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5D1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAKNAGsing1.46Å1.49Å
CAFCAEdoub1.38Å1.38ÅAromatic
CAFCAAsing1.39Å1.41ÅAromatic
CAECADsing1.39Å1.38ÅAromatic
NAGCAAsing1.38Å1.39Å
NAGCAHsing1.34Å1.35Å
CAACABdoub1.41Å1.43ÅAromatic
OALCAHdoub1.22Å1.25Å
CAHCAIsing1.40Å1.43Å
CADCACdoub1.37Å1.38ÅAromatic
CBECBDdoub1.38Å1.40ÅAromatic
CBECBFsing1.38Å1.41ÅAromatic
CABCACsing1.40Å1.40ÅAromatic
CABCAJsing1.47Å1.42Å
CBDCBCsing1.38Å1.41ÅAromatic
CAICAJdoub1.37Å1.42Å
CBFCBAdoub1.38Å1.42ÅAromatic
CAJOAMsing1.35Å1.39Å
CBCCBGsing1.51Å1.39Å
CBCCBBdoub1.38Å1.40ÅAromatic
OAMCANsing1.43Å1.47Å
CBACBBsing1.38Å1.42ÅAromatic
CBACAZsing1.51Å1.42Å
CAVCAUsing1.53Å1.51Å
CAVNAWsing1.47Å1.48Å
CAZNAWsing1.47Å1.51Å
CANCAOsing1.53Å1.55Å
CAUCATsing1.53Å1.57Å
NAWCAXsing1.47Å1.49Å
CAPCAOsing1.53Å1.55Å
CAPCAQsing1.51Å1.62Å
CAQOASdoub1.21Å1.24Å
CAQNARsing1.35Å1.36Å
CATCBHsing1.53Å1.56Å
CATCAYsing1.53Å1.57Å
CBHNARsing1.47Å1.48Å
CAXCAYsing1.53Å1.52Å
CBGH1sing1.09Å1.10Å
CBGH2sing1.09Å1.10Å
CBGH3sing1.09Å1.10Å
CBBH4sing1.08Å1.08Å
CBDH5sing1.08Å1.08Å
CBEH6sing1.08Å1.08Å
CBFH7sing1.08Å1.08Å
CAZH8sing1.09Å1.10Å
CAZH9sing1.09Å1.10Å
CAXH11sing1.09Å1.10Å
CAXH12sing1.09Å1.10Å
CAYH13sing1.09Å1.10Å
CAYH14sing1.09Å1.10Å
CAVH15sing1.09Å1.10Å
CAVH16sing1.09Å1.10Å
CAUH17sing1.09Å1.10Å
CAUH18sing1.09Å1.10Å
CATH19sing1.09Å1.10Å
CBHH20sing1.09Å1.10Å
CBHH21sing1.09Å1.10Å
NARH22sing0.97Å1.00Å
CAPH23sing1.09Å1.10Å
CAPH24sing1.09Å1.10Å
CAOH25sing1.09Å1.10Å
CAOH26sing1.09Å1.10Å
CANH27sing1.09Å1.10Å
CANH28sing1.09Å1.10Å
CACH29sing1.08Å1.08Å
CADH30sing1.08Å1.08Å
CAEH31sing1.08Å1.08Å
CAFH32sing1.08Å1.08Å
CAKH33sing1.09Å1.10Å
CAKH34sing1.09Å1.10Å
CAKH35sing1.09Å1.10Å
CAIH36sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAKNAGCAA118.4°119.4°
CAKNAGCAH118.5°119.5°
NAGCAKH33109.5°109.5°
NAGCAKH34109.4°109.4°
NAGCAKH35109.4°109.5°
CAECAFCAA119.8°119.8°
CAFCAECAD121.0°120.7°
CAFCAEH31119.5°119.7°
CAECAFH32120.1°120.1°
CAFCAANAG121.1°121.0°
CAFCAACAB118.5°119.4°
CAACAFH32120.1°120.1°
CAECADCAC120.7°120.5°
CAECADH30119.7°119.7°
CADCAEH31119.5°119.6°
CAANAGCAH123.0°121.1°
NAGCAACAB119.9°119.6°
NAGCAHOAL120.6°119.1°
NAGCAHCAI118.4°121.8°
CAACABCAC119.6°119.9°
CAACABCAJ119.0°118.9°
OALCAHCAI120.9°119.0°
CAHCAICAJ121.5°120.1°
CAHCAIH36119.3°120.0°
CADCACCAB120.0°119.8°
CADCACH29120.0°120.1°
CACCADH30119.7°119.7°
CBDCBECBF119.6°120.0°
CBECBDCBC120.7°120.0°
CBECBDH5119.7°120.0°
CBDCBEH6120.2°120.0°
CBECBFCBA120.4°120.0°
CBFCBEH6120.1°120.0°
CBECBFH7119.8°120.0°
CACCABCAJ121.2°121.2°
CABCACH29120.0°120.1°
CABCAJCAI117.9°118.4°
CABCAJOAM115.8°120.8°
CBDCBCCBG121.3°120.0°
CBDCBCCBB119.4°120.0°
CBCCBDH5119.6°120.0°
CAICAJOAM126.3°120.8°
CAJCAIH36119.2°119.9°
CBFCBACBB118.6°120.0°
CBFCBACAZ120.9°120.0°
CBACBFH7119.8°120.0°
CAJOAMCAN124.9°117.0°
CBGCBCCBB119.2°120.0°
CBCCBGH1109.5°109.5°
CBCCBGH2109.5°109.5°
CBCCBGH3109.5°109.5°
CBCCBBCBA121.1°120.0°
CBCCBBH4119.4°120.0°
OAMCANCAO106.7°109.5°
OAMCANH27110.1°109.4°
OAMCANH28110.2°109.4°
CBBCBACAZ120.4°120.0°
CBACBBH4119.4°120.0°
CBACAZNAW114.6°109.5°
CBACAZH8108.2°109.4°
CBACAZH9108.2°109.4°
CAUCAVNAW109.4°109.5°
CAVCAUCAT109.9°109.3°
CAUCAVH15109.5°109.5°
CAUCAVH16109.5°109.5°
CAVCAUH17109.4°109.5°
CAVCAUH18109.4°109.5°
CAVNAWCAZ110.7°111.0°
CAVNAWCAX116.0°111.2°
NAWCAVH15109.5°109.5°
NAWCAVH16109.5°109.4°
CAZNAWCAX114.7°111.0°
NAWCAZH8108.2°109.5°
NAWCAZH9108.2°109.5°
CANCAOCAP113.8°109.5°
CANCAOH25108.4°109.5°
CANCAOH26108.4°109.4°
CAOCANH27110.2°109.5°
CAOCANH28110.2°109.5°
CAUCATCBH109.3°109.5°
CAUCATCAY113.8°109.1°
CATCAUH17109.4°109.5°
CATCAUH18109.3°109.5°
CAUCATH19107.7°109.6°
NAWCAXCAY111.3°109.6°
NAWCAXH11109.0°109.5°
NAWCAXH12109.0°109.5°
CAOCAPCAQ109.6°109.5°
CAOCAPH23109.4°109.5°
CAOCAPH24109.4°109.5°
CAPCAOH25108.4°109.5°
CAPCAOH26108.4°109.5°
CAPCAQOAS122.9°120.0°
CAPCAQNAR122.3°120.1°
CAQCAPH23109.4°109.4°
CAQCAPH24109.5°109.4°
OASCAQNAR114.6°120.0°
CAQNARCBH129.2°120.0°
CAQNARH22115.4°119.9°
CBHCATCAY110.3°109.5°
CATCBHNAR106.3°109.5°
CBHCATH19107.8°109.5°
CATCBHH20110.3°109.5°
CATCBHH21110.2°109.5°
CATCAYCAX109.8°109.3°
CATCAYH13109.4°109.5°
CATCAYH14109.4°109.5°
CAYCATH19107.7°109.6°
NARCBHH20110.3°109.4°
NARCBHH21110.2°109.4°
CBHNARH22115.4°120.0°
CAYCAXH11109.0°109.5°
CAYCAXH12109.0°109.4°
CAXCAYH13109.4°109.5°
CAXCAYH14109.4°109.5°
H1CBGH2109.4°109.5°
H1CBGH3109.5°109.5°
H2CBGH3109.4°109.5°
H8CAZH9109.5°109.5°
H11CAXH12109.5°109.4°
H13CAYH14109.5°109.5°
H15CAVH16109.5°109.4°
H17CAUH18109.5°109.5°
H20CBHH21109.5°109.5°
H23CAPH24109.4°109.4°
H25CAOH26109.4°109.4°
H27CANH28109.5°109.5°
H33CAKH34109.5°109.5°
H33CAKH35109.4°109.5°
H34CAKH35109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAKNAGCAACAF7.5°0.1°
CAKNAGCAACAH175.5°180.0°
CAKNAGCAACAB179.5°180.0°
CAKNAGCAHOAL0.2°0.0°
CAKNAGCAHCAI178.4°179.8°
NAGCAKH33H34120.0°120.0°
NAGCAKH33H35120.0°120.1°
NAGCAKH34H35120.0°119.9°
CAECAFCAAH32180.0°179.9°
CAFCAECADH31180.0°180.0°
CAECAFCAANAG177.9°180.0°
CAECAFCAACAB5.8°0.0°
CAFCAECADCAC0.7°0.1°
CAFCAECADH30179.3°180.0°
CAACAFCAECAD1.8°0.0°
CAFCAANAGCAB172.0°179.9°
CAFCAANAGCAH176.9°180.0°
CAFCAACABCAC7.5°0.0°
CAFCAACABCAJ175.9°180.0°
CAACAFCAEH31178.3°180.0°
CAECADCACH30180.0°180.0°
CAECADCACCAB1.0°0.1°
CAECADCACH29179.0°180.0°
CADCAECAFH32178.2°179.9°
CAANAGCAHOAL175.3°180.0°
CAANAGCAHCAI2.9°0.2°
NAGCAACABCAC179.7°179.9°
NAGCAACABCAJ3.7°0.1°
NAGCAACAFH322.1°0.1°
CAANAGCAKH33180.0°90.0°
CAANAGCAKH3460.0°149.9°
CAANAGCAKH3560.0°30.0°
CAHNAGCAACAB5.0°0.0°
NAGCAHOALCAI178.2°179.8°
NAGCAHCAICAJ0.2°0.4°
CAHNAGCAKH334.3°90.0°
CAHNAGCAKH34115.7°30.1°
CAHNAGCAKH35124.3°150.0°
NAGCAHCAIH36179.8°180.0°
CAACABCACCAD5.1°0.0°
CAACABCACCAJ176.5°180.0°
CAACABCAJCAI0.7°0.3°
CAACABCAJOAM177.9°180.0°
CAACABCACH29174.9°179.9°
CABCAACAFH32174.2°179.9°
OALCAHCAICAJ178.5°179.8°
OALCAHCAIH361.5°0.2°
CAHCAICAJCAB1.2°0.5°
CAHCAICAJH36180.0°179.6°
CAHCAICAJOAM179.7°179.9°
CADCACCABH29180.0°179.9°
CADCACCABCAJ178.4°179.9°
CACCADCAEH31179.2°180.0°
CBDCBECBFH6180.0°180.0°
CBECBDCBCH5180.0°179.9°
CBDCBECBFCBA1.6°0.3°
CBECBDCBCCBG179.5°180.0°
CBECBDCBCCBB0.9°0.2°
CBDCBECBFH7178.4°179.9°
CBFCBECBDCBC1.2°0.1°
CBECBFCBAH7180.0°179.6°
CBECBFCBACBB1.6°0.3°
CBECBFCBACAZ179.0°180.0°
CBFCBECBDH5178.8°180.0°
CACCABCAJCAI177.3°179.7°
CACCABCAJOAM1.4°0.1°
CABCACCADH30179.0°179.9°
CABCAJCAIOAM178.5°179.7°
CABCAJOAMCAN173.0°180.0°
CAJCABCACH291.7°0.0°
CABCAJCAIH36178.8°179.9°
CBDCBCCBGCBB179.6°179.8°
CBDCBCCBBCBA1.0°0.2°
CBDCBCCBGH189.8°90.2°
CBDCBCCBGH2150.2°29.8°
CBDCBCCBGH330.2°149.8°
CBDCBCCBBH4179.1°179.7°
CBCCBDCBEH6178.8°179.9°
CAICAJOAMCAN5.5°0.3°
CBFCBACBBCBC1.3°0.0°
CBFCBACBBCAZ177.3°179.7°
CBFCBACAZNAW93.0°90.0°
CBFCBACBBH4178.7°180.0°
CBACBFCBEH6178.4°179.7°
CBFCBACAZH8146.2°150.1°
CBFCBACAZH927.7°30.0°
CAJOAMCANCAO171.5°179.9°
CAJOAMCANH2751.9°60.0°
CAJOAMCANH2869.0°60.0°
OAMCAJCAIH360.3°0.3°
CBGCBCCBBCBA179.5°180.0°
CBCCBGH1H2120.0°120.0°
CBCCBGH1H3120.0°120.0°
CBCCBGH2H3120.0°120.0°
CBGCBCCBBH40.5°0.0°
CBGCBCCBDH50.5°0.1°
CBCCBBCBAH4180.0°180.0°
CBCCBBCBACAZ178.7°179.7°
CBBCBCCBGH189.8°90.0°
CBBCBCCBGH230.2°150.0°
CBBCBCCBGH3150.2°30.0°
CBBCBCCBDH5179.1°179.7°
OAMCANCAOH27119.5°120.0°
OAMCANCAOH28119.6°119.9°
OAMCANCAOCAP61.1°180.0°
OAMCANCAOH2559.6°60.0°
OAMCANCAOH26178.3°60.0°
OAMCANH27H28121.3°119.9°
CBBCBACAZNAW89.7°89.8°
CBBCBACBFH7178.4°179.9°
CBBCBACAZH831.1°30.2°
CBBCBACAZH9149.6°150.2°
CBACAZNAWCAV63.2°65.7°
CBACAZNAWH8120.8°119.9°
CBACAZNAWH9120.8°120.0°
CBACAZNAWCAX70.3°170.0°
CAZCBACBBH41.4°0.3°
CAZCBACBFH71.0°0.4°
CBACAZH8H9117.7°120.0°
CAUCAVNAWH15120.0°120.1°
CAUCAVNAWH16120.0°120.0°
CAUCAVNAWCAZ161.0°174.2°
CAVCAUCATH17120.1°120.0°
CAVCAUCATH18120.1°119.9°
CAUCAVNAWCAX66.1°61.7°
CAVCAUCATCBH137.0°62.2°
CAVCAUCATCAY13.2°57.6°
CAUCAVH15H16120.0°120.0°
CAVCAUH17H18119.8°120.0°
CAVCAUCATH19106.1°177.6°
CAVNAWCAZCAX133.5°124.3°
NAWCAVCAUCAT44.5°59.2°
CAVNAWCAXCAY20.0°61.7°
CAVNAWCAZH8176.0°54.2°
CAVNAWCAZH957.5°174.3°
CAVNAWCAXH11100.3°58.3°
CAVNAWCAXH12140.3°178.3°
NAWCAVH15H16120.0°119.9°
NAWCAVCAUH1775.6°60.9°
NAWCAVCAUH18164.5°179.1°
CAZNAWCAXCAY151.0°174.1°
NAWCAZH8H9117.6°120.1°
CAZNAWCAXH1130.7°65.8°
CAZNAWCAXH1288.7°54.1°
CAZNAWCAVH1579.0°54.1°
CAZNAWCAVH1641.0°65.8°
CANCAOCAPH25120.6°120.0°
CANCAOCAPH26120.7°120.0°
CANCAOCAPCAQ135.0°180.0°
CANCAOCAPH23105.0°60.0°
CANCAOCAPH2415.0°60.0°
CANCAOH25H26118.0°119.9°
CAOCANH27H28121.3°120.0°
CAUCATCBHCAY125.8°119.6°
CAUCATCBHH19116.9°120.2°
CAUCATCAYH19119.3°120.0°
CAUCATCBHNAR64.5°175.0°
CAUCATCAYCAX57.1°57.6°
CAUCATCAYH13177.1°177.6°
CAUCATCAYH1463.0°62.4°
CATCAUCAVH1575.5°179.2°
CATCAUCAVH16164.5°60.8°
CATCAUH17H18119.8°120.1°
CAUCATCBHH2055.0°55.1°
CAUCATCBHH21176.0°65.0°
NAWCAXCAYCAT38.9°59.2°
NAWCAXCAYH11120.3°120.0°
NAWCAXCAYH12120.3°120.0°
CAXNAWCAZH850.5°70.1°
CAXNAWCAZH9169.0°50.0°
NAWCAXH11H12119.2°120.0°
NAWCAXCAYH13158.9°179.1°
NAWCAXCAYH1481.2°60.8°
CAXNAWCAVH1553.9°178.3°
CAXNAWCAVH16173.9°58.3°
CAOCAPCAQH23120.0°120.1°
CAOCAPCAQH24120.0°120.0°
CAOCAPCAQOAS38.7°0.0°
CAOCAPCAQNAR145.9°179.9°
CAOCAPH23H24119.9°120.0°
CAPCAOH25H26118.0°120.0°
CAPCAOCANH27179.4°60.0°
CAPCAOCANH2858.5°60.1°
CAPCAQOASNAR175.8°179.9°
CAPCAQNARCBH6.3°180.0°
CAPCAQNARH22173.7°0.1°
CAQCAPH23H24120.0°119.9°
CAQCAPCAOH2514.4°60.0°
CAQCAPCAOH26104.3°60.0°
OASCAQNARCBH177.9°0.1°
OASCAQNARH222.1°180.0°
OASCAQCAPH23158.7°120.1°
OASCAQCAPH2481.4°120.0°
CAQNARCBHCAT162.3°180.0°
CAQNARCBHH22180.0°179.9°
CAQNARCBHH2042.7°60.0°
CAQNARCBHH2178.3°60.0°
NARCAQCAPH2325.9°60.0°
NARCAQCAPH2494.1°59.9°
CBHCATCAYH19117.4°120.2°
CATCBHNARH20119.5°120.0°
CATCBHNARH21119.5°120.0°
CBHCATCAYCAX179.7°62.2°
CBHCATCAYH1359.6°57.8°
CBHCATCAYH1460.3°177.8°
CBHCATCAUH17102.9°177.8°
CBHCATCAUH1816.9°57.7°
CATCBHH20H21121.5°120.0°
CATCBHNARH2217.8°0.0°
CAYCATCBHNAR169.7°65.4°
CATCAYCAXH13120.0°119.9°
CATCAYCAXH14120.1°120.0°
CATCAYCAXH11159.1°60.9°
CATCAYCAXH1281.4°179.2°
CATCAYH13H14119.8°120.0°
CAYCATCAUH17133.3°62.4°
CAYCATCAUH18106.9°177.6°
CAYCATCBHH2070.8°174.7°
CAYCATCBHH2150.2°54.6°
NARCBHCATH1952.4°54.8°
NARCBHH20H21121.5°120.0°
CAYCAXH11H12119.2°119.9°
CAXCAYH13H14119.9°120.1°
CAXCAYCATH1962.3°177.6°
H1CBGH2H3120.0°120.0°
H5CBDCBEH61.2°0.0°
H6CBECBFH71.6°0.1°
H11CAXCAYH1380.9°59.1°
H11CAXCAYH1439.1°179.2°
H12CAXCAYH1338.6°60.9°
H12CAXCAYH14158.5°59.2°
H13CAYCATH1957.8°62.4°
H14CAYCATH19177.7°57.6°
H15CAVCAUH17164.4°59.2°
H15CAVCAUH1844.5°60.8°
H16CAVCAUH1744.4°179.1°
H16CAVCAUH1875.5°59.1°
H17CAUCATH1914.0°57.6°
H18CAUCATH19133.8°62.4°
H19CATCBHH20171.9°65.1°
H19CATCBHH2167.1°174.8°
H20CBHNARH22137.3°120.1°
H21CBHNARH22101.7°120.0°
H23CAPCAOH25134.4°180.0°
H23CAPCAOH2615.7°60.0°
H24CAPCAOH25105.7°60.0°
H24CAPCAOH26135.6°180.0°
H25CAOCANH2760.0°179.9°
H25CAOCANH28179.1°60.0°
H26CAOCANH2758.7°60.0°
H26CAOCANH2862.2°179.9°
H29CACCADH301.0°0.0°
H30CADCAEH310.8°0.0°
H31CAECAFH321.8°0.0°
H33CAKH34H35120.0°120.0°

223532

PDB entries from 2024-08-07

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