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5DI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.34Å
C1O5sing1.43Å1.46Å
C2O2doub1.21Å1.33Å
C2C3sing1.52Å1.50Å
C3O3sing1.43Å1.43Å
C3C4sing1.53Å1.53Å
C4O4sing1.43Å1.43Å
C4C5sing1.53Å1.54Å
C5O5sing1.43Å1.42Å
C5C6sing1.53Å1.52Å
C5F1sing1.40Å1.32Å
C6O6sing1.43Å1.44Å
C1H11Csing1.09Å1.10Å
C1H12Csing1.09Å1.10Å
C3H3Csing1.09Å1.10Å
O3H3Osing0.97Å0.95Å
C4H4Csing1.09Å1.10Å
O4H4Osing0.97Å0.95Å
C6H61Csing1.09Å1.10Å
C6H62Csing1.09Å1.10Å
O6H6Osing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O5122.3°108.3°
C1C2O2120.1°121.1°
C1C2C3118.5°117.8°
C2C1H11C106.2°109.7°
C2C1H12C106.2°109.7°
C1O5C5122.3°114.1°
O5C1H11C106.2°109.7°
O5C1H12C106.2°109.7°
O2C2C3121.3°121.1°
C2C3O3109.4°109.8°
C2C3C4110.0°107.9°
C2C3H3C108.6°109.7°
O3C3C4111.1°109.8°
O3C3H3C109.5°109.8°
C3O3H3O109.5°113.9°
C3C4O4106.3°109.6°
C3C4C5112.8°109.0°
C4C3H3C108.2°109.8°
C3C4H4C107.9°109.5°
O4C4C5112.8°109.5°
O4C4H4C109.3°109.5°
C4O4H4O109.5°114.0°
C4C5O5110.5°109.8°
C4C5C6114.7°109.4°
C4C5F1111.8°109.4°
C5C4H4C107.7°109.7°
O5C5C6107.7°109.4°
O5C5F1106.1°109.4°
C6C5F1105.7°109.3°
C5C6O6113.7°109.5°
C5C6H61C108.4°109.5°
C5C6H62C108.4°109.5°
O6C6H61C108.4°109.5°
O6C6H62C108.4°109.5°
C6O6H6O109.5°114.0°
H11CC1H12C109.4°109.7°
H61CC6H62C109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O5H11C121.8°119.8°
C2C1O5H12C121.8°119.7°
C1C2O2C3179.1°179.9°
C1C2C3O3159.7°71.1°
C1C2C3C437.4°48.5°
C2C1O5C56.4°55.6°
C2C1H11CH12C114.2°120.6°
C1C2C3H3C80.9°168.1°
O5C1C2O2167.2°131.4°
O5C1C2C313.6°48.7°
C1O5C5C423.1°64.8°
C1O5C5C6102.9°175.1°
C1O5C5F1144.4°55.3°
O5C1H11CH12C114.3°120.5°
O2C2C3O321.2°108.8°
O2C2C3C4143.5°131.6°
O2C2C1H11C45.5°108.8°
O2C2C1H12C71.0°11.7°
O2C2C3H3C98.3°12.0°
C2C3O3C4121.7°118.5°
C2C3O3H3C118.9°120.7°
C2C3C4H3C118.5°119.6°
C2C3C4O4178.5°67.9°
C2C3C4C554.5°51.9°
C3C2C1H11C135.4°71.0°
C3C2C1H12C108.2°168.4°
C2C3O3H3O9.7°60.0°
C2C3C4H4C64.4°171.9°
O3C3C4H3C120.2°120.8°
O3C3C4O460.2°172.4°
O3C3C4C5175.8°67.7°
O3C3C4H4C56.9°52.3°
C3C4O4C5124.0°119.5°
C3C4O4H4C116.2°120.1°
C3C4C5H4C118.9°119.9°
C3C4C5O547.3°61.3°
C3C4C5C674.6°178.5°
C3C4C5F1165.2°58.8°
C4C3O3H3O131.3°178.5°
C3C4O4H4O180.0°60.0°
O4C4C5H4C120.7°120.2°
O4C4C5O5167.7°58.5°
O4C4C5C645.8°61.6°
O4C4C5F174.5°178.6°
O4C4C3H3C60.0°51.6°
C4C5O5C6125.9°120.1°
C4C5O5F1121.3°120.1°
C4C5C6F1123.5°119.8°
C4C5C6O668.7°60.0°
C5C4C3H3C64.0°171.5°
C5C4O4H4O56.0°179.5°
C4C5C6H61C51.9°180.0°
C4C5C6H62C170.6°60.0°
O5C5C6F1113.1°119.8°
O5C5C6O654.7°179.6°
C5O5C1H11C128.1°64.1°
C5O5C1H12C115.4°175.3°
O5C5C4H4C71.6°178.8°
O5C5C6H61C175.3°59.7°
O5C5C6H62C66.0°60.4°
C5C6O6H61C120.6°120.0°
C5C6O6H62C120.7°120.0°
C6C5C4H4C166.5°58.6°
C5C6H61CH62C118.1°120.0°
C5C6O6H6O180.0°180.0°
F1C5C6O6167.7°59.8°
F1C5C4H4C46.2°61.1°
F1C5C6H61C71.7°60.2°
F1C5C6H62C47.1°179.8°
O6C6H61CH62C118.0°120.0°
H3CC3O3H3O109.2°60.7°
H3CC3C4H4C177.2°68.5°
H4CC4O4H4O63.8°60.2°
H61CC6O6H6O59.3°60.1°
H62CC6O6H6O59.4°60.0°

223532

PDB entries from 2024-08-07

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