5AL
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O | doub | 1.21Å | 1.22Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | O1A | sing | 1.61Å | 1.50Å | |
| C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.35Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.43Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.44Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.35Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| N7 | C5 | sing | 1.35Å | 1.34Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.35Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| CA | C | sing | 1.51Å | 1.49Å | |
| CA | N | sing | 1.47Å | 1.46Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CB | HBB | sing | 1.09Å | 1.10Å | |
| C1' | N9 | sing | 1.46Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1A | HO1A | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.55Å | 1.49Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | C2' | sing | 1.43Å | 1.45Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O2A | P | doub | 1.48Å | 1.51Å | |
| C3' | C2' | sing | 1.55Å | 1.46Å | |
| C3' | C4' | sing | 1.54Å | 1.47Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O3A | C | sing | 1.34Å | 1.46Å | |
| O3A | P | sing | 1.61Å | 1.61Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| N | H18 | sing | 1.01Å | 1.00Å | |
| CA | H19 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 120.2° | 120.0° |
| O | C | O3A | 119.8° | 120.0° |
| HN | N | CA | 109.5° | 111.0° |
| HN | N | H18 | 109.5° | 111.0° |
| O5' | P | O1A | 109.3° | 109.5° |
| O5' | P | O2A | 108.5° | 109.4° |
| O5' | P | O3A | 104.0° | 109.4° |
| P | O5' | C5' | 120.0° | 123.0° |
| P | O1A | HO1A | 109.5° | 114.0° |
| O1A | P | O2A | 120.2° | 109.5° |
| O1A | P | O3A | 108.6° | 109.5° |
| N1 | C2 | H2 | 118.7° | 118.8° |
| N1 | C2 | N3 | 122.7° | 122.5° |
| C2 | N1 | C6 | 121.3° | 121.2° |
| H2 | C2 | N3 | 118.6° | 118.7° |
| C2 | N3 | C4 | 120.5° | 120.6° |
| N3 | C4 | C5 | 119.0° | 119.1° |
| N3 | C4 | N9 | 133.4° | 134.9° |
| C4 | C5 | C6 | 118.3° | 118.1° |
| C4 | C5 | N7 | 106.5° | 107.2° |
| C5 | C4 | N9 | 107.6° | 106.0° |
| C5 | C6 | N1 | 118.2° | 118.5° |
| C5 | C6 | N6 | 121.4° | 120.7° |
| C6 | C5 | N7 | 135.2° | 134.7° |
| N1 | C6 | N6 | 120.4° | 120.8° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| C5 | N7 | C8 | 107.7° | 109.4° |
| N7 | C8 | H8 | 124.8° | 125.0° |
| N7 | C8 | N9 | 110.4° | 110.0° |
| H8 | C8 | N9 | 124.8° | 125.0° |
| C4 | N9 | C8 | 107.7° | 107.4° |
| C4 | N9 | C1' | 124.6° | 126.3° |
| C8 | N9 | C1' | 127.6° | 126.3° |
| C | CA | N | 118.4° | 109.5° |
| C | CA | CB | 117.3° | 109.4° |
| CA | C | O3A | 119.9° | 120.0° |
| C | CA | H19 | 98.1° | 109.5° |
| N | CA | CB | 117.1° | 109.5° |
| CA | N | H18 | 109.5° | 111.0° |
| N | CA | H19 | 98.5° | 109.5° |
| CA | CB | HB | 109.5° | 109.5° |
| CA | CB | HBA | 109.5° | 109.5° |
| CA | CB | HBB | 109.4° | 109.4° |
| CB | CA | H19 | 100.4° | 109.4° |
| HB | CB | HBA | 109.5° | 109.5° |
| HB | CB | HBB | 109.5° | 109.5° |
| HBA | CB | HBB | 109.5° | 109.4° |
| N9 | C1' | H1' | 104.4° | 110.6° |
| N9 | C1' | C2' | 113.3° | 110.6° |
| N9 | C1' | O4' | 111.1° | 110.6° |
| H1' | C1' | C2' | 110.4° | 110.6° |
| H1' | C1' | O4' | 112.6° | 110.6° |
| C1' | C2' | H2' | 108.4° | 110.9° |
| C1' | C2' | O2' | 117.6° | 110.9° |
| C1' | C2' | C3' | 107.8° | 102.1° |
| C2' | C1' | O4' | 105.2° | 103.6° |
| H2' | C2' | O2' | 95.6° | 110.8° |
| H2' | C2' | C3' | 108.3° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O2' | C2' | C3' | 117.7° | 111.0° |
| O2A | P | O3A | 105.1° | 109.5° |
| C2' | C3' | C4' | 103.7° | 104.2° |
| C2' | C3' | H3' | 109.9° | 110.5° |
| C2' | C3' | O3' | 121.4° | 110.5° |
| C4' | C3' | H3' | 112.7° | 110.5° |
| C4' | C3' | O3' | 119.2° | 110.4° |
| C3' | C4' | O4' | 109.7° | 107.4° |
| C3' | C4' | H4' | 103.8° | 109.9° |
| C3' | C4' | C5' | 122.4° | 109.9° |
| H3' | C3' | O3' | 89.3° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C | O3A | P | 124.5° | 117.0° |
| O4' | C4' | H4' | 109.4° | 109.8° |
| C4' | O4' | C1' | 108.4° | 106.9° |
| O4' | C4' | C5' | 119.1° | 110.0° |
| H4' | C4' | C5' | 87.5° | 110.0° |
| C4' | C5' | O5' | 107.7° | 109.5° |
| C4' | C5' | H5' | 110.1° | 109.5° |
| C4' | C5' | H5'A | 110.0° | 109.4° |
| O5' | C5' | H5' | 110.1° | 109.5° |
| O5' | C5' | H5'A | 110.0° | 109.5° |
| H5' | C5' | H5'A | 108.9° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | O3A | 179.8° | 179.8° |
| O | C | CA | N | 36.4° | 20.0° |
| O | C | CA | CB | 113.2° | 100.1° |
| O | C | O3A | P | 7.9° | 0.1° |
| O | C | CA | H19 | 140.6° | 140.0° |
| HN | N | CA | C | 180.0° | 60.0° |
| HN | N | CA | H18 | 120.0° | 124.0° |
| HN | N | CA | CB | 30.4° | 60.0° |
| HN | N | CA | H19 | 76.0° | 180.0° |
| O5' | P | O1A | O2A | 126.3° | 120.0° |
| O5' | P | O1A | O3A | 112.9° | 120.0° |
| O5' | P | O1A | HO1A | 126.3° | 60.0° |
| O5' | P | O2A | O3A | 110.8° | 119.9° |
| O5' | P | O3A | C | 56.1° | 175.0° |
| P | O5' | C5' | C4' | 121.2° | 180.0° |
| P | O5' | C5' | H5' | 118.8° | 60.0° |
| P | O5' | C5' | H5'A | 1.2° | 60.0° |
| O1A | P | O2A | O3A | 122.5° | 120.1° |
| O1A | P | O3A | C | 60.2° | 65.0° |
| O1A | P | O5' | C5' | 174.0° | 65.0° |
| N1 | C2 | H2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.1° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| H2 | C2 | N3 | C4 | 179.9° | 180.0° |
| H2 | C2 | N1 | C6 | 179.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| N3 | C2 | N1 | C6 | 0.0° | 0.1° |
| C2 | N3 | C4 | N9 | 180.0° | 180.0° |
| N3 | C4 | C5 | N9 | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| N3 | C4 | C5 | N7 | 179.8° | 180.0° |
| N3 | C4 | N9 | C8 | 179.8° | 180.0° |
| N3 | C4 | N9 | C1' | 0.3° | 0.0° |
| C4 | C5 | C6 | N7 | 179.4° | 180.0° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | C6 | N6 | 180.0° | 180.0° |
| C4 | C5 | N7 | C8 | 0.2° | 0.0° |
| C5 | C4 | N9 | C8 | 0.2° | 0.0° |
| C5 | C4 | N9 | C1' | 179.7° | 180.0° |
| C5 | C6 | N1 | N6 | 179.7° | 180.0° |
| C5 | C6 | N6 | HN6 | 179.7° | 0.0° |
| C5 | C6 | N6 | HN6A | 60.3° | 179.9° |
| C6 | C5 | N7 | C8 | 179.6° | 180.0° |
| C6 | C5 | C4 | N9 | 179.8° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 180.0° |
| N1 | C6 | N6 | HN6A | 120.0° | 0.0° |
| N1 | C6 | C5 | N7 | 179.7° | 179.9° |
| C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
| N6 | C6 | C5 | N7 | 0.6° | 0.0° |
| C5 | N7 | C8 | H8 | 179.9° | 180.0° |
| N7 | C5 | C4 | N9 | 0.2° | 0.0° |
| C5 | N7 | C8 | N9 | 0.1° | 0.0° |
| N7 | C8 | H8 | N9 | 180.0° | 180.0° |
| N7 | C8 | N9 | C4 | 0.1° | 0.0° |
| N7 | C8 | N9 | C1' | 179.6° | 179.9° |
| H8 | C8 | N9 | C4 | 179.9° | 180.0° |
| H8 | C8 | N9 | C1' | 0.4° | 0.0° |
| C4 | N9 | C8 | C1' | 179.5° | 180.0° |
| C4 | N9 | C1' | H1' | 9.0° | 35.6° |
| C4 | N9 | C1' | C2' | 111.1° | 87.2° |
| C4 | N9 | C1' | O4' | 130.7° | 158.6° |
| C8 | N9 | C1' | H1' | 170.4° | 144.3° |
| C8 | N9 | C1' | C2' | 69.4° | 92.8° |
| C8 | N9 | C1' | O4' | 48.8° | 21.4° |
| C | CA | N | CB | 149.6° | 120.0° |
| C | CA | N | H19 | 104.0° | 120.1° |
| C | CA | CB | H19 | 104.8° | 120.0° |
| C | CA | CB | HB | 180.0° | 60.0° |
| C | CA | CB | HBA | 60.0° | 180.0° |
| C | CA | CB | HBB | 60.0° | 60.1° |
| CA | C | O3A | P | 171.9° | 179.7° |
| C | CA | N | H18 | 60.0° | 176.1° |
| N | CA | CB | H19 | 105.2° | 120.0° |
| N | CA | CB | HB | 30.0° | 180.0° |
| N | CA | CB | HBA | 90.0° | 59.9° |
| N | CA | CB | HBB | 150.0° | 60.0° |
| N | CA | C | O3A | 143.9° | 160.3° |
| CA | CB | HB | HBA | 120.0° | 120.0° |
| CA | CB | HB | HBB | 120.0° | 120.0° |
| CA | CB | HBA | HBB | 120.0° | 119.9° |
| CB | CA | C | O3A | 66.6° | 79.7° |
| CB | CA | N | H18 | 150.3° | 63.9° |
| HB | CB | HBA | HBB | 120.0° | 120.0° |
| HB | CB | CA | H19 | 75.2° | 60.0° |
| HBA | CB | CA | H19 | 164.8° | 60.1° |
| HBB | CB | CA | H19 | 44.8° | 179.9° |
| N9 | C1' | H1' | C2' | 122.1° | 122.8° |
| N9 | C1' | H1' | O4' | 120.7° | 122.9° |
| N9 | C1' | C2' | O4' | 121.6° | 118.6° |
| N9 | C1' | C2' | H2' | 17.2° | 37.3° |
| N9 | C1' | C2' | O2' | 124.1° | 86.2° |
| N9 | C1' | C2' | C3' | 99.9° | 155.5° |
| N9 | C1' | O4' | C4' | 111.2° | 158.4° |
| H1' | C1' | C2' | O4' | 121.7° | 118.6° |
| H1' | C1' | C2' | H2' | 99.5° | 160.2° |
| H1' | C1' | C2' | O2' | 7.4° | 36.6° |
| H1' | C1' | C2' | C3' | 143.5° | 81.6° |
| H1' | C1' | O4' | C4' | 132.1° | 78.7° |
| HO1A | O1A | P | O2A | 0.0° | 180.0° |
| HO1A | O1A | P | O3A | 120.9° | 60.0° |
| C1' | C2' | H2' | O2' | 121.6° | 123.6° |
| C1' | C2' | H2' | C3' | 116.7° | 112.7° |
| C1' | C2' | O2' | C3' | 131.7° | 112.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | C4' | 22.5° | 20.9° |
| C1' | C2' | C3' | H3' | 98.1° | 139.6° |
| C1' | C2' | C3' | O3' | 160.0° | 97.8° |
| C2' | C1' | O4' | C4' | 11.8° | 39.9° |
| H2' | C2' | O2' | C3' | 114.1° | 123.7° |
| H2' | C2' | O2' | HO2' | 65.8° | 56.4° |
| H2' | C2' | C3' | C4' | 139.7° | 97.3° |
| H2' | C2' | C3' | H3' | 19.0° | 21.4° |
| H2' | C2' | C3' | O3' | 82.9° | 144.0° |
| H2' | C2' | C1' | O4' | 138.8° | 81.2° |
| O2' | C2' | C3' | C4' | 113.5° | 139.1° |
| O2' | C2' | C3' | H3' | 125.8° | 102.3° |
| O2' | C2' | C3' | O3' | 23.9° | 20.4° |
| O2' | C2' | C1' | O4' | 114.4° | 155.2° |
| HO2' | O2' | C2' | C3' | 48.3° | 67.3° |
| O2A | P | O3A | C | 170.0° | 55.1° |
| O2A | P | O5' | C5' | 53.3° | 55.0° |
| C2' | C3' | C4' | H3' | 118.8° | 118.7° |
| C2' | C3' | C4' | O3' | 138.6° | 118.7° |
| C2' | C3' | H3' | O3' | 123.3° | 122.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | O4' | 15.4° | 1.9° |
| C2' | C3' | C4' | H4' | 101.5° | 117.4° |
| C3' | C2' | C1' | O4' | 21.7° | 37.0° |
| C2' | C3' | C4' | C5' | 162.6° | 121.5° |
| C4' | C3' | H3' | O3' | 121.6° | 122.5° |
| C4' | C3' | O3' | HO3' | 48.8° | 176.2° |
| C3' | C4' | O4' | H4' | 113.3° | 119.4° |
| C3' | C4' | O4' | C5' | 148.4° | 119.5° |
| C3' | C4' | H4' | C5' | 122.8° | 121.1° |
| C3' | C4' | O4' | C1' | 2.2° | 26.3° |
| C3' | C4' | C5' | O5' | 77.5° | 175.0° |
| C3' | C4' | C5' | H5' | 162.5° | 55.0° |
| C3' | C4' | C5' | H5'A | 42.5° | 65.0° |
| H3' | C3' | O3' | HO3' | 67.0° | 61.2° |
| H3' | C3' | C4' | O4' | 103.3° | 116.8° |
| H3' | C3' | C4' | H4' | 139.8° | 123.9° |
| H3' | C3' | C4' | C5' | 43.8° | 2.7° |
| O3' | C3' | C4' | O4' | 154.0° | 120.6° |
| O3' | C3' | C4' | H4' | 37.1° | 1.3° |
| O3' | C3' | C4' | C5' | 58.9° | 119.8° |
| O3A | C | CA | H19 | 39.7° | 40.2° |
| O3A | P | O5' | C5' | 58.2° | 175.0° |
| O4' | C4' | H4' | C5' | 120.1° | 121.1° |
| O4' | C4' | C5' | O5' | 66.7° | 67.0° |
| O4' | C4' | C5' | H5' | 53.3° | 172.9° |
| O4' | C4' | C5' | H5'A | 173.3° | 52.9° |
| H4' | C4' | O4' | C1' | 111.1° | 93.1° |
| H4' | C4' | C5' | O5' | 177.7° | 54.0° |
| H4' | C4' | C5' | H5' | 57.6° | 66.1° |
| H4' | C4' | C5' | H5'A | 62.4° | 173.9° |
| C1' | O4' | C4' | C5' | 150.6° | 145.8° |
| C4' | C5' | O5' | H5' | 120.0° | 120.1° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.7° | 120.0° |
| O5' | C5' | H5' | H5'A | 120.7° | 120.0° |
| H18 | N | CA | H19 | 44.0° | 56.0° |
