Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C8doub1.21Å1.21Å
C8C9sing1.51Å1.49Å
C8N1sing1.35Å1.34Å
N1C7sing1.46Å1.47Å
C7C6sing1.53Å1.54Å
C6C5sing1.53Å1.55Å
C5C4sing1.53Å1.53Å
C4C3sing1.53Å1.53Å
C3C2sing1.53Å1.52Å
C2Nsing1.46Å1.47Å
NC1sing1.35Å1.37Å
C1Odoub1.21Å1.25Å
C1Csing1.51Å1.52Å
C9H91Csing1.09Å1.10Å
C9H92Csing1.09Å1.10Å
C9H93Csing1.09Å1.10Å
N1H1sing0.97Å1.00Å
C7H71Csing1.09Å1.10Å
C7H72Csing1.09Å1.10Å
C6H61Csing1.09Å1.10Å
C6H62Csing1.09Å1.10Å
C5H51Csing1.09Å1.10Å
C5H52Csing1.09Å1.10Å
C4H41Csing1.09Å1.10Å
C4H42Csing1.09Å1.10Å
C3H31Csing1.09Å1.10Å
C3H32Csing1.09Å1.10Å
C2H21Csing1.09Å1.10Å
C2H22Csing1.09Å1.10Å
NHsing0.97Å1.00Å
CHC1sing1.09Å1.10Å
CHC2sing1.09Å1.10Å
CHC3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C8C9120.6°119.9°
O1C8N1121.0°120.0°
C9C8N1118.3°120.0°
C8C9H91C109.5°109.4°
C8C9H92C109.4°109.4°
C8C9H93C109.5°109.5°
C8N1C7125.3°120.0°
C8N1H1117.3°120.0°
N1C7C6113.4°109.5°
C7N1H1117.4°120.0°
N1C7H71C108.5°109.5°
N1C7H72C108.5°109.5°
C7C6C5115.0°109.5°
C6C7H71C108.4°109.4°
C6C7H72C108.5°109.5°
C7C6H61C108.1°109.4°
C7C6H62C108.1°109.5°
C6C5C4114.2°109.5°
C5C6H61C108.1°109.5°
C5C6H62C108.1°109.5°
C6C5H51C108.3°109.5°
C6C5H52C108.3°109.5°
C5C4C3112.3°109.5°
C4C5H51C108.3°109.5°
C4C5H52C108.3°109.4°
C5C4H41C108.8°109.5°
C5C4H42C108.8°109.4°
C4C3C2111.2°109.5°
C3C4H41C108.7°109.5°
C3C4H42C108.8°109.5°
C4C3H31C109.0°109.5°
C4C3H32C109.0°109.5°
C3C2N113.7°109.5°
C2C3H31C109.1°109.4°
C2C3H32C109.1°109.5°
C3C2H21C108.4°109.4°
C3C2H22C108.4°109.4°
C2NC1125.4°120.0°
NC2H21C108.4°109.5°
NC2H22C108.4°109.5°
C2NH117.3°120.0°
NC1O125.0°120.0°
NC1C114.2°120.0°
C1NH117.3°120.0°
OC1C120.7°119.9°
C1CHC1109.5°109.4°
C1CHC2109.4°109.5°
C1CHC3109.5°109.5°
H91CC9H92C109.5°109.5°
H91CC9H93C109.4°109.5°
H92CC9H93C109.5°109.5°
H71CC7H72C109.5°109.5°
H61CC6H62C109.5°109.4°
H51CC5H52C109.5°109.5°
H41CC4H42C109.5°109.5°
H31CC3H32C109.4°109.4°
H21CC2H22C109.5°109.5°
HC1CHC2109.5°109.5°
HC1CHC3109.5°109.5°
HC2CHC3109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C8C9N1178.2°179.8°
O1C8N1C7176.2°0.0°
O1C8C9H91C0.0°90.0°
O1C8C9H92C120.0°150.0°
O1C8C9H93C120.0°30.0°
O1C8N1H13.8°179.9°
C9C8N1C72.0°179.7°
C8C9H91CH92C120.0°119.9°
C8C9H91CH93C120.0°120.0°
C8C9H92CH93C120.0°120.0°
C9C8N1H1178.0°0.2°
C8N1C7H1180.0°179.9°
C8N1C7C6160.9°179.9°
N1C8C9H91C178.2°89.7°
N1C8C9H92C58.2°30.2°
N1C8C9H93C61.8°150.2°
C8N1C7H71C40.3°60.0°
C8N1C7H72C78.6°60.0°
N1C7C6H71C120.6°120.0°
N1C7C6H72C120.6°120.0°
N1C7C6C5143.3°180.0°
N1C7H71CH72C118.2°120.0°
N1C7C6H61C95.9°60.0°
N1C7C6H62C22.5°60.0°
C7C6C5H61C120.8°120.0°
C7C6C5H62C120.8°120.0°
C7C6C5C472.3°180.0°
C6C7N1H119.2°0.0°
C6C7H71CH72C118.2°120.0°
C7C6H61CH62C117.5°120.0°
C7C6C5H51C48.4°60.0°
C7C6C5H52C167.0°60.0°
C6C5C4H51C120.7°120.0°
C6C5C4H52C120.7°120.0°
C6C5C4C393.6°180.0°
C5C6C7H71C22.7°60.0°
C5C6C7H72C96.1°60.0°
C5C6H61CH62C117.5°120.0°
C6C5H51CH52C117.9°120.1°
C6C5C4H41C146.0°60.0°
C6C5C4H42C26.9°60.0°
C5C4C3H41C120.4°120.0°
C5C4C3H42C120.4°119.9°
C5C4C3C2135.1°180.0°
C4C5C6H61C166.9°60.0°
C4C5C6H62C48.5°60.0°
C4C5H51CH52C117.9°119.9°
C5C4H41CH42C118.7°119.9°
C5C4C3H31C104.6°60.0°
C5C4C3H32C14.9°60.0°
C4C3C2H31C120.3°120.0°
C4C3C2H32C120.3°120.0°
C4C3C2N163.9°180.0°
C3C4C5H51C27.1°60.0°
C3C4C5H52C145.7°60.0°
C3C4H41CH42C118.7°120.1°
C4C3H31CH32C119.2°120.0°
C4C3C2H21C75.5°60.0°
C4C3C2H22C43.2°59.9°
C3C2NH21C120.6°119.9°
C3C2NH22C120.6°120.0°
C3C2NC1135.7°179.9°
C2C3C4H41C14.7°60.0°
C2C3C4H42C104.4°60.0°
C2C3H31CH32C119.2°120.0°
C3C2H21CH22C118.0°119.9°
C3C2NH44.3°0.0°
C2NC1H180.0°179.9°
C2NC1O7.9°0.0°
C2NC1C167.8°180.0°
NC2C3H31C43.6°60.0°
NC2C3H32C75.9°60.0°
NC2H21CH22C118.1°120.1°
NC1OC175.5°180.0°
C1NC2H21C103.7°60.0°
C1NC2H22C15.1°60.0°
NC1CHC1175.9°0.0°
NC1CHC255.9°120.0°
NC1CHC364.0°119.9°
OC1NH172.1°179.9°
OC1CHC10.0°180.0°
OC1CHC2120.0°60.1°
OC1CHC3120.0°60.0°
CC1NH12.2°0.1°
C1CHC1HC2120.0°120.0°
C1CHC1HC3120.0°120.0°
C1CHC2HC3120.0°120.1°
H91CC9H92CH93C120.0°120.1°
H1N1C7H71C139.7°119.9°
H1N1C7H72C101.4°120.1°
H71CC7C6H61C143.5°180.0°
H71CC7C6H62C98.1°60.0°
H72CC7C6H61C24.7°60.0°
H72CC7C6H62C143.1°180.0°
H61CC6C5H51C72.4°180.0°
H61CC6C5H52C46.2°60.0°
H62CC6C5H51C169.2°60.0°
H62CC6C5H52C72.2°179.9°
H51CC5C4H41C93.3°180.0°
H51CC5C4H42C147.5°60.0°
H52CC5C4H41C25.3°60.0°
H52CC5C4H42C93.8°180.0°
H41CC4C3H31C135.0°180.0°
H41CC4C3H32C105.6°60.0°
H42CC4C3H31C15.9°60.0°
H42CC4C3H32C135.3°179.9°
H31CC3C2H21C164.2°180.0°
H31CC3C2H22C77.0°60.1°
H32CC3C2H21C44.8°60.0°
H32CC3C2H22C163.5°180.0°
H21CC2NH76.3°119.9°
H22CC2NH164.9°120.0°
HC1CHC2HC3120.0°120.0°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon