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5AK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CANCAMsing1.53Å1.53Å
CANCAYsing1.51Å1.39Å
CAMNASsing1.46Å1.47Å
CAYCAKdoub1.38Å1.39ÅAromatic
CAYCAJsing1.38Å1.39ÅAromatic
CAKCAWsing1.38Å1.39ÅAromatic
NASCAVsing1.35Å1.34Å
N6C6sing1.38Å1.33Å
CAJCAGdoub1.38Å1.39ÅAromatic
OABCAVdoub1.21Å1.23Å
CAVCAOsing1.51Å1.53Å
CAWBRsing1.89Å1.88Å
CAWCAIdoub1.38Å1.39ÅAromatic
C6N1doub1.33Å1.34ÅAromatic
C6C5sing1.41Å1.33ÅAromatic
CAGCAIsing1.38Å1.39ÅAromatic
N1C2sing1.32Å1.48ÅAromatic
N7C5sing1.36Å1.33ÅAromatic
N7C8doub1.31Å1.33ÅAromatic
CAOSAUsing1.81Å1.83Å
C5C4doub1.40Å1.34ÅAromatic
C8SAUsing1.76Å1.75Å
C8N9sing1.37Å1.32ÅAromatic
C2N3doub1.32Å1.48ÅAromatic
C4N3sing1.33Å1.34ÅAromatic
C4N9sing1.38Å1.33ÅAromatic
N9C1'sing1.46Å1.48Å
O4'C1'sing1.44Å1.43Å
O4'C4'sing1.44Å1.43Å
C1'C2'sing1.55Å1.52Å
C2'C3'sing1.55Å1.52Å
C2'O2'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
C4'C3'sing1.54Å1.52Å
C3'O3'sing1.43Å1.43Å
CAKH1sing1.08Å1.08Å
CAIH2sing1.08Å1.08Å
CAGH3sing1.08Å1.08Å
CAJH4sing1.08Å1.08Å
CANH5sing1.09Å1.10Å
CANH6sing1.09Å1.10Å
CAMH7sing1.09Å1.10Å
CAMH8sing1.09Å1.10Å
NASH9sing0.97Å1.00Å
CAOH10sing1.09Å1.10Å
CAOH11sing1.09Å1.10Å
N6H12sing0.97Å1.00Å
N6H13sing0.97Å1.00Å
C2H14sing1.08Å1.08Å
C1'H15sing1.09Å1.10Å
C4'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
C5'H18sing1.09Å1.10Å
O5'H19sing0.97Å0.95Å
C3'H20sing1.09Å1.10Å
O3'H21sing0.97Å0.95Å
C2'H22sing1.09Å1.10Å
O2'H23sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAMCANCAY109.5°109.5°
CANCAMNAS109.5°109.4°
CAMCANH5109.5°109.4°
CAMCANH6109.5°109.6°
CANCAMH7109.5°109.4°
CANCAMH8109.5°109.5°
CANCAYCAK120.0°120.0°
CANCAYCAJ120.0°120.0°
CAYCANH5109.4°109.4°
CAYCANH6109.5°109.5°
CAMNASCAV122.0°120.0°
NASCAMH7109.5°109.5°
NASCAMH8109.5°109.5°
CAMNASH9119.0°120.0°
CAKCAYCAJ120.0°120.0°
CAYCAKCAW120.0°120.0°
CAYCAKH1120.0°120.0°
CAYCAJCAG120.0°120.0°
CAYCAJH4120.0°120.0°
CAKCAWBR120.0°120.1°
CAKCAWCAI120.0°120.0°
CAWCAKH1120.0°120.0°
NASCAVOAB124.0°120.0°
NASCAVCAO115.0°120.0°
CAVNASH9119.0°120.0°
N6C6N1121.2°120.8°
N6C6C5115.9°120.7°
C6N6H12109.5°120.0°
C6N6H13109.5°120.0°
CAJCAGCAI120.0°120.0°
CAJCAGH3120.0°120.0°
CAGCAJH4120.0°120.0°
OABCAVCAO121.0°120.0°
CAVCAOSAU109.5°109.5°
CAVCAOH10109.4°109.5°
CAVCAOH11109.5°109.5°
BRCAWCAI120.0°120.0°
CAWCAICAG120.0°120.0°
CAWCAIH2120.0°120.0°
N1C6C5122.9°118.5°
C6N1C2121.2°121.2°
C6C5N7130.7°134.5°
C6C5C4121.0°118.1°
CAGCAIH2120.0°120.0°
CAICAGH3120.0°120.0°
N1C2N3111.3°122.5°
N1C2H14124.4°118.8°
C5N7C8106.7°109.4°
N7C5C4108.3°107.3°
N7C8SAU125.1°125.1°
N7C8N9109.9°109.8°
CAOSAUC8100.0°100.0°
SAUCAOH10109.5°109.4°
SAUCAOH11109.5°109.5°
C5C4N3121.3°119.1°
C5C4N9108.1°106.2°
SAUC8N9125.0°125.1°
C8N9C4106.9°107.4°
C8N9C1'126.5°126.3°
C2N3C4122.4°120.6°
N3C2H14124.4°118.7°
N3C4N9130.6°134.7°
C4N9C1'126.5°126.3°
N9C1'O4'109.5°110.6°
N9C1'C2'111.0°110.6°
N9C1'H15110.7°110.6°
C1'O4'C4'104.0°107.0°
O4'C1'C2'104.0°103.5°
O4'C1'H15111.3°110.8°
O4'C4'C5'109.5°109.8°
O4'C4'C3'104.0°107.3°
O4'C4'H16112.1°109.9°
C1'C2'C3'104.1°102.1°
C1'C2'O2'109.5°110.9°
C2'C1'H15110.1°110.6°
C1'C2'H22110.7°110.9°
C3'C2'O2'109.5°110.9°
C2'C3'C4'104.1°104.2°
C2'C3'O3'109.5°110.5°
C2'C3'H20110.8°110.6°
C3'C2'H22110.7°110.9°
O2'C2'H22112.0°110.8°
C2'O2'H23109.5°114.0°
C4'C5'O5'109.5°109.5°
C5'C4'C3'109.5°109.9°
C5'C4'H16110.7°110.0°
C4'C5'H17109.5°109.4°
C4'C5'H18109.5°109.5°
O5'C5'H17109.5°109.5°
O5'C5'H18109.5°109.5°
C5'O5'H19109.5°113.9°
C4'C3'O3'109.5°110.5°
C3'C4'H16110.8°109.9°
C4'C3'H20110.7°110.6°
O3'C3'H20112.0°110.4°
C3'O3'H21109.5°113.9°
H5CANH6109.5°109.4°
H7CAMH8109.4°109.5°
H10CAOH11109.5°109.5°
H12N6H13109.4°119.9°
H17C5'H18109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAMCANCAYH5120.0°119.9°
CAMCANCAYH6120.0°120.1°
CANCAMNASH7120.0°119.9°
CANCAMNASH8120.0°120.0°
CAMCANCAYCAK133.6°90.1°
CAMCANCAYCAJ46.4°89.5°
CANCAMNASCAV143.2°179.9°
CAMCANH5H6120.0°120.1°
CANCAMH7H8120.0°120.0°
CANCAMNASH936.8°0.0°
CAYCANCAMNAS34.0°180.0°
CANCAYCAKCAJ180.0°179.6°
CANCAYCAKCAW180.0°180.0°
CANCAYCAJCAG180.0°180.0°
CANCAYCAKH10.0°0.2°
CANCAYCAJH40.0°0.2°
CAYCANH5H6120.0°120.0°
CAYCANCAMH7154.0°60.0°
CAYCANCAMH886.1°59.9°
CAMNASCAVH9180.0°180.0°
CAMNASCAVOAB0.1°0.0°
CAMNASCAVCAO180.0°180.0°
NASCAMCANH5154.0°60.0°
NASCAMCANH686.0°60.0°
NASCAMH7H8120.0°120.1°
CAYCAKCAWH1180.0°179.8°
CAKCAYCAJCAG0.0°0.5°
CAYCAKCAWBR180.0°179.8°
CAYCAKCAWCAI0.0°0.2°
CAKCAYCAJH4180.0°179.8°
CAKCAYCANH5106.4°150.0°
CAKCAYCANH613.6°30.0°
CAJCAYCAKCAW0.0°0.4°
CAYCAJCAGH4180.0°179.7°
CAYCAJCAGCAI0.0°0.2°
CAJCAYCAKH1180.0°179.8°
CAYCAJCAGH3180.0°179.8°
CAJCAYCANH573.6°30.5°
CAJCAYCANH6166.4°150.4°
CAKCAWBRCAI180.0°179.9°
CAKCAWCAICAG0.0°0.0°
CAKCAWCAIH2180.0°180.0°
NASCAVOABCAO179.9°180.0°
NASCAVCAOSAU83.0°180.0°
CAVNASCAMH796.8°60.0°
CAVNASCAMH823.2°60.0°
NASCAVCAOH1037.0°60.0°
NASCAVCAOH11157.0°60.0°
N6C6N1C5179.9°179.9°
N6C6N1C2180.0°179.9°
N6C6C5N70.0°0.1°
N6C6C5C4180.0°179.9°
C6N6H12H13120.0°179.9°
CAJCAGCAICAW0.0°0.0°
CAJCAGCAIH3180.0°180.0°
CAJCAGCAIH2180.0°179.9°
OABCAVCAOSAU96.9°0.1°
OABCAVNASH9179.9°180.0°
OABCAVCAOH10143.1°120.0°
OABCAVCAOH1123.1°120.0°
CAVCAOSAUH10120.0°120.0°
CAVCAOSAUH11120.0°120.1°
CAVCAOSAUC8100.2°180.0°
CAOCAVNASH90.0°0.0°
CAVCAOH10H11120.0°120.1°
BRCAWCAICAG180.0°180.0°
BRCAWCAKH10.1°0.0°
BRCAWCAIH20.0°0.1°
CAWCAICAGH2180.0°179.9°
CAICAWCAKH1180.0°180.0°
CAWCAICAGH3179.9°180.0°
N1C6C5N7180.0°180.0°
N1C6C5C40.1°0.1°
C6N1C2N30.0°0.0°
N1C6N6H120.0°0.0°
N1C6N6H13120.0°180.0°
C6N1C2H14180.0°180.0°
C5C6N1C20.0°0.1°
C6C5N7C4180.0°179.9°
C6C5N7C8180.0°180.0°
C6C5C4N30.0°0.0°
C6C5C4N9180.0°179.7°
C5C6N6H12179.9°179.9°
C5C6N6H1359.9°0.1°
CAICAGCAJH4180.0°180.0°
N1C2N3H14180.0°179.9°
N1C2N3C40.0°0.0°
C5N7C8SAU180.0°179.8°
C5N7C8N90.0°0.3°
N7C5C4N3180.0°180.0°
N7C5C4N90.0°0.2°
N7C8SAUCAO23.4°0.5°
C8N7C5C40.0°0.0°
N7C8SAUN9179.9°179.5°
N7C8N9C40.0°0.4°
N7C8N9C1'180.0°179.7°
CAOSAUC8N9156.6°180.0°
SAUCAOH10H11120.0°120.0°
C5C4N9C80.0°0.4°
C5C4N3C20.0°0.0°
C5C4N3N9180.0°179.7°
C5C4N9C1'180.0°179.7°
SAUC8N9C4180.0°179.9°
SAUC8N9C1'0.1°0.1°
C8SAUCAOH1019.8°60.0°
C8SAUCAOH11139.8°60.0°
C8N9C4N3180.0°179.9°
C8N9C4C1'180.0°179.9°
C8N9C1'O4'57.5°38.9°
C8N9C1'C2'56.8°75.1°
C8N9C1'H15179.4°162.0°
C2N3C4N9180.0°179.7°
N3C4N9C1'0.0°0.0°
C4N3C2H14180.0°180.0°
C4N9C1'O4'122.4°141.0°
C4N9C1'C2'123.2°105.0°
C4N9C1'H150.7°17.9°
N9C1'O4'C2'118.7°118.5°
N9C1'O4'H15122.7°122.9°
N9C1'O4'C4'161.9°158.6°
N9C1'C2'H15122.9°122.9°
N9C1'C2'C3'143.2°155.5°
N9C1'C2'O2'99.8°86.3°
N9C1'C2'H2224.2°37.3°
O4'C1'C2'H15119.4°118.7°
O4'C1'C2'C3'25.5°37.1°
O4'C1'C2'O2'142.5°155.3°
C1'O4'C4'C5'160.5°146.0°
C1'O4'C4'C3'43.6°26.6°
C1'O4'C4'H1676.2°92.9°
O4'C1'C2'H2293.5°81.2°
C4'O4'C1'C2'43.2°40.1°
O4'C4'C3'C2'26.3°2.1°
O4'C4'C5'C3'113.4°117.8°
O4'C4'C5'H16124.1°121.0°
O4'C4'C5'O5'96.8°66.5°
O4'C4'C3'H16120.7°119.4°
O4'C4'C3'O3'143.2°120.7°
C4'O4'C1'H1575.3°78.5°
O4'C4'C5'H17143.2°173.5°
O4'C4'C5'H1823.2°53.5°
O4'C4'C3'H2092.8°116.8°
C1'C2'C3'O2'117.0°118.2°
C1'C2'C3'H22119.0°118.2°
C1'C2'O2'H22123.2°123.6°
C1'C2'C3'C4'0.5°20.9°
C1'C2'C3'O3'117.5°97.8°
C1'C2'C3'H20118.5°139.7°
C1'C2'O2'H23180.0°180.0°
C3'C2'O2'H22123.2°123.7°
C2'C3'C4'C5'143.2°121.4°
C2'C3'C4'O3'117.0°118.6°
C2'C3'C4'H20119.0°118.8°
C2'C3'O3'H20123.3°122.6°
C3'C2'C1'H1593.9°81.6°
C2'C3'C4'H1694.4°117.4°
C2'C3'O3'H21180.0°176.2°
C3'C2'O2'H2366.4°67.3°
O2'C2'C3'C4'116.6°139.0°
O2'C2'C3'O3'0.4°20.4°
O2'C2'C1'H1523.1°36.6°
O2'C2'C3'H20124.4°102.1°
C4'C5'O5'H17120.0°119.9°
C4'C5'O5'H18120.0°120.0°
C5'C4'C3'H16122.4°121.2°
C5'C4'C3'O3'99.8°119.9°
C4'C5'H17H18120.0°120.0°
C4'C5'O5'H19180.0°180.0°
C5'C4'C3'H2024.2°2.6°
O5'C5'C4'C3'149.8°175.7°
O5'C5'C4'H1627.3°54.5°
O5'C5'H17H18120.0°120.1°
C4'C3'O3'H20123.2°122.6°
C3'C4'C5'H1729.8°55.7°
C3'C4'C5'H1890.2°64.2°
C4'C3'O3'H2166.5°61.5°
C4'C3'C2'H22119.5°97.4°
O3'C3'C4'H1622.6°1.3°
O3'C3'C2'H22123.6°144.0°
H2CAICAGH30.0°0.0°
H3CAGCAJH40.1°0.0°
H5CANCAMH786.0°180.0°
H5CANCAMH833.9°60.0°
H6CANCAMH734.0°60.0°
H6CANCAMH8153.9°180.0°
H7CAMNASH983.3°119.9°
H8CAMNASH9156.8°120.0°
H15C1'C2'H22147.0°160.2°
H16C4'C5'H1792.7°65.4°
H16C4'C5'H18147.3°174.6°
H16C4'C3'H20146.6°123.8°
H17C5'O5'H1960.0°60.1°
H18C5'O5'H1960.0°59.9°
H20C3'O3'H2156.7°61.2°
H20C3'C2'H220.5°21.5°
H22C2'O2'H2356.8°56.4°

227111

PDB entries from 2024-11-06

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