Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

5EF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C28C29doub1.38Å1.42ÅAromatic
C28C27sing1.38Å1.42ÅAromatic
C29C23sing1.39Å1.41ÅAromatic
C27C26doub1.38Å1.36ÅAromatic
C23C24sing1.51Å1.46Å
C23C22doub1.38Å1.40ÅAromatic
O19C18sing1.43Å1.40Å
C24C25sing1.54Å1.51Å
C26C22sing1.38Å1.42ÅAromatic
C18C17sing1.53Å1.52Å
C22C21sing1.51Å1.46Å
C25C21sing1.54Å1.54Å
C17S14sing1.81Å1.82Å
C21N20sing1.47Å1.42Å
O15S14doub1.42Å1.50Å
S14C8sing1.76Å1.77Å
S14O16doub1.42Å1.46Å
N20C9sing1.40Å1.36Å
C9C8doub1.39Å1.44ÅAromatic
C9C10sing1.39Å1.43ÅAromatic
C8C7sing1.38Å1.42ÅAromatic
C7F12sing1.35Å1.36Å
C7C6doub1.39Å1.38ÅAromatic
F13C10sing1.35Å1.30Å
C10C5doub1.38Å1.40ÅAromatic
C6C5sing1.38Å1.40ÅAromatic
C6F11sing1.35Å1.35Å
C5S1sing1.76Å1.81Å
N4S1sing1.66Å1.57Å
S1O3doub1.42Å1.55Å
S1O2doub1.42Å1.46Å
O19H1sing0.97Å0.95Å
C17H2sing1.09Å1.10Å
C17H3sing1.09Å1.10Å
C18H4sing1.09Å1.10Å
C18H5sing1.09Å1.10Å
N4H6sing0.97Å1.00Å
N4H7sing0.97Å1.00Å
N20H8sing1.01Å1.00Å
C21H9sing1.09Å1.10Å
C25H10sing1.09Å1.10Å
C25H11sing1.09Å1.10Å
C24H12sing1.09Å1.10Å
C24H13sing1.09Å1.10Å
C29H14sing1.08Å1.08Å
C28H15sing1.08Å1.08Å
C27H16sing1.08Å1.08Å
C26H17sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C29C28C27125.2°119.9°
C28C29C23116.2°120.3°
C28C29H14121.9°119.9°
C29C28H15117.4°120.1°
C28C27C26117.9°119.9°
C27C28H15117.4°120.1°
C28C27H16121.0°120.0°
C29C23C24127.7°130.4°
C29C23C22117.7°119.8°
C23C29H14121.9°119.8°
C27C26C22118.2°120.3°
C26C27H16121.0°120.1°
C27C26H17120.9°119.9°
C24C23C22114.5°109.8°
C23C24C2599.8°105.2°
C23C24H12111.9°110.3°
C23C24H13111.9°110.4°
C23C22C26124.7°119.8°
C23C22C21105.7°109.7°
O19C18C17110.3°109.5°
C18O19H1109.5°113.9°
O19C18H4109.2°109.5°
O19C18H5109.3°109.6°
C24C25C21104.3°102.4°
C24C25H10110.7°110.8°
C24C25H11110.7°111.0°
C25C24H12111.9°110.3°
C25C24H13111.8°110.2°
C26C22C21129.5°130.6°
C22C26H17120.9°119.8°
C18C17S14110.2°109.5°
C18C17H2109.3°109.5°
C18C17H3109.3°109.4°
C17C18H4109.3°109.4°
C17C18H5109.3°109.5°
C22C21C25104.5°105.2°
C22C21N20119.8°110.3°
C22C21H9103.8°110.3°
C25C21N20119.1°110.3°
C25C21H9103.1°110.3°
C21C25H10110.8°110.9°
C21C25H11110.7°110.8°
C17S14O15102.0°110.6°
C17S14C8120.1°104.5°
C17S14O16100.9°110.5°
S14C17H2109.3°109.5°
S14C17H3109.3°109.5°
C21N20C9123.1°111.0°
C21N20H8106.0°111.0°
N20C21H9104.2°110.3°
O15S14C8107.7°104.3°
O15S14O16114.5°121.0°
C8S14O16111.6°104.3°
S14C8C9125.8°120.0°
S14C8C7118.1°120.1°
N20C9C8125.2°120.0°
N20C9C10117.6°120.1°
C9N20H8105.9°110.9°
C8C9C10116.6°119.9°
C9C8C7116.0°120.0°
C9C10F13114.6°120.0°
C9C10C5128.4°120.0°
C8C7F12117.6°120.0°
C8C7C6122.7°120.1°
F12C7C6119.5°120.0°
C7C6C5124.9°120.1°
C7C6F11117.7°120.0°
F13C10C5116.9°120.0°
C10C5C6111.2°120.0°
C10C5S1129.0°120.0°
C5C6F11117.2°119.9°
C6C5S1119.6°120.0°
C5S1N4112.2°107.2°
C5S1O3116.7°106.4°
C5S1O2108.2°106.4°
N4S1O3105.2°106.4°
N4S1O2111.7°106.4°
S1N4H6109.5°119.9°
S1N4H7109.5°120.0°
O3S1O2102.5°123.2°
H2C17H3109.5°109.5°
H4C18H5109.5°109.4°
H6N4H7109.5°120.0°
H10C25H11109.5°110.7°
H12C24H13109.5°110.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C29C28C27H15180.0°180.0°
C28C29C23H14180.0°179.9°
C29C28C27C260.1°0.0°
C28C29C23C24177.1°180.0°
C28C29C23C221.6°0.0°
C29C28C27H16179.9°180.0°
C27C28C29C230.0°0.0°
C28C27C26H16180.0°179.9°
C28C27C26C221.4°0.1°
C27C28C29H14180.0°180.0°
C28C27C26H17178.6°180.0°
C29C23C24C22175.6°180.0°
C29C23C24C25161.2°162.8°
C29C23C22C263.3°0.1°
C29C23C22C21179.9°179.9°
C29C23C24H1280.4°43.9°
C29C23C24H1342.8°78.3°
C23C29C28H15180.0°180.0°
C27C26C22C233.2°0.1°
C27C26C22H17180.0°179.9°
C27C26C22C21179.1°180.0°
C26C27C28H15179.9°180.0°
C23C24C25H12118.4°118.9°
C23C24C25H13118.4°119.0°
C24C23C22C26179.4°179.9°
C24C23C22C213.9°0.1°
C23C24C25C2131.8°26.4°
C23C24C25H10151.0°91.9°
C23C24C25H1187.4°144.7°
C23C24H12H13124.5°122.3°
C24C23C29H142.9°0.1°
C22C23C24C2523.2°17.2°
C23C22C26C21175.9°179.8°
C23C22C21C2517.1°17.3°
C23C22C21N20119.5°101.7°
C23C22C21H9124.9°136.2°
C22C23C24H1295.2°136.1°
C22C23C24H13141.6°101.8°
C22C23C29H14178.4°179.9°
C23C22C26H17176.7°180.0°
O19C18C17H4120.1°120.0°
O19C18C17H5120.1°120.1°
O19C18C17S14142.9°180.0°
O19C18C17H297.0°59.9°
O19C18C17H322.8°60.0°
O19C18H4H5119.6°120.1°
C24C25C21C2231.4°26.4°
C24C25C21H10119.2°118.2°
C24C25C21H11119.1°118.4°
C24C25C21N20105.6°92.6°
C24C25C21H9139.7°145.4°
C24C25H10H11122.4°123.6°
C25C24H12H13124.5°122.0°
C26C22C21C25159.4°162.9°
C26C22C21N2064.0°78.1°
C26C22C21H951.6°43.9°
C22C26C27H16178.6°179.9°
C18C17S14H2120.1°120.0°
C18C17S14H3120.1°120.0°
C18C17S14O1539.2°63.7°
C18C17S14C8158.0°175.4°
C18C17S14O1678.9°73.0°
C17C18O19H1180.0°180.0°
C18C17H2H3119.7°119.9°
C17C18H4H5119.6°119.9°
C22C21C25N20137.0°119.0°
C22C21C25H9108.2°118.9°
C22C21N20H9115.4°122.1°
C22C21N20C936.2°89.7°
C22C21N20H885.6°34.2°
C22C21C25H10150.6°91.8°
C22C21C25H1187.7°144.9°
C21C22C26H170.8°0.2°
C25C21N20H9114.2°122.1°
C25C21N20C9166.7°154.5°
C25C21N20H844.8°81.6°
C21C25H10H11122.4°123.4°
C21C25C24H1286.6°145.3°
C21C25C24H13150.2°92.7°
C17S14O15C8127.3°111.8°
C17S14O15O16108.0°131.5°
C17S14C8O16117.7°116.1°
C17S14C8C9108.1°77.8°
C17S14C8C768.1°101.6°
S14C17H2H3119.6°120.0°
S14C17C18H422.7°60.0°
S14C17C18H597.0°59.9°
C21N20C9H8121.9°124.0°
C21N20C9C896.5°90.3°
C21N20C9C1092.7°89.4°
N20C21C25H1013.6°149.2°
N20C21C25H11135.3°25.9°
O15S14C8O16126.4°127.8°
O15S14C8C97.8°38.3°
O15S14C8C7176.1°142.3°
O15S14C17H280.9°176.3°
O15S14C17H3159.3°56.3°
S14C8C9N207.4°0.1°
S14C8C9C7176.2°179.4°
S14C8C9C10178.3°179.7°
S14C8C7F124.0°0.0°
S14C8C7C6178.6°180.0°
C8S14C17H237.9°64.6°
C8S14C17H381.8°55.4°
O16S14C8C9134.3°166.1°
O16S14C8C749.6°14.5°
O16S14C17H2161.0°47.0°
O16S14C17H341.2°167.0°
N20C9C8C10170.9°179.7°
N20C9C8C7176.4°179.5°
N20C9C10F136.9°0.2°
N20C9C10C5177.6°179.8°
C9N20C21H979.1°32.4°
C9C8C7F12179.5°179.5°
C9C8C7C64.9°0.6°
C8C9C10F13178.5°179.5°
C8C9C10C56.0°0.5°
C8C9N20H825.4°145.8°
C10C9C8C75.5°0.8°
C9C10F13C5176.0°180.0°
C9C10C5C64.7°0.0°
C9C10C5S1179.3°180.0°
C10C9N20H8145.4°34.6°
C8C7F12C6174.8°180.0°
C8C7C6C54.0°0.0°
C8C7C6F11178.7°179.7°
F12C7C6C5178.6°180.0°
F12C7C6F116.8°0.3°
C7C6C5C103.4°0.3°
C7C6C5F11174.7°179.7°
C7C6C5S1178.6°179.8°
F13C10C5C6179.9°180.0°
F13C10C5S15.4°0.1°
C10C5C6S1175.2°179.9°
C10C5C6F11178.1°180.0°
C10C5S1N4120.5°90.0°
C10C5S1O31.0°156.4°
C10C5S1O2115.9°23.5°
C6C5S1N465.3°90.0°
C6C5S1O3173.2°23.5°
C6C5S1O258.3°156.4°
F11C6C5S16.7°0.1°
C5S1N4O3127.9°113.5°
C5S1N4O2121.6°113.5°
C5S1O3O2118.0°122.9°
C5S1N4H6180.0°150.0°
C5S1N4H760.0°30.1°
N4S1O3O2116.9°123.0°
S1N4H6H7120.0°179.9°
O3S1N4H652.1°96.5°
O3S1N4H767.9°83.4°
O2S1N4H658.4°36.5°
O2S1N4H7178.4°143.6°
H1O19C18H459.8°60.0°
H1O19C18H559.9°60.0°
H2C17C18H4142.8°60.1°
H2C17C18H523.1°180.0°
H3C17C18H497.4°180.0°
H3C17C18H5142.9°60.1°
H8N20C21H9159.0°156.3°
H9C21C25H10101.2°27.1°
H9C21C25H1120.5°96.2°
H10C25C24H1232.6°27.0°
H10C25C24H1390.6°149.1°
H11C25C24H12154.2°96.4°
H11C25C24H1331.0°25.6°
H14C29C28H150.0°0.0°
H15C28C27H160.1°0.0°
H16C27C26H171.4°0.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon