85.0°
C2C3N4C874.1°95.4°
C2C3H1H2119.5°120.1°
C3C2N9H12177.7°0.2°
C29C28C27H11180.0°180.0°
C28C29C24C8178.5°179.7°
C28C29C24C251.0°0.0°
C29C28C27C260.7°0.0°
C29C28C27H10179.3°180.0°
C24C29C28C270.9°0.0°
C29C24C8N472.0°131.1°
C29C24C8C25177.6°179.7°
C29C24C8N7118.0°48.7°
C29C24C25C260.8°0.0°
C29C24C25H8179.2°180.0°
C24C29C28H11179.1°180.0°
C28C27C26H10180.0°180.0°
C28C27C26C250.6°0.0°
C28C27C26H9179.4°180.0°
N9C2C3H172.9°60.3°
N9C2C3H246.8°59.8°
C2N9N10H1386.3°0.0°
N5N4C8C24174.2°179.7°
N5N4C8N73.7°0.4°
N4N5N6N70.0°0.0°
N5N4C3H18.1°35.0°
N5N4C3H2127.7°155.0°
C8N4N5N62.1°0.2°
N4C8C24N7170.0°179.9°
N4C8C24C25105.6°48.6°
N4C8N7N63.6°0.4°
C8N4C3H1165.8°144.6°
C8N4C3H246.1°24.6°
N5N6N7C82.1°0.3°
O1C2C3H1105.9°119.9°
O1C2C3H2134.4°120.0°
O1C2N9H121.1°180.0°
C24C8N7N6174.7°179.7°
C8C24C25C26178.6°179.7°
C8C24C25H81.4°0.3°
N7C8C24C2564.4°131.6°
C24C25C26C270.6°0.0°
C24C25C26H8180.0°180.0°
C24C25C26H9179.4°180.0°
C27C26C25H9180.0°179.9°
C27C26C25H8179.4°180.0°
C26C27C28H11179.3°180.0°
C25C26C27H10179.4°179.9°
H4C18C19H51.9°0.2°
H6C20C21H71.2°0.1°
H8C25C26H90.6°0.0°
H9C26C27H100.6°0.0°
H10C27C28H110.7°0.0°
H12N9N10H1393.7°180.0°
H15C32C33H160.9°0.1°
H16C33C34H170.6°0.0°
H17C34C35H181.1°0.3°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon