Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5AQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAXCAYsing1.53Å1.51Å
CAXNAWsing1.47Å1.44Å
CAYCAZsing1.51Å1.53Å
CBECAZdoub1.38Å1.37ÅAromatic
CBECBDsing1.38Å1.37ÅAromatic
CAZCBAsing1.38Å1.38ÅAromatic
NAWCAVsing1.35Å1.30Å
OBFCAVdoub1.21Å1.21Å
CBDCBCdoub1.38Å1.38ÅAromatic
N6C6sing1.39Å1.30Å
CAVCAUsing1.51Å1.52Å
CBACBBdoub1.38Å1.38ÅAromatic
CBCCBBsing1.38Å1.37ÅAromatic
C6N1doub1.33Å1.35ÅAromatic
C6C5sing1.41Å1.36ÅAromatic
CAUSATsing1.81Å1.82Å
N7C5sing1.36Å1.31ÅAromatic
N7C8doub1.31Å1.31ÅAromatic
N1C2sing1.32Å1.37ÅAromatic
C5C4doub1.40Å1.37ÅAromatic
C8SATsing1.76Å1.68Å
C8N9sing1.37Å1.31ÅAromatic
C2N3doub1.32Å1.29ÅAromatic
C4N9sing1.38Å1.29ÅAromatic
C4N3sing1.33Å1.31ÅAromatic
N9C1'sing1.46Å1.43Å
O4'C1'sing1.44Å1.41Å
O4'C4'sing1.44Å1.38Å
C1'C2'sing1.55Å1.51Å
C5'C4'sing1.53Å1.49Å
C5'O5'sing1.43Å1.40Å
C2'C3'sing1.55Å1.52Å
C2'O2'sing1.43Å1.37Å
C4'C3'sing1.54Å1.52Å
C3'O3'sing1.43Å1.41Å
C2H1sing1.08Å1.08Å
CBAH2sing1.08Å1.08Å
CBBH3sing1.08Å1.08Å
CBCH4sing1.08Å1.08Å
CBDH5sing1.08Å1.08Å
CBEH6sing1.08Å1.08Å
CAYH7sing1.09Å1.10Å
CAYH8sing1.09Å1.10Å
CAXH9sing1.09Å1.10Å
CAXH10sing1.09Å1.10Å
NAWH11sing0.97Å1.00Å
CAUH12sing1.09Å1.10Å
CAUH13sing1.09Å1.10Å
N6H14sing0.97Å1.00Å
N6H15sing0.97Å1.00Å
C1'H16sing1.09Å1.10Å
C4'H17sing1.09Å1.10Å
C5'H18sing1.09Å1.10Å
C5'H19sing1.09Å1.10Å
O5'H20sing0.97Å0.95Å
C3'H21sing1.09Å1.10Å
O3'H22sing0.97Å0.95Å
C2'H23sing1.09Å1.10Å
O2'H24sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAYCAXNAW108.5°109.4°
CAXCAYCAZ115.9°109.5°
CAXCAYH7107.9°109.5°
CAXCAYH8107.8°109.5°
CAYCAXH9109.7°109.5°
CAYCAXH10109.7°109.5°
CAXNAWCAV121.6°120.0°
NAWCAXH9109.7°109.4°
NAWCAXH10109.7°109.4°
CAXNAWH11119.2°120.0°
CAYCAZCBE120.6°120.0°
CAYCAZCBA120.0°120.0°
CAZCAYH7107.8°109.5°
CAZCAYH8107.9°109.5°
CAZCBECBD119.7°120.0°
CBECAZCBA119.3°120.0°
CAZCBEH6120.2°120.0°
CBECBDCBC120.9°120.0°
CBECBDH5119.6°120.0°
CBDCBEH6120.1°120.0°
CAZCBACBB121.4°120.0°
CAZCBAH2119.3°120.0°
NAWCAVOBF122.2°120.0°
NAWCAVCAU114.9°120.0°
CAVNAWH11119.2°120.0°
OBFCAVCAU122.8°120.0°
CBDCBCCBB119.6°120.0°
CBDCBCH4120.2°120.0°
CBCCBDH5119.6°120.0°
N6C6N1120.3°120.8°
N6C6C5122.2°120.7°
C6N6H14109.5°120.0°
C6N6H15109.4°120.0°
CAVCAUSAT114.2°109.5°
CAVCAUH12108.3°109.5°
CAVCAUH13108.3°109.5°
CBACBBCBC119.1°120.0°
CBBCBAH2119.3°120.0°
CBACBBH3120.5°120.0°
CBCCBBH3120.4°120.0°
CBBCBCH4120.2°120.0°
N1C6C5117.5°118.4°
C6N1C2121.4°121.2°
C6C5N7133.5°134.5°
C6C5C4118.4°118.2°
CAUSATC8103.0°100.0°
SATCAUH12108.3°109.5°
SATCAUH13108.3°109.4°
C5N7C8106.2°109.4°
N7C5C4108.1°107.3°
N7C8SAT124.8°125.1°
N7C8N9110.8°109.8°
N1C2N3120.2°122.4°
N1C2H1119.9°118.8°
C5C4N9107.3°106.2°
C5C4N3122.8°119.0°
SATC8N9124.4°125.1°
C8N9C4107.5°107.4°
C8N9C1'130.1°126.3°
C2N3C4119.6°120.7°
N3C2H1119.9°118.8°
N9C4N3129.8°134.7°
C4N9C1'122.3°126.3°
N9C1'O4'109.1°110.6°
N9C1'C2'111.9°110.6°
N9C1'H16110.0°110.6°
C1'O4'C4'105.6°106.9°
O4'C1'C2'106.6°103.5°
O4'C1'H16110.3°110.7°
O4'C4'C5'104.3°109.9°
O4'C4'C3'103.1°107.3°
O4'C4'H17115.9°109.9°
C1'C2'C3'103.1°102.1°
C1'C2'O2'106.6°110.9°
C2'C1'H16108.9°110.7°
C1'C2'H23111.8°110.9°
C4'C5'O5'110.5°109.4°
C5'C4'C3'105.0°109.8°
C5'C4'H17113.8°110.0°
C4'C5'H18109.2°109.5°
C4'C5'H19109.2°109.5°
O5'C5'H18109.2°109.5°
O5'C5'H19109.2°109.4°
C5'O5'H20109.5°114.0°
C3'C2'O2'108.9°110.9°
C2'C3'C4'102.5°104.2°
C2'C3'O3'111.6°110.5°
C2'C3'H21109.7°110.6°
C3'C2'H23111.7°110.9°
O2'C2'H23114.1°110.8°
C2'O2'H24109.5°114.0°
C4'C3'O3'111.6°110.5°
C3'C4'H17113.4°109.9°
C4'C3'H21109.7°110.5°
O3'C3'H21111.4°110.4°
C3'O3'H22109.5°114.0°
H7CAYH8109.5°109.5°
H9CAXH10109.5°109.5°
H12CAUH13109.5°109.5°
H14N6H15109.5°120.0°
H18C5'H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAYCAXNAWH9119.9°120.0°
CAYCAXNAWH10119.9°120.0°
CAXCAYCAZH7121.0°120.0°
CAXCAYCAZH8120.9°120.0°
CAXCAYCAZCBE76.9°90.0°
CAXCAYCAZCBA106.0°90.5°
CAYCAXNAWCAV84.8°180.0°
CAXCAYH7H8117.1°120.0°
CAYCAXH9H10120.5°120.0°
CAYCAXNAWH1195.2°0.0°
NAWCAXCAYCAZ42.9°180.0°
CAXNAWCAVH11180.0°180.0°
CAXNAWCAVOBF2.9°0.0°
CAXNAWCAVCAU179.2°180.0°
NAWCAXCAYH778.0°60.0°
NAWCAXCAYH8163.9°60.0°
NAWCAXH9H10120.4°120.0°
CAYCAZCBECBA177.1°179.5°
CAYCAZCBECBD178.7°180.0°
CAYCAZCBACBB178.8°180.0°
CAYCAZCBAH21.2°0.2°
CAYCAZCBEH61.4°0.5°
CAZCAYH7H8117.1°120.0°
CAZCAYCAXH976.9°60.0°
CAZCAYCAXH10162.8°60.1°
CAZCBECBDH6180.0°179.5°
CAZCBECBDCBC0.6°0.2°
CBECAZCBACBB1.7°0.5°
CBECAZCBAH2178.3°179.8°
CAZCBECBDH5179.4°179.8°
CBECAZCAYH7162.2°150.0°
CBECAZCAYH844.1°30.0°
CBDCBECAZCBA1.5°0.5°
CBECBDCBCH5180.0°180.0°
CBECBDCBCCBB0.1°0.1°
CBECBDCBCH4179.9°180.0°
CAZCBACBBH2180.0°179.8°
CAZCBACBBCBC0.9°0.2°
CAZCBACBBH3179.1°179.7°
CBACAZCBEH6178.5°179.9°
CBACAZCAYH714.9°29.5°
CBACAZCAYH8133.1°149.5°
NAWCAVOBFCAU177.8°180.0°
NAWCAVCAUSAT83.1°180.0°
CAVNAWCAXH9155.3°60.0°
CAVNAWCAXH1035.0°60.0°
NAWCAVCAUH1237.6°60.0°
NAWCAVCAUH13156.2°60.0°
OBFCAVCAUSAT99.0°0.0°
OBFCAVNAWH11177.1°180.0°
OBFCAVCAUH12140.3°120.0°
OBFCAVCAUH1321.7°120.0°
CBDCBCCBBCBA0.0°0.0°
CBDCBCCBBH4180.0°180.0°
CBDCBCCBBH3180.0°180.0°
CBCCBDCBEH6179.4°179.7°
N6C6N1C5179.5°179.5°
N6C6C5N70.2°0.4°
N6C6N1C2179.9°180.0°
N6C6C5C4179.3°179.8°
C6N6H14H15120.0°180.0°
CAVCAUSATH12120.7°120.0°
CAVCAUSATH13120.7°120.0°
CAVCAUSATC888.5°180.0°
CAUCAVNAWH110.8°0.0°
CAVCAUH12H13117.9°120.1°
CBACBBCBCH3180.0°180.0°
CBACBBCBCH4180.0°180.0°
CBCCBBCBAH2179.1°180.0°
CBBCBCCBDH5179.8°180.0°
N1C6C5N7179.7°179.9°
N1C6C5C40.2°0.7°
C6N1C2N30.5°0.0°
C6N1C2H1179.5°179.8°
N1C6N6H140.0°0.0°
N1C6N6H15120.0°180.0°
C6C5N7C4179.6°179.4°
C6C5N7C8179.5°179.3°
C5C6N1C20.4°0.5°
C6C5C4N9179.9°179.5°
C6C5C4N30.8°0.5°
C5C6N6H14179.5°179.5°
C5C6N6H1560.5°0.6°
CAUSATC8N722.0°0.1°
CAUSATC8N9159.0°180.0°
SATCAUH12H13117.9°119.9°
C5N7C8SAT179.6°179.9°
C5N7C8N90.6°0.0°
N7C5C4N90.4°0.0°
N7C5C4N3179.6°180.0°
C8N7C5C40.1°0.0°
N7C8SATN9178.9°179.9°
N7C8N9C40.9°0.0°
N7C8N9C1'179.3°180.0°
N1C2N3H1180.0°179.7°
N1C2N3C40.1°0.3°
C5C4N9C80.8°0.0°
C5C4N3C20.7°0.0°
C5C4N9N3179.0°180.0°
C5C4N9C1'179.4°180.0°
SATC8N9C4179.9°180.0°
SATC8N9C1'0.2°0.1°
C8SATCAUH1232.2°60.0°
C8SATCAUH13150.8°60.0°
C8N9C4C1'179.9°179.9°
C8N9C4N3179.8°180.0°
C8N9C1'O4'57.5°39.0°
C8N9C1'C2'60.2°75.0°
C8N9C1'H16178.6°162.0°
C2N3C4N9179.6°180.0°
C4N9C1'O4'122.7°140.9°
C4N9C1'C2'119.6°105.0°
C4N9C1'H161.6°17.9°
N3C4N9C1'0.3°0.0°
C4N3C2H1179.9°180.0°
N9C1'O4'C2'121.0°118.5°
N9C1'O4'H16121.0°122.9°
N9C1'O4'C4'155.4°158.6°
N9C1'C2'H16121.9°122.9°
N9C1'C2'C3'128.4°155.5°
N9C1'C2'O2'117.0°86.3°
N9C1'C2'H238.3°37.3°
O4'C1'C2'H16118.9°118.7°
C1'O4'C4'C5'154.3°145.9°
O4'C1'C2'C3'9.2°37.0°
O4'C1'C2'O2'123.8°155.3°
C1'O4'C4'C3'44.8°26.6°
C1'O4'C4'H1779.7°92.9°
O4'C1'C2'H23110.9°81.2°
C4'O4'C1'C2'34.4°40.1°
O4'C4'C5'C3'108.1°117.8°
O4'C4'C5'H17127.3°121.1°
O4'C4'C5'O5'104.0°66.5°
O4'C4'C3'C2'37.5°2.1°
O4'C4'C3'H17126.1°119.5°
O4'C4'C3'O3'157.0°120.7°
C4'O4'C1'H1683.7°78.5°
O4'C4'C5'H18135.8°173.5°
O4'C4'C5'H1916.2°53.5°
O4'C4'C3'H2179.1°116.8°
C1'C2'C3'O2'112.9°118.2°
C1'C2'C3'H23120.1°118.2°
C1'C2'O2'H23123.9°123.6°
C1'C2'C3'C4'16.4°20.9°
C1'C2'C3'O3'135.8°97.8°
C1'C2'C3'H21100.2°139.7°
C1'C2'O2'H24180.0°180.0°
C4'C5'O5'H18120.2°120.0°
C4'C5'O5'H19120.1°120.0°
C5'C4'C3'C2'146.4°121.5°
C5'C4'C3'H17124.9°121.1°
C5'C4'C3'O3'94.1°119.9°
C4'C5'H18H19119.5°120.0°
C4'C5'O5'H20180.0°180.0°
C5'C4'C3'H2129.9°2.6°
O5'C5'C4'C3'147.9°175.7°
O5'C5'C4'H1723.3°54.7°
O5'C5'H18H19119.6°120.0°
C3'C2'O2'H23125.5°123.6°
C2'C3'C4'O3'119.5°118.7°
C2'C3'C4'H21116.5°118.9°
C2'C3'O3'H21123.0°122.7°
C3'C2'C1'H16109.7°81.6°
C2'C3'C4'H1788.7°117.4°
C2'C3'O3'H22180.0°176.2°
C3'C2'O2'H2469.4°67.3°
O2'C2'C3'C4'96.6°139.0°
O2'C2'C3'O3'22.9°20.4°
O2'C2'C1'H164.9°36.6°
O2'C2'C3'H21146.9°102.2°
C4'C3'O3'H21123.0°122.5°
C3'C4'C5'H1827.8°55.7°
C3'C4'C5'H1991.9°64.3°
C4'C3'O3'H2266.0°61.5°
C4'C3'C2'H23136.5°97.4°
O3'C3'C4'H1730.8°1.3°
O3'C3'C2'H23104.0°144.0°
H2CBACBBH30.9°0.0°
H3CBBCBCH40.0°0.0°
H4CBCCBDH50.1°0.0°
H5CBDCBEH60.6°0.3°
H7CAYCAXH9162.2°180.0°
H7CAYCAXH1041.9°59.9°
H8CAYCAXH944.0°59.9°
H8CAYCAXH1076.3°180.0°
H9CAXNAWH1124.7°120.0°
H10CAXNAWH11145.0°120.0°
H16C1'C2'H23130.2°160.2°
H17C4'C5'H1896.9°65.3°
H17C4'C5'H19143.4°174.6°
H17C4'C3'H21154.8°123.7°
H18C5'O5'H2059.9°60.0°
H19C5'O5'H2059.8°60.0°
H21C3'O3'H2257.0°61.1°
H21C3'C2'H2320.0°21.4°
H23C2'O2'H2456.2°56.3°

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon