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5DE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O19C15doub1.22Å1.21Å
C15O16sing1.35Å1.33Å
C15C7sing1.47Å1.50Å
O16C17sing1.45Å1.44Å
C17C18sing1.53Å1.54Å
C17H171sing1.09Å1.11Å
C17H172sing1.09Å1.12Å
C18H181sing1.09Å1.11Å
C18H182sing1.09Å1.12Å
C18H183sing1.09Å1.12Å
C7C8sing1.41Å1.40ÅAromatic
C7C5doub1.38Å1.40ÅAromatic
C8N10doub1.30Å1.34ÅAromatic
C8C9sing1.51Å1.52Å
N10N4sing1.40Å1.33ÅAromatic
C9H91sing1.09Å1.12Å
C9H92sing1.09Å1.12Å
C9H93sing1.09Å1.11Å
C5C6sing1.51Å1.52Å
C5N4sing1.34Å1.34ÅAromatic
C6H61sing1.09Å1.12Å
C6H62sing1.09Å1.12Å
C6H63sing1.09Å1.11Å
N4C3sing1.40Å1.34ÅAromatic
C3C2doub1.39Å1.41ÅAromatic
C3C11sing1.39Å1.41ÅAromatic
C2C1sing1.38Å1.40ÅAromatic
C2H2sing1.08Å1.10Å
C1C13doub1.39Å1.42ÅAromatic
C1H1sing1.08Å1.10Å
C11C12doub1.38Å1.39ÅAromatic
C11H11sing1.08Å1.10Å
C12C13sing1.39Å1.39ÅAromatic
C12H12sing1.08Å1.10Å
C13N14sing1.40Å1.35Å
N14H141sing0.97Å1.02Å
N14H142sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O19C15O16122.9°120.0°
O19C15C7119.7°120.0°
O16C15C7117.3°120.1°
C15O16C17117.6°120.0°
C15C7C8128.1°126.4°
C15C7C5127.1°126.5°
O16C17C18110.2°109.5°
O16C17H171112.0°109.5°
O16C17H172111.9°109.4°
C18C17H171111.9°109.5°
C18C17H172112.0°109.5°
C17C18H181111.9°109.5°
C17C18H182110.1°109.5°
C17C18H183112.0°109.5°
H171C17H17298.5°109.5°
H181C18H182112.0°109.4°
H181C18H18398.5°109.5°
H182C18H183111.9°109.5°
C8C7C5104.8°107.1°
C7C8N10109.0°108.1°
C7C8C9129.9°126.0°
C7C5C6127.1°126.2°
C7C5N4107.5°107.5°
N10C8C9121.1°125.9°
C8N10N4108.1°108.9°
C8C9H91105.1°109.5°
C8C9H92129.8°109.5°
C8C9H93105.1°109.5°
N10N4C5110.6°108.5°
N10N4C3123.5°125.7°
H91C9H92105.1°109.5°
H91C9H93104.1°109.4°
H92C9H93105.1°109.5°
C6C5N4125.4°126.3°
C5C6H61106.0°109.4°
C5C6H62127.1°109.5°
C5C6H63106.0°109.4°
C5N4C3125.9°125.8°
H61C6H62106.0°109.5°
H61C6H63103.4°109.5°
H62C6H63106.0°109.5°
N4C3C2123.3°120.0°
N4C3C11116.4°120.0°
C2C3C11120.3°120.0°
C3C2C1119.2°120.0°
C3C2H2120.5°120.0°
C3C11C12120.3°120.0°
C3C11H11120.3°120.0°
C1C2H2120.3°120.0°
C2C1C13120.0°120.0°
C2C1H1119.5°120.0°
C13C1H1120.5°120.0°
C1C13C12120.1°120.0°
C1C13N14121.5°120.0°
C12C11H11119.4°120.0°
C11C12C13120.1°120.0°
C11C12H12119.9°120.0°
C13C12H12120.0°120.0°
C12C13N14118.3°120.0°
C13N14H141107.9°120.0°
C13N14H142121.5°120.1°
H141N14H142108.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O19C15O16C7177.1°180.0°
O19C15O16C173.6°0.0°
O19C15C7C83.6°90.1°
O19C15C7C5178.3°90.3°
C15O16C17C18179.2°179.9°
C15O16C17H17155.5°60.0°
C15O16C17H17254.0°60.1°
O16C15C7C8173.6°89.9°
O16C15C7C54.5°89.7°
C7C15O16C17173.5°180.0°
C15C7C8C5178.5°179.7°
C15C7C8N10178.9°180.0°
C15C7C8C91.7°0.0°
C15C7C5C61.8°0.4°
C15C7C5N4179.1°179.9°
O16C17C18H171125.3°120.0°
O16C17C18H172125.2°120.0°
O16C17H171H172117.9°120.0°
O16C17C18H18154.7°180.0°
O16C17C18H182180.0°60.0°
O16C17C18H18354.8°60.0°
C18C17H171H172117.9°120.0°
C17C18H181H182124.2°120.0°
C17C18H181H183117.9°120.0°
C17C18H182H183125.3°120.1°
H171C17C18H181180.0°60.0°
H171C17C18H18254.7°59.9°
H171C17C18H18370.5°180.0°
H172C17C18H18170.5°60.1°
H172C17C18H18254.8°180.0°
H172C17C18H183NaN°60.0°
H181C18H182H183109.5°119.9°
C7C8N10C9179.5°180.0°
C7C8N10N40.1°0.0°
C7C8C9H9154.8°90.0°
C7C8C9H92180.0°150.0°
C7C8C9H9354.7°29.9°
C8C7C5C6179.7°180.0°
C8C7C5N40.6°0.4°
C5C7C8N100.4°0.3°
C5C7C8C9179.9°179.7°
C7C5N4N100.6°0.4°
C7C5C6N4179.0°179.4°
C7C5C6H6154.7°90.6°
C7C5C6H62180.0°29.5°
C7C5C6H6354.7°149.5°
C7C5N4C3178.0°179.8°
N10C8C9H91124.6°90.0°
N10C8C9H920.6°30.0°
N10C8C9H93125.9°150.1°
C8N10N4C50.3°0.3°
C8N10N4C3177.8°180.0°
C9C8N10N4179.6°180.0°
C8C9H91H92139.5°120.0°
C8C9H91H93110.3°120.0°
C8C9H92H93125.3°120.1°
N10N4C5C6179.7°179.9°
N10N4C5C3177.5°179.8°
N10N4C3C284.2°139.7°
N10N4C3C1195.1°39.9°
H91C9H92H93109.5°119.9°
C5C6H61H62137.4°120.1°
C5C6H61H63111.3°119.9°
C5C6H62H63125.3°120.0°
C6C5N4C32.8°0.3°
N4C5C6H61126.3°90.0°
N4C5C6H621.0°150.0°
N4C5C6H63124.3°30.0°
C5N4C3C298.7°40.0°
C5N4C3C1182.0°140.4°
H61C6H62H63109.4°120.0°
N4C3C2C11179.3°179.7°
N4C3C2C1179.3°179.7°
N4C3C2H20.7°0.2°
N4C3C11C12179.8°180.0°
N4C3C11H110.2°0.1°
C3C2C1H2180.0°179.5°
C3C2C1C130.8°0.5°
C3C2C1H1179.2°179.7°
C2C3C11C120.8°0.4°
C2C3C11H11179.2°179.7°
C11C3C2C10.0°0.6°
C11C3C2H2180.0°179.9°
C3C11C12H11180.0°179.9°
C3C11C12C130.8°0.1°
C3C11C12H12179.2°179.9°
C2C1C13H1180.0°179.8°
C2C1C13C120.9°0.2°
C2C1C13N14179.4°179.7°
H2C2C1C13179.2°180.0°
H2C2C1H10.8°0.2°
C1C13C12C110.1°0.0°
C1C13C12N14179.7°180.0°
C1C13C12H12179.9°180.0°
C1C13N14H14154.7°0.1°
C1C13N14H142180.0°179.9°
H1C1C13C12179.1°180.0°
H1C1C13N140.6°0.1°
C11C12C13H12180.0°179.9°
C11C12C13N14179.8°180.0°
H11C11C12C13179.2°180.0°
H11C11C12H120.8°0.0°
C12C13N14H141125.6°180.0°
C12C13N14H1420.3°0.0°
H12C12C13N140.2°0.1°
C13N14H141H142133.0°180.0°

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PDB entries from 2024-10-16

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