5CF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP3	sing	1.61Å	1.59Å
OP3	HOP3	sing	0.97Å	0.95Å
OP2	P	doub	1.48Å	1.46Å
OP1	P	sing	1.61Å	1.48Å
P	O5'	sing	1.61Å	1.57Å
C6	N1	sing	1.36Å	1.36Å
C1'	N1	sing	1.46Å	1.46Å
N1	C2	sing	1.35Å	1.41Å
C2	N3	sing	1.33Å	1.36Å
C2	O2	doub	1.22Å	1.25Å
C4	N3	doub	1.33Å	1.31Å
C5	C4	sing	1.41Å	1.44Å
C4	N4	sing	1.38Å	1.35Å
N4	HN4	sing	0.97Å	1.00Å
N4	HN4A	sing	0.97Å	1.00Å
F5	C5	sing	1.35Å	1.34Å
C6	C5	doub	1.36Å	1.33Å
C6	H6	sing	1.08Å	1.08Å
C2'	C1'	sing	1.55Å	1.50Å
O4'	C1'	sing	1.44Å	1.41Å
C1'	H1'	sing	1.09Å	1.10Å
C3'	C2'	sing	1.55Å	1.50Å
C2'	O2'	sing	1.43Å	1.39Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
O3'	C3'	sing	1.43Å	1.36Å
C3'	C4'	sing	1.54Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.51Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	H4'	sing	1.09Å	1.10Å
O5'	C5'	sing	1.43Å	1.43Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
OP1	HOP1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	OP3	HOP3	109.5°	114.0°
OP3	P	OP2	106.0°	109.5°
OP3	P	OP1	108.9°	109.5°
OP3	P	O5'	105.8°	109.5°
OP2	P	OP1	120.9°	109.5°
OP2	P	O5'	110.6°	109.5°
OP1	P	O5'	103.7°	109.5°
P	OP1	HOP1	109.5°	114.0°
P	O5'	C5'	121.3°	123.0°
C6	N1	C1'	120.1°	119.8°
C6	N1	C2	121.2°	120.3°
N1	C6	C5	120.3°	119.2°
N1	C6	H6	119.9°	120.4°
C1'	N1	C2	118.7°	119.9°
N1	C1'	C2'	114.3°	110.6°
N1	C1'	O4'	110.2°	110.6°
N1	C1'	H1'	104.9°	110.6°
N1	C2	N3	116.4°	121.1°
N1	C2	O2	119.0°	119.4°
N3	C2	O2	124.6°	119.4°
C2	N3	C4	124.3°	120.7°
N3	C4	C5	118.1°	119.6°
N3	C4	N4	120.5°	120.2°
C5	C4	N4	121.5°	120.2°
C4	C5	F5	119.2°	120.5°
C4	C5	C6	119.8°	118.9°
C4	N4	HN4	120.0°	120.0°
C4	N4	HN4A	120.0°	120.0°
HN4	N4	HN4A	120.0°	120.0°
F5	C5	C6	120.2°	120.5°
C5	C6	H6	119.9°	120.4°
C2'	C1'	O4'	107.0°	103.6°
C2'	C1'	H1'	108.2°	110.6°
C1'	C2'	C3'	99.2°	102.1°
C1'	C2'	O2'	108.8°	110.9°
C1'	C2'	H2'	118.4°	110.9°
O4'	C1'	H1'	112.4°	110.6°
C1'	O4'	C4'	107.7°	106.9°
C3'	C2'	O2'	115.2°	110.9°
C3'	C2'	H2'	112.4°	110.9°
C2'	C3'	O3'	110.3°	110.5°
C2'	C3'	C4'	98.6°	104.2°
C2'	C3'	H3'	117.1°	110.4°
O2'	C2'	H2'	103.4°	110.8°
C2'	O2'	HO2'	109.5°	114.0°
O3'	C3'	C4'	113.1°	110.5°
O3'	C3'	H3'	103.6°	110.5°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	114.5°	110.5°
C3'	C4'	C5'	115.1°	109.9°
C3'	C4'	O4'	103.3°	107.4°
C3'	C4'	H4'	109.4°	109.9°
C5'	C4'	O4'	107.8°	110.0°
C5'	C4'	H4'	105.1°	110.0°
C4'	C5'	O5'	112.4°	109.5°
C4'	C5'	H5'	108.5°	109.5°
C4'	C5'	H5'A	108.5°	109.4°
O4'	C4'	H4'	116.5°	109.7°
O5'	C5'	H5'	108.5°	109.5°
O5'	C5'	H5'A	108.5°	109.5°
H5'	C5'	H5'A	110.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP2	OP1	124.4°	120.0°
OP3	P	OP2	O5'	114.3°	120.0°
OP3	P	OP1	O5'	112.3°	120.0°
OP3	P	O5'	C5'	65.6°	175.0°
OP3	P	OP1	HOP1	123.0°	60.0°
HOP3	OP3	P	OP2	0.0°	59.9°
HOP3	OP3	P	OP1	131.6°	60.1°
HOP3	OP3	P	O5'	117.5°	180.0°
OP2	P	OP1	O5'	124.6°	120.0°
OP2	P	O5'	C5'	48.8°	55.0°
OP2	P	OP1	HOP1	0.0°	180.0°
OP1	P	O5'	C5'	179.9°	65.0°
P	O5'	C5'	C4'	171.4°	180.0°
P	O5'	C5'	H5'	51.4°	60.0°
P	O5'	C5'	H5'A	68.7°	60.0°
O5'	P	OP1	HOP1	124.6°	60.0°
C6	N1	C1'	C2	179.8°	179.7°
C6	N1	C2	N3	1.4°	0.0°
C6	N1	C2	O2	177.9°	180.0°
N1	C6	C5	C4	2.3°	0.0°
N1	C6	C5	F5	171.7°	180.0°
N1	C6	C5	H6	180.0°	179.9°
C6	N1	C1'	C2'	100.9°	116.9°
C6	N1	C1'	O4'	19.6°	128.8°
C6	N1	C1'	H1'	140.8°	6.0°
C1'	N1	C2	N3	178.3°	179.7°
C1'	N1	C2	O2	2.3°	0.3°
C1'	N1	C6	C5	177.3°	179.7°
C1'	N1	C6	H6	2.7°	0.2°
N1	C1'	C2'	O4'	122.3°	118.6°
N1	C1'	C2'	H1'	116.4°	122.9°
N1	C1'	O4'	H1'	116.6°	122.9°
N1	C1'	C2'	C3'	87.6°	155.5°
N1	C1'	C2'	O2'	151.6°	86.3°
N1	C1'	C2'	H2'	34.1°	37.3°
N1	C1'	O4'	C4'	117.7°	158.4°
N1	C2	N3	O2	179.3°	180.0°
N1	C2	N3	C4	0.2°	0.0°
C2	N1	C6	C5	2.5°	0.0°
C2	N1	C6	H6	177.5°	179.9°
C2	N1	C1'	C2'	79.3°	62.8°
C2	N1	C1'	O4'	160.2°	51.5°
C2	N1	C1'	H1'	39.0°	174.3°
C2	N3	C4	C5	0.0°	0.0°
C2	N3	C4	N4	179.4°	179.9°
O2	C2	N3	C4	179.1°	180.0°
N3	C4	C5	N4	179.3°	179.9°
N3	C4	N4	HN4	0.0°	0.1°
N3	C4	N4	HN4A	180.0°	180.0°
N3	C4	C5	F5	170.6°	180.0°
N3	C4	C5	C6	1.0°	0.0°
C5	C4	N4	HN4	179.3°	180.0°
C5	C4	N4	HN4A	0.7°	0.1°
C4	C5	F5	C6	169.5°	180.0°
C4	C5	C6	H6	177.7°	179.9°
C4	N4	HN4	HN4A	180.0°	179.8°
N4	C4	C5	F5	10.0°	0.0°
N4	C4	C5	C6	179.6°	179.9°
F5	C5	C6	H6	8.3°	0.0°
C2'	C1'	O4'	H1'	118.6°	118.5°
C1'	C2'	C3'	O2'	116.0°	118.2°
C1'	C2'	C3'	H2'	126.0°	118.2°
C1'	C2'	O2'	H2'	126.6°	123.6°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C1'	C2'	C3'	O3'	165.1°	97.9°
C1'	C2'	C3'	C4'	46.4°	20.9°
C1'	C2'	C3'	H3'	76.8°	139.6°
C2'	C1'	O4'	C4'	7.1°	39.8°
O4'	C1'	C2'	C3'	34.7°	36.9°
O4'	C1'	C2'	O2'	86.1°	155.1°
O4'	C1'	C2'	H2'	156.4°	81.3°
C1'	O4'	C4'	C3'	23.3°	26.2°
C1'	O4'	C4'	C5'	145.6°	145.8°
C1'	O4'	C4'	H4'	96.7°	93.1°
H1'	C1'	C2'	C3'	156.0°	81.6°
H1'	C1'	C2'	O2'	35.2°	36.6°
H1'	C1'	C2'	H2'	82.3°	160.2°
H1'	C1'	O4'	C4'	125.7°	78.7°
C3'	C2'	O2'	H2'	123.0°	123.7°
C3'	C2'	O2'	HO2'	69.6°	67.3°
C2'	C3'	O3'	C4'	109.3°	114.8°
C2'	C3'	O3'	H3'	126.1°	122.5°
C2'	C3'	C4'	H3'	125.1°	118.6°
C2'	C3'	O3'	HO3'	180.0°	61.4°
C2'	C3'	C4'	C5'	161.3°	121.5°
C2'	C3'	C4'	O4'	44.1°	1.9°
C2'	C3'	C4'	H4'	80.7°	117.4°
O2'	C2'	C3'	O3'	49.1°	20.3°
O2'	C2'	C3'	C4'	69.6°	139.1°
O2'	C2'	C3'	H3'	167.2°	102.2°
H2'	C2'	O2'	HO2'	53.4°	56.4°
H2'	C2'	C3'	O3'	69.0°	144.0°
H2'	C2'	C3'	C4'	172.4°	97.3°
H2'	C2'	C3'	H3'	49.1°	21.4°
O3'	C3'	C4'	H3'	118.4°	122.6°
O3'	C3'	C4'	C5'	82.2°	119.8°
O3'	C3'	C4'	O4'	160.5°	120.6°
O3'	C3'	C4'	H4'	35.8°	1.3°
C4'	C3'	O3'	HO3'	70.7°	176.2°
C3'	C4'	C5'	O4'	114.7°	118.0°
C3'	C4'	C5'	H4'	120.4°	121.1°
C3'	C4'	O4'	H4'	120.0°	119.3°
C3'	C4'	C5'	O5'	53.7°	175.0°
C3'	C4'	C5'	H5'	173.7°	55.0°
C3'	C4'	C5'	H5'A	66.3°	65.0°
H3'	C3'	O3'	HO3'	53.9°	61.1°
H3'	C3'	C4'	C5'	36.2°	2.8°
H3'	C3'	C4'	O4'	81.1°	116.8°
H3'	C3'	C4'	H4'	154.2°	124.0°
C5'	C4'	O4'	H4'	117.7°	121.1°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	118.8°	120.0°
O4'	C4'	C5'	O5'	60.9°	67.0°
O4'	C4'	C5'	H5'	59.0°	173.0°
O4'	C4'	C5'	H5'A	179.1°	53.0°
H4'	C4'	C5'	O5'	174.2°	53.9°
H4'	C4'	C5'	H5'	65.9°	66.1°
H4'	C4'	C5'	H5'A	54.2°	173.9°
O5'	C5'	H5'	H5'A	118.8°	120.0°

Definition date:	2009-10-05
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3JXR