5CM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| N1 | C6 | sing | 1.36Å | 1.36Å | |
| N1 | C1' | sing | 1.46Å | 1.47Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| N3 | C4 | doub | 1.33Å | 1.32Å | |
| C4 | C5 | sing | 1.41Å | 1.44Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C5 | C5A | sing | 1.51Å | 1.49Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5A | H5A1 | sing | 1.09Å | 1.11Å | |
| C5A | H5A2 | sing | 1.09Å | 1.12Å | |
| C5A | H5A3 | sing | 1.09Å | 1.11Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| N4 | HN41 | sing | 0.97Å | 1.02Å | |
| N4 | HN42 | sing | 0.97Å | 1.02Å | |
| C1' | C2' | sing | 1.54Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C2' | H2'' | sing | 1.09Å | 1.12Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| O5' | P | sing | 1.61Å | 1.58Å | |
| P | OP1 | doub | 1.48Å | 1.51Å | |
| P | OP2 | sing | 1.61Å | 1.50Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 120.1° | 120.4° |
| C2 | N1 | C1' | 119.0° | 119.8° |
| N1 | C2 | N3 | 119.7° | 121.1° |
| N1 | C2 | O2 | 118.6° | 119.5° |
| C6 | N1 | C1' | 120.8° | 119.8° |
| N1 | C6 | C5 | 120.7° | 119.3° |
| N1 | C6 | H6 | 120.6° | 120.4° |
| N1 | C1' | C2' | 104.3° | 109.9° |
| N1 | C1' | O4' | 108.8° | 109.9° |
| N1 | C1' | H1' | 112.6° | 109.9° |
| N3 | C2 | O2 | 121.7° | 119.5° |
| C2 | N3 | C4 | 119.8° | 120.7° |
| N3 | C4 | C5 | 121.8° | 119.6° |
| N3 | C4 | N4 | 117.6° | 120.2° |
| C5 | C4 | N4 | 120.5° | 120.2° |
| C4 | C5 | C5A | 119.3° | 120.5° |
| C4 | C5 | C6 | 117.8° | 119.0° |
| C4 | N4 | HN41 | 117.6° | 120.0° |
| C4 | N4 | HN42 | 109.3° | 120.0° |
| C5A | C5 | C6 | 122.9° | 120.5° |
| C5 | C5A | H5A1 | 119.3° | 109.5° |
| C5 | C5A | H5A2 | 108.6° | 109.5° |
| C5 | C5A | H5A3 | 108.6° | 109.5° |
| C5 | C6 | H6 | 118.7° | 120.4° |
| H5A1 | C5A | H5A2 | 108.7° | 109.5° |
| H5A1 | C5A | H5A3 | 108.7° | 109.5° |
| H5A2 | C5A | H5A3 | 101.4° | 109.5° |
| HN41 | N4 | HN42 | 109.3° | 120.0° |
| C2' | C1' | O4' | 107.5° | 107.4° |
| C2' | C1' | H1' | 113.7° | 109.8° |
| C1' | C2' | C3' | 106.3° | 104.2° |
| C1' | C2' | H2' | 113.4° | 110.5° |
| C1' | C2' | H2'' | 113.4° | 110.5° |
| O4' | C1' | H1' | 109.6° | 109.9° |
| C1' | O4' | C4' | 111.5° | 106.9° |
| C3' | C2' | H2' | 113.4° | 110.4° |
| C3' | C2' | H2'' | 113.4° | 110.5° |
| C2' | C3' | C4' | 106.7° | 102.1° |
| C2' | C3' | O3' | 109.2° | 110.9° |
| C2' | C3' | H3' | 115.7° | 110.9° |
| H2' | C2' | H2'' | 97.1° | 110.5° |
| C4' | C3' | O3' | 119.7° | 110.9° |
| C4' | C3' | H3' | 104.3° | 110.9° |
| C3' | C4' | O4' | 105.1° | 103.6° |
| C3' | C4' | C5' | 109.7° | 110.7° |
| C3' | C4' | H4' | 111.0° | 110.6° |
| O3' | C3' | H3' | 101.5° | 110.8° |
| C3' | O3' | HO3' | 109.2° | 106.8° |
| O4' | C4' | C5' | 105.6° | 110.8° |
| O4' | C4' | H4' | 114.7° | 110.5° |
| C5' | C4' | H4' | 110.4° | 110.5° |
| C4' | C5' | O5' | 109.1° | 109.6° |
| C4' | C5' | H5' | 112.3° | 109.5° |
| C4' | C5' | H5'' | 112.3° | 109.4° |
| O5' | C5' | H5' | 112.3° | 109.5° |
| O5' | C5' | H5'' | 112.4° | 109.4° |
| C5' | O5' | P | 120.9° | 106.8° |
| H5' | C5' | H5'' | 98.1° | 109.4° |
| O5' | P | OP1 | 106.6° | 109.5° |
| O5' | P | OP2 | 110.6° | 109.5° |
| O5' | P | OP3 | 101.7° | 109.5° |
| OP1 | P | OP2 | 119.4° | 109.5° |
| OP1 | P | OP3 | 110.9° | 109.5° |
| OP2 | P | OP3 | 106.2° | 109.4° |
| P | OP2 | HOP2 | 110.6° | 106.8° |
| P | OP3 | HOP3 | 101.7° | 106.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 176.5° | 179.9° |
| N1 | C2 | N3 | O2 | 179.8° | 180.0° |
| N1 | C2 | N3 | C4 | 0.9° | 0.3° |
| C2 | N1 | C6 | C5 | 4.2° | 0.0° |
| C2 | N1 | C6 | H6 | 175.9° | 180.0° |
| C2 | N1 | C1' | C2' | 116.7° | 59.7° |
| C2 | N1 | C1' | O4' | 128.8° | 58.3° |
| C2 | N1 | C1' | H1' | 7.0° | 179.4° |
| C6 | N1 | C2 | N3 | 3.5° | 0.0° |
| C6 | N1 | C2 | O2 | 176.6° | 179.9° |
| N1 | C6 | C5 | C4 | 2.2° | 0.2° |
| N1 | C6 | C5 | C5A | 177.0° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C1' | C2' | 59.8° | 120.2° |
| C6 | N1 | C1' | O4' | 54.7° | 121.7° |
| C6 | N1 | C1' | H1' | 176.4° | 0.7° |
| C1' | N1 | C2 | N3 | 173.0° | 180.0° |
| C1' | N1 | C2 | O2 | 6.8° | 0.0° |
| C1' | N1 | C6 | C5 | 172.3° | 180.0° |
| C1' | N1 | C6 | H6 | 7.7° | 0.1° |
| N1 | C1' | C2' | O4' | 115.4° | 119.5° |
| N1 | C1' | C2' | H1' | 123.0° | 120.9° |
| N1 | C1' | O4' | H1' | 123.5° | 121.0° |
| N1 | C1' | C2' | C3' | 121.4° | 121.5° |
| N1 | C1' | C2' | H2' | 113.3° | 119.9° |
| N1 | C1' | C2' | H2'' | 3.9° | 2.8° |
| N1 | C1' | O4' | C4' | 127.4° | 145.8° |
| C2 | N3 | C4 | C5 | 1.0° | 0.5° |
| C2 | N3 | C4 | N4 | 178.6° | 180.0° |
| O2 | C2 | N3 | C4 | 179.2° | 179.7° |
| N3 | C4 | C5 | N4 | 179.7° | 179.4° |
| N3 | C4 | C5 | C5A | 179.6° | 179.7° |
| N3 | C4 | C5 | C6 | 0.4° | 0.5° |
| N3 | C4 | N4 | HN41 | 180.0° | 0.1° |
| N3 | C4 | N4 | HN42 | 54.7° | 180.0° |
| C4 | C5 | C5A | C6 | 179.2° | 179.8° |
| C4 | C5 | C5A | H5A1 | 180.0° | 0.3° |
| C4 | C5 | C5A | H5A2 | 54.7° | 119.7° |
| C4 | C5 | C5A | H5A3 | 54.7° | 120.3° |
| C4 | C5 | C6 | H6 | 177.8° | 179.8° |
| C5 | C4 | N4 | HN41 | 0.3° | 179.5° |
| C5 | C4 | N4 | HN42 | 125.6° | 0.6° |
| N4 | C4 | C5 | C5A | 0.0° | 0.3° |
| N4 | C4 | C5 | C6 | 179.2° | 179.9° |
| C4 | N4 | HN41 | HN42 | 125.3° | 179.9° |
| C5 | C5A | H5A1 | H5A2 | 125.2° | 120.0° |
| C5 | C5A | H5A1 | H5A3 | 125.2° | 120.0° |
| C5 | C5A | H5A2 | H5A3 | 114.3° | 120.0° |
| C5A | C5 | C6 | H6 | 3.0° | 0.0° |
| C6 | C5 | C5A | H5A1 | 0.8° | 180.0° |
| C6 | C5 | C5A | H5A2 | 124.4° | 60.0° |
| C6 | C5 | C5A | H5A3 | 126.1° | 60.0° |
| H5A1 | C5A | H5A2 | H5A3 | 114.4° | 120.0° |
| C2' | C1' | O4' | H1' | 124.1° | 119.5° |
| C1' | C2' | C3' | H2' | 125.2° | 118.7° |
| C1' | C2' | C3' | H2'' | 125.3° | 118.7° |
| C1' | C2' | H2' | H2'' | 119.3° | 122.7° |
| C1' | C2' | C3' | C4' | 4.4° | 20.9° |
| C1' | C2' | C3' | O3' | 135.1° | 139.2° |
| C1' | C2' | C3' | H3' | 111.1° | 97.3° |
| C2' | C1' | O4' | C4' | 15.0° | 26.3° |
| O4' | C1' | C2' | C3' | 6.0° | 2.0° |
| O4' | C1' | C2' | H2' | 131.2° | 120.6° |
| O4' | C1' | C2' | H2'' | 119.3° | 116.8° |
| C1' | O4' | C4' | C3' | 17.5° | 39.9° |
| C1' | O4' | C4' | C5' | 133.5° | 158.6° |
| C1' | O4' | C4' | H4' | 104.6° | 78.7° |
| H1' | C1' | C2' | C3' | 115.6° | 117.6° |
| H1' | C1' | C2' | H2' | 9.7° | 1.1° |
| H1' | C1' | C2' | H2'' | 119.1° | 123.7° |
| H1' | C1' | O4' | C4' | 109.1° | 93.2° |
| C3' | C2' | H2' | H2'' | 119.3° | 122.6° |
| C2' | C3' | C4' | O3' | 124.5° | 118.2° |
| C2' | C3' | C4' | H3' | 123.0° | 118.2° |
| C2' | C3' | O3' | H3' | 122.7° | 123.6° |
| C2' | C3' | C4' | O4' | 12.9° | 36.9° |
| C2' | C3' | C4' | C5' | 126.0° | 155.7° |
| C2' | C3' | C4' | H4' | 111.6° | 81.5° |
| C2' | C3' | O3' | HO3' | 179.9° | 61.4° |
| H2' | C2' | C3' | C4' | 120.8° | 97.8° |
| H2' | C2' | C3' | O3' | 9.9° | 20.5° |
| H2' | C2' | C3' | H3' | 123.6° | 144.0° |
| H2'' | C2' | C3' | C4' | 129.7° | 139.6° |
| H2'' | C2' | C3' | O3' | 99.6° | 102.1° |
| H2'' | C2' | C3' | H3' | 14.1° | 21.4° |
| C4' | C3' | O3' | H3' | 114.0° | 123.6° |
| C3' | C4' | O4' | C5' | 116.0° | 118.7° |
| C3' | C4' | O4' | H4' | 122.1° | 118.5° |
| C3' | C4' | C5' | H4' | 122.6° | 122.9° |
| C4' | C3' | O3' | HO3' | 56.7° | 174.2° |
| C3' | C4' | C5' | O5' | 33.5° | 180.0° |
| C3' | C4' | C5' | H5' | 158.7° | 59.9° |
| C3' | C4' | C5' | H5'' | 91.8° | 60.0° |
| O3' | C3' | C4' | O4' | 137.4° | 155.2° |
| O3' | C3' | C4' | C5' | 109.4° | 86.1° |
| O3' | C3' | C4' | H4' | 12.9° | 36.8° |
| H3' | C3' | C4' | O4' | 110.1° | 81.3° |
| H3' | C3' | C4' | C5' | 3.0° | 37.5° |
| H3' | C3' | C4' | H4' | 125.3° | 160.3° |
| H3' | C3' | O3' | HO3' | 57.2° | 62.2° |
| O4' | C4' | C5' | H4' | 124.6° | 122.8° |
| O4' | C4' | C5' | O5' | 79.4° | 65.7° |
| O4' | C4' | C5' | H5' | 45.9° | 174.2° |
| O4' | C4' | C5' | H5'' | 155.4° | 54.3° |
| C4' | C5' | O5' | H5' | 125.2° | 120.1° |
| C4' | C5' | O5' | H5'' | 125.2° | 120.0° |
| C4' | C5' | H5' | H5'' | 118.2° | 119.9° |
| C4' | C5' | O5' | P | 175.3° | 180.0° |
| H4' | C4' | C5' | O5' | 156.1° | 57.1° |
| H4' | C4' | C5' | H5' | 78.7° | 63.0° |
| H4' | C4' | C5' | H5'' | 30.8° | 177.1° |
| O5' | C5' | H5' | H5'' | 118.3° | 119.9° |
| C5' | O5' | P | OP1 | 170.9° | 60.0° |
| C5' | O5' | P | OP2 | 57.8° | 180.0° |
| C5' | O5' | P | OP3 | 54.7° | 60.0° |
| H5' | C5' | O5' | P | 59.4° | 60.0° |
| H5'' | C5' | O5' | P | 50.1° | 60.0° |
| O5' | P | OP1 | OP2 | 126.2° | 120.0° |
| O5' | P | OP1 | OP3 | 109.9° | 120.0° |
| O5' | P | OP2 | OP3 | 109.6° | 120.0° |
| O5' | P | OP2 | HOP2 | 180.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 180.0° | 59.9° |
| OP1 | P | OP2 | OP3 | 126.2° | 120.0° |
| OP1 | P | OP2 | HOP2 | 55.7° | 60.0° |
| OP1 | P | OP3 | HOP3 | 66.9° | 180.0° |
| OP2 | P | OP3 | HOP3 | 64.3° | 60.0° |
| OP3 | P | OP2 | HOP2 | 70.5° | 60.0° |
