5CG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CL5' | C5' | sing | 1.80Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.42Å | |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| C6 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C2 | sing | 1.36Å | 1.37Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.34Å | |
| C2 | N3 | doub | 1.31Å | 1.33Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| N2 | HN22 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CL5' | C5' | C4' | 113.1° | 109.4° |
| CL5' | C5' | H5' | 107.4° | 109.5° |
| CL5' | C5' | H5'' | 108.3° | 109.5° |
| C4' | C5' | H5' | 107.5° | 109.4° |
| C4' | C5' | H5'' | 108.2° | 109.5° |
| C5' | C4' | O4' | 108.6° | 110.4° |
| C5' | C4' | C3' | 111.7° | 110.5° |
| C5' | C4' | H4' | 107.5° | 110.4° |
| H5' | C5' | H5'' | 112.4° | 109.5° |
| O4' | C4' | C3' | 106.2° | 104.8° |
| O4' | C4' | H4' | 113.0° | 110.4° |
| C4' | O4' | C1' | 110.0° | 105.3° |
| C3' | C4' | H4' | 109.9° | 110.3° |
| C4' | C3' | O3' | 113.1° | 110.5° |
| C4' | C3' | C2' | 106.1° | 104.1° |
| C4' | C3' | H3' | 111.9° | 110.5° |
| O4' | C1' | C2' | 110.1° | 104.9° |
| O4' | C1' | N9 | 109.5° | 110.4° |
| O4' | C1' | H1' | 114.6° | 110.4° |
| O3' | C3' | C2' | 116.2° | 110.5° |
| O3' | C3' | H3' | 100.9° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C2' | C3' | H3' | 108.6° | 110.6° |
| C3' | C2' | O2' | 110.2° | 110.5° |
| C3' | C2' | C1' | 101.8° | 103.9° |
| C3' | C2' | H2' | 113.4° | 110.5° |
| O2' | C2' | C1' | 108.0° | 110.8° |
| O2' | C2' | H2' | 107.8° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2' | 115.5° | 110.4° |
| C2' | C1' | N9 | 121.6° | 110.4° |
| C2' | C1' | H1' | 99.8° | 110.4° |
| N9 | C1' | H1' | 100.6° | 110.3° |
| C1' | N9 | C8 | 125.1° | 126.3° |
| C1' | N9 | C4 | 128.7° | 126.2° |
| C8 | N9 | C4 | 106.2° | 107.5° |
| N9 | C8 | N7 | 113.4° | 109.8° |
| N9 | C8 | H8 | 123.3° | 125.0° |
| N9 | C4 | C5 | 105.2° | 106.1° |
| N9 | C4 | N3 | 126.4° | 134.2° |
| N7 | C8 | H8 | 123.3° | 125.1° |
| C8 | N7 | C5 | 104.3° | 109.4° |
| N7 | C5 | C6 | 130.1° | 134.1° |
| N7 | C5 | C4 | 110.9° | 107.3° |
| C6 | C5 | C4 | 119.0° | 118.6° |
| C5 | C6 | O6 | 128.4° | 120.9° |
| C5 | C6 | N1 | 111.6° | 118.3° |
| C5 | C4 | N3 | 128.4° | 119.7° |
| O6 | C6 | N1 | 120.0° | 120.8° |
| C6 | N1 | C2 | 125.0° | 120.3° |
| C6 | N1 | HN1 | 117.5° | 119.8° |
| C2 | N1 | HN1 | 117.5° | 119.9° |
| N1 | C2 | N2 | 115.9° | 119.0° |
| N1 | C2 | N3 | 124.1° | 121.9° |
| N2 | C2 | N3 | 120.0° | 119.1° |
| C2 | N2 | HN21 | 125.3° | 120.0° |
| C2 | N2 | HN22 | 109.3° | 120.0° |
| C2 | N3 | C4 | 111.9° | 121.1° |
| HN21 | N2 | HN22 | 125.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CL5' | C5' | C4' | H5' | 118.4° | 120.0° |
| CL5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| CL5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| CL5' | C5' | C4' | O4' | 155.4° | 66.5° |
| CL5' | C5' | C4' | C3' | 38.6° | 178.1° |
| CL5' | C5' | C4' | H4' | 82.1° | 55.8° |
| C4' | C5' | H5' | H5'' | 119.0° | 120.0° |
| C5' | C4' | O4' | C3' | 120.3° | 118.9° |
| C5' | C4' | O4' | H4' | 119.2° | 122.3° |
| C5' | C4' | C3' | H4' | 119.2° | 122.4° |
| C5' | C4' | O4' | C1' | 111.1° | 159.4° |
| C5' | C4' | C3' | O3' | 134.3° | 98.4° |
| C5' | C4' | C3' | C2' | 97.1° | 142.9° |
| C5' | C4' | C3' | H3' | 21.2° | 24.1° |
| H5' | C5' | C4' | O4' | 37.0° | 173.5° |
| H5' | C5' | C4' | C3' | 79.8° | 58.1° |
| H5' | C5' | C4' | H4' | 159.5° | 64.2° |
| H5'' | C5' | C4' | O4' | 84.6° | 53.5° |
| H5'' | C5' | C4' | C3' | 158.6° | 61.9° |
| H5'' | C5' | C4' | H4' | 37.9° | 175.8° |
| O4' | C4' | C3' | H4' | 122.5° | 118.8° |
| O4' | C4' | C3' | O3' | 107.4° | 142.8° |
| O4' | C4' | C3' | C2' | 21.1° | 24.1° |
| O4' | C4' | C3' | H3' | 139.4° | 94.7° |
| C4' | O4' | C1' | C2' | 6.4° | 40.5° |
| C4' | O4' | C1' | N9 | 142.7° | 159.3° |
| C4' | O4' | C1' | H1' | 105.2° | 78.4° |
| C3' | C4' | O4' | C1' | 9.2° | 40.5° |
| C4' | C3' | O3' | C2' | 123.1° | 114.7° |
| C4' | C3' | O3' | H3' | 119.7° | 122.6° |
| C4' | C3' | C2' | H3' | 120.5° | 118.7° |
| C4' | C3' | O3' | HO3' | 134.6° | 61.5° |
| C4' | C3' | C2' | O2' | 138.1° | 118.7° |
| C4' | C3' | C2' | C1' | 23.7° | 0.1° |
| C4' | C3' | C2' | H2' | 101.0° | 118.6° |
| H4' | C4' | O4' | C1' | 129.8° | 78.2° |
| H4' | C4' | C3' | O3' | 15.1° | 24.0° |
| H4' | C4' | C3' | C2' | 143.6° | 94.7° |
| H4' | C4' | C3' | H3' | 98.1° | 146.5° |
| O4' | C1' | C2' | C3' | 19.0° | 23.9° |
| O4' | C1' | C2' | O2' | 135.0° | 142.6° |
| O4' | C1' | C2' | N9 | 130.1° | 118.8° |
| O4' | C1' | C2' | H1' | 120.9° | 118.9° |
| O4' | C1' | C2' | H2' | 104.3° | 94.7° |
| O4' | C1' | N9 | H1' | 121.1° | 122.2° |
| O4' | C1' | N9 | C8 | 78.7° | 22.0° |
| O4' | C1' | N9 | C4 | 102.5° | 158.0° |
| O3' | C3' | C2' | H3' | 112.8° | 122.6° |
| O3' | C3' | C2' | O2' | 11.4° | 0.1° |
| O3' | C3' | C2' | C1' | 103.0° | 118.8° |
| O3' | C3' | C2' | H2' | 132.3° | 122.7° |
| C2' | C3' | O3' | HO3' | 11.5° | 176.2° |
| C3' | C2' | O2' | C1' | 110.4° | 114.6° |
| C3' | C2' | O2' | H2' | 124.2° | 122.6° |
| C3' | C2' | C1' | H2' | 123.3° | 118.5° |
| C3' | C2' | O2' | HO2' | 172.8° | 61.5° |
| C3' | C2' | C1' | N9 | 149.0° | 142.7° |
| C3' | C2' | C1' | H1' | 102.0° | 95.0° |
| H3' | C3' | O3' | HO3' | 105.7° | 61.1° |
| H3' | C3' | C2' | O2' | 101.4° | 122.5° |
| H3' | C3' | C2' | C1' | 144.2° | 118.6° |
| H3' | C3' | C2' | H2' | 19.5° | 0.1° |
| O2' | C2' | C1' | H2' | 120.7° | 122.8° |
| O2' | C2' | C1' | N9 | 94.9° | 98.6° |
| O2' | C2' | C1' | H1' | 14.1° | 23.7° |
| C1' | C2' | O2' | HO2' | 76.9° | 176.1° |
| C2' | C1' | N9 | H1' | 108.6° | 122.3° |
| C2' | C1' | N9 | C8 | 150.9° | 93.4° |
| C2' | C1' | N9 | C4 | 27.9° | 86.6° |
| H2' | C2' | O2' | HO2' | 48.5° | 61.1° |
| H2' | C2' | C1' | N9 | 25.7° | 24.2° |
| H2' | C2' | C1' | H1' | 134.7° | 146.5° |
| C1' | N9 | C8 | C4 | 179.0° | 180.0° |
| C1' | N9 | C8 | N7 | 178.6° | 180.0° |
| C1' | N9 | C8 | H8 | 1.4° | 0.0° |
| C1' | N9 | C4 | C5 | 178.4° | 180.0° |
| C1' | N9 | C4 | N3 | 1.2° | 0.0° |
| H1' | C1' | N9 | C8 | 42.3° | 144.3° |
| H1' | C1' | N9 | C4 | 136.5° | 35.8° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.1° | 0.1° |
| C8 | N9 | C4 | C5 | 0.6° | 0.0° |
| C8 | N9 | C4 | N3 | 179.8° | 180.0° |
| C4 | N9 | C8 | N7 | 0.4° | 0.1° |
| C4 | N9 | C8 | H8 | 179.5° | 180.0° |
| N9 | C4 | C5 | N7 | 0.5° | 0.0° |
| N9 | C4 | C5 | C6 | 179.5° | 180.0° |
| N9 | C4 | C5 | N3 | 179.6° | 180.0° |
| N9 | C4 | N3 | C2 | 179.4° | 180.0° |
| C8 | N7 | C5 | C6 | 179.8° | 180.0° |
| C8 | N7 | C5 | C4 | 0.3° | 0.0° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C6 | C4 | 179.9° | 180.0° |
| N7 | C5 | C6 | O6 | 0.3° | 0.0° |
| N7 | C5 | C6 | N1 | 179.9° | 179.8° |
| N7 | C5 | C4 | N3 | 179.8° | 180.0° |
| C5 | C6 | O6 | N1 | 179.8° | 179.7° |
| C5 | C6 | N1 | C2 | 0.0° | 0.5° |
| C5 | C6 | N1 | HN1 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.0° |
| C4 | C5 | C6 | O6 | 179.8° | 180.0° |
| C4 | C5 | C6 | N1 | 0.0° | 0.3° |
| C5 | C4 | N3 | C2 | 0.2° | 0.1° |
| O6 | C6 | N1 | C2 | 179.9° | 179.8° |
| O6 | C6 | N1 | HN1 | 0.1° | 0.2° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.5° |
| C6 | N1 | C2 | N2 | 179.8° | 179.7° |
| C6 | N1 | C2 | N3 | 0.1° | 0.5° |
| N1 | C2 | N2 | N3 | 179.9° | 179.8° |
| N1 | C2 | N2 | HN21 | 0.0° | 179.7° |
| N1 | C2 | N2 | HN22 | 180.0° | 0.5° |
| N1 | C2 | N3 | C4 | 0.2° | 0.2° |
| HN1 | N1 | C2 | N2 | 0.2° | 0.2° |
| HN1 | N1 | C2 | N3 | 179.9° | 180.0° |
| C2 | N2 | HN21 | HN22 | 180.0° | 179.8° |
| N2 | C2 | N3 | C4 | 179.7° | 180.0° |
| N3 | C2 | N2 | HN21 | 179.9° | 0.1° |
| N3 | C2 | N2 | HN22 | 0.1° | 179.7° |
