Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5AF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C5sing1.53Å1.55Å
C1H2sing1.09Å1.10Å
C1H4sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C5C8sing1.53Å1.55Å
C5H6sing1.09Å1.10Å
C5H7sing1.09Å1.10Å
C8C9sing1.53Å1.55Å
C8N17sing1.47Å1.46Å
C8H16sing1.09Å1.10Å
C9C10sing1.53Å1.54Å
C9H15sing1.09Å1.10Å
C9H14sing1.09Å1.10Å
C10H11sing1.09Å1.10Å
C10H13sing1.09Å1.10Å
C10H12sing1.09Å1.10Å
N17C19sing1.47Å1.34Å
N17H18sing1.01Å1.00Å
C19N20sing1.47Å1.33Å
C19C23sing1.51Å1.37Å
C19H19sing1.09Å1.10Å
N20H21sing1.01Å1.00Å
N20H22sing1.01Å1.00Å
C23C28doub1.38Å1.45ÅAromatic
C23C24sing1.38Å1.45ÅAromatic
C28C30sing1.38Å1.37ÅAromatic
C28H29sing1.08Å1.08Å
C30C32doub1.40Å1.43ÅAromatic
C30H31sing1.08Å1.08Å
C24C26doub1.38Å1.37ÅAromatic
C24H25sing1.08Å1.08Å
C26C32sing1.40Å1.44ÅAromatic
C26H27sing1.08Å1.08Å
C32C33sing1.48Å1.38ÅAromatic
C33O38sing1.35Å1.36ÅAromatic
C33C34doub1.36Å1.44ÅAromatic
O38C39sing1.35Å1.36ÅAromatic
C34C36sing1.40Å1.38ÅAromatic
C34H35sing1.08Å1.08Å
C36C39doub1.36Å1.44ÅAromatic
C36H37sing1.08Å1.08Å
C39C40sing1.48Å1.38ÅAromatic
C40C45sing1.40Å1.44ÅAromatic
C40C41doub1.40Å1.43ÅAromatic
C45C47doub1.38Å1.38ÅAromatic
C45H46sing1.08Å1.08Å
C47C49sing1.38Å1.45ÅAromatic
C47H48sing1.08Å1.08Å
C41C43sing1.38Å1.37ÅAromatic
C41H42sing1.08Å1.08Å
C43C49doub1.38Å1.44ÅAromatic
C43H44sing1.08Å1.08Å
C49C50sing1.51Å1.37Å
C50N51sing1.47Å1.33Å
C50N54sing1.47Å1.33Å
C50H50sing1.09Å1.10Å
N51H52sing1.01Å1.00Å
N51H53sing1.01Å1.00Å
N54C56sing1.47Å1.46Å
N54H55sing1.01Å1.00Å
C56C65sing1.53Å1.55Å
C56C58sing1.53Å1.55Å
C56H57sing1.09Å1.10Å
C65C68sing1.53Å1.54Å
C65H67sing1.09Å1.10Å
C65H66sing1.09Å1.10Å
C68H70sing1.09Å1.10Å
C68H69sing1.09Å1.10Å
C68H71sing1.09Å1.10Å
C58C61sing1.53Å1.54Å
C58H59sing1.09Å1.10Å
C58H60sing1.09Å1.10Å
C61H64sing1.09Å1.10Å
C61H62sing1.09Å1.10Å
C61H63sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5C1H2109.5°109.5°
C5C1H4109.5°109.5°
C5C1H3109.5°109.4°
C1C5C8113.3°109.5°
C1C5H6107.3°109.4°
C1C5H7108.2°109.5°
H2C1H4109.5°109.5°
H2C1H3109.5°109.5°
H4C1H3109.5°109.5°
C8C5H6107.4°109.5°
C8C5H7108.2°109.5°
C5C8C9114.1°109.5°
C5C8N17107.4°109.5°
C5C8H16106.6°109.5°
H6C5H7112.5°109.5°
C9C8N17105.7°109.5°
C9C8H16108.3°109.4°
C8C9C10115.6°109.5°
C8C9H15107.5°109.5°
C8C9H14106.1°109.5°
N17C8H16114.9°109.5°
C8N17C19129.4°106.7°
C8N17H18103.3°106.7°
C10C9H15107.5°109.5°
C10C9H14106.1°109.5°
C9C10H11109.4°109.5°
C9C10H13109.5°109.5°
C9C10H12109.4°109.5°
H15C9H14114.4°109.4°
H11C10H13109.5°109.5°
H11C10H12109.5°109.4°
H13C10H12109.5°109.5°
C19N17H18103.3°106.7°
N17C19N20110.6°109.5°
N17C19C23124.0°109.4°
N17C19H19118.5°109.5°
N20C19C23124.8°109.5°
N20C19H19114.6°109.5°
C19N20H21109.5°106.7°
C19N20H22109.5°106.7°
C23C19H1944.9°109.5°
C19C23C28121.5°119.8°
C19C23C24121.6°119.9°
H21N20H22109.5°106.7°
C28C23C24116.8°120.3°
C23C28C30122.2°120.2°
C23C28H29118.9°119.9°
C23C24C26121.5°120.1°
C23C24H25119.3°120.0°
C30C28H29118.9°119.9°
C28C30C32119.4°119.8°
C28C30H31120.3°120.1°
C32C30H31120.3°120.1°
C30C32C26119.9°119.7°
C30C32C33122.2°120.1°
C26C24H25119.3°119.9°
C24C26C32120.1°119.8°
C24C26H27119.9°120.1°
C32C26H27120.0°120.1°
C26C32C33117.8°120.1°
C32C33O38124.1°125.8°
C32C33C34125.4°125.8°
O38C33C34110.5°108.4°
C33O38C39106.9°109.4°
C33C34C36106.1°106.9°
C33C34H35126.9°126.5°
O38C39C36110.5°108.3°
O38C39C40124.0°125.8°
C36C34H35127.0°126.6°
C34C36C39106.1°107.0°
C34C36H37126.9°126.5°
C39C36H37127.0°126.5°
C36C39C40125.4°125.9°
C39C40C45123.1°120.1°
C39C40C41117.2°120.2°
C45C40C41119.8°119.7°
C40C45C47119.5°119.8°
C40C45H46120.3°120.1°
C40C41C43119.6°119.9°
C40C41H42120.2°120.1°
C47C45H46120.3°120.1°
C45C47C49122.2°120.1°
C45C47H48118.9°119.9°
C49C47H48118.9°120.0°
C47C49C43116.1°120.4°
C47C49C50123.1°119.8°
C43C41H42120.2°120.1°
C41C43C49122.8°120.1°
C41C43H44118.6°119.9°
C49C43H44118.6°119.9°
C43C49C50120.8°119.8°
C49C50N51125.6°109.5°
C49C50N54124.9°109.5°
C49C50H5034.0°109.5°
N51C50N54109.2°109.5°
N51C50H50118.6°109.5°
C50N51H52109.4°106.7°
C50N51H53109.5°106.7°
N54C50H50122.4°109.5°
C50N54C56125.7°106.7°
C50N54H55104.4°106.7°
H52N51H53109.5°106.7°
C56N54H55104.4°106.7°
N54C56C65108.3°109.4°
N54C56C58107.4°109.4°
N54C56H57113.0°109.5°
C65C56C58113.3°109.5°
C65C56H57107.0°109.5°
C56C65C68112.8°109.5°
C56C65H67108.4°109.4°
C56C65H66107.6°109.5°
C58C56H57108.0°109.5°
C56C58C61114.0°109.5°
C56C58H59107.0°109.5°
C56C58H60108.0°109.5°
C68C65H67108.4°109.5°
C68C65H66107.6°109.5°
C65C68H70109.5°109.5°
C65C68H69109.5°109.4°
C65C68H71109.4°109.5°
H67C65H66112.1°109.5°
H70C68H69109.5°109.5°
H70C68H71109.5°109.5°
H69C68H71109.5°109.4°
C61C58H59106.9°109.4°
C61C58H60108.0°109.4°
C58C61H64109.5°109.5°
C58C61H62109.5°109.4°
C58C61H63109.5°109.5°
H59C58H60113.1°109.4°
H64C61H62109.4°109.5°
H64C61H63109.5°109.5°
H62C61H63109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5C1H2H4120.0°120.0°
C5C1H2H3120.0°120.0°
C5C1H4H3120.0°120.0°
C1C5C8H6118.3°120.0°
C1C5C8H7120.0°120.0°
C1C5H6H7119.0°120.0°
C1C5C8C993.8°174.9°
C1C5C8N17149.4°65.1°
C1C5C8H1625.7°54.9°
H2C1H4H3120.0°120.0°
H2C1C5C8138.0°50.2°
H2C1C5H619.6°69.8°
H2C1C5H7102.1°170.2°
H4C1C5C8102.0°170.2°
H4C1C5H6139.6°50.2°
H4C1C5H717.9°69.8°
H3C1C5C818.0°69.8°
H3C1C5H6100.4°170.2°
H3C1C5H7137.9°50.2°
C8C5H6H7118.9°120.0°
C5C8C9N17117.8°120.0°
C5C8C9H16118.5°120.0°
C5C8N17H16118.4°120.1°
C5C8C9C1058.8°175.0°
C5C8C9H15178.8°65.0°
C5C8C9H1458.4°55.0°
C5C8N17C19124.3°99.2°
C5C8N17H184.3°147.0°
H6C5C8C924.5°54.9°
H6C5C8N1792.3°174.9°
H6C5C8H16144.1°65.0°
H7C5C8C9146.2°65.1°
H7C5C8N1729.4°54.9°
H7C5C8H1694.2°174.9°
C9C8N17H16119.4°119.9°
C8C9C10H15120.0°120.0°
C8C9C10H14117.2°120.0°
C8C9H15H14117.5°120.0°
C8C9C10H1189.3°60.0°
C8C9C10H1330.7°180.0°
C8C9C10H12150.7°60.0°
C9C8N17C19113.5°140.8°
C9C8N17H18126.5°27.0°
N17C8C9C10176.6°65.0°
N17C8C9H1563.4°55.0°
N17C8C9H1459.4°175.0°
C8N17C19H18120.0°113.7°
C8N17C19N2043.7°100.1°
C8N17C19C23144.2°139.8°
C8N17C19H1991.5°19.9°
H16C8C9C1059.7°55.0°
H16C8C9H1560.2°175.0°
H16C8C9H14177.0°65.0°
H16C8N17C195.9°20.8°
H16C8N17H18114.1°92.9°
C10C9H15H14117.5°120.0°
C9C10H11H13120.0°120.0°
C9C10H11H12120.0°120.0°
C9C10H13H12120.0°120.0°
H15C9C10H11150.7°60.0°
H15C9C10H1389.3°60.0°
H15C9C10H1230.7°180.0°
H14C9C10H1127.9°180.0°
H14C9C10H13147.9°60.0°
H14C9C10H1292.1°60.1°
H11C10H13H12120.1°120.0°
N17C19N20C23172.0°120.0°
N17C19N20H19137.1°120.0°
N17C19C23H1998.0°120.0°
N17C19N20H2167.0°173.7°
N17C19N20H22172.9°60.0°
N17C19C23C285.1°143.4°
N17C19C23C24173.6°36.9°
H18N17C19N20163.7°146.1°
H18N17C19C2324.2°26.1°
H18N17C19H1928.5°93.9°
N20C19C23H1991.1°120.0°
C19N20H21H22120.0°113.7°
N20C19C23C28176.0°23.4°
N20C19C23C242.7°156.9°
C23C19N20H21105.0°53.8°
C23C19N20H2215.1°60.0°
C19C23C28C24178.8°179.7°
C19C23C28C30178.1°180.0°
C19C23C28H291.9°0.0°
C19C23C24C26176.4°179.7°
C19C23C24H253.5°0.3°
H19C19N20H21155.8°66.2°
H19C19N20H2235.8°180.0°
H19C19C23C2892.9°96.7°
H19C19C23C2488.4°83.1°
C23C28C30H29180.0°180.0°
C23C28C30C321.1°0.0°
C23C28C30H31178.9°180.0°
C28C23C24C262.3°0.6°
C28C23C24H25177.7°180.0°
C24C23C28C300.7°0.3°
C24C23C28H29179.3°179.8°
C23C24C26H25180.0°179.5°
C23C24C26C322.1°0.6°
C23C24C26H27177.9°179.7°
C28C30C32H31180.0°180.0°
C28C30C32C261.3°0.0°
C28C30C32C33177.2°180.0°
H29C28C30C32178.9°180.0°
H29C28C30H311.1°0.0°
C30C32C26C240.3°0.3°
C30C32C26C33178.5°179.9°
C30C32C26H27179.7°180.0°
C30C32C33O38172.7°0.1°
C30C32C33C344.7°179.7°
H31C30C32C26178.7°180.0°
H31C30C32C332.8°0.0°
C24C26C32H27180.0°179.7°
C24C26C32C33178.8°179.7°
H25C24C26C32177.9°180.0°
H25C24C26H272.1°0.3°
C26C32C33O385.8°180.0°
C26C32C33C34176.8°0.3°
H27C26C32C331.2°0.1°
C32C33O38C34177.8°179.7°
C32C33O38C39177.9°180.0°
C32C33C34C36178.5°179.9°
C32C33C34H351.5°0.2°
O38C33C34C360.8°0.4°
O38C33C34H35179.2°179.9°
C33O38C39C360.5°0.0°
C33O38C39C40177.6°180.0°
C34C33O38C390.2°0.3°
C33C34C36H35180.0°179.7°
C33C34C36C391.0°0.4°
C33C34C36H37179.0°179.8°
O38C39C36C341.0°0.2°
O38C39C36C40178.1°180.0°
O38C39C36H37179.1°180.0°
O38C39C40C45177.1°179.7°
O38C39C40C413.6°0.0°
C34C36C39H37180.0°179.8°
C34C36C39C40177.1°179.8°
H35C34C36C39179.0°180.0°
H35C34C36H371.0°0.2°
C36C39C40C455.0°0.2°
C36C39C40C41174.2°179.9°
H37C36C39C402.9°0.1°
C39C40C45C41179.2°179.7°
C39C40C45C47178.2°179.8°
C39C40C45H461.8°0.3°
C39C40C41C43179.8°180.0°
C39C40C41H420.2°0.1°
C40C45C47H46180.0°179.5°
C40C45C47C491.5°0.5°
C40C45C47H48178.5°179.7°
C45C40C41C430.5°0.3°
C45C40C41H42179.5°179.8°
C41C40C45C472.5°0.5°
C41C40C45H46177.5°180.0°
C40C41C43H42180.0°180.0°
C40C41C43C492.7°0.0°
C40C41C43H44177.3°179.9°
C45C47C49H48180.0°179.8°
C45C47C49C431.5°0.3°
C45C47C49C50177.5°179.8°
H46C45C47C49178.5°180.0°
H46C45C47H481.4°0.2°
C47C49C43C413.7°0.0°
C47C49C43C50179.1°180.0°
C47C49C43H44176.4°179.9°
C47C49C50N51175.2°150.0°
C47C49C50N542.4°30.0°
C47C49C50H5095.3°90.0°
H48C47C49C43178.5°179.9°
H48C47C49C502.5°0.0°
C41C43C49H44180.0°179.9°
C41C43C49C50175.4°180.0°
H42C41C43C49177.3°180.0°
H42C41C43H442.7°0.0°
C43C49C50N513.8°30.0°
C43C49C50N54176.6°150.0°
C43C49C50H5085.7°90.0°
H44C43C49C504.6°0.1°
C49C50N51N54173.7°120.0°
C49C50N51H5039.5°120.0°
C49C50N54H5041.0°120.0°
C49C50N51H5292.8°65.3°
C49C50N51H53147.2°179.0°
C49C50N54C5695.6°140.5°
C49C50N54H55144.4°105.8°
N51C50N54H50145.3°120.0°
C50N51H52H53120.0°113.7°
N51C50N54C5690.6°99.5°
N51C50N54H5529.4°14.2°
N54C50N51H5293.5°54.7°
N54C50N51H5326.5°59.0°
C50N54C56H55120.0°113.7°
C50N54C56C65134.8°149.4°
C50N54C56C58102.6°90.6°
C50N54C56H5716.4°29.4°
H50C50N51H5253.2°174.7°
H50C50N51H53173.2°61.0°
H50C50N54C5654.6°20.5°
H50C50N54H55174.7°134.2°
N54C56C65C58119.0°120.0°
N54C56C65H57122.1°120.0°
N54C56C58H57122.1°120.0°
N54C56C65C68143.8°65.4°
N54C56C65H6796.2°174.6°
N54C56C65H6625.3°54.6°
N54C56C58C61178.6°65.0°
N54C56C58H5963.4°175.0°
N54C56C58H6058.6°55.0°
H55N54C56C65105.2°35.6°
H55N54C56C5817.4°155.6°
H55N54C56H57136.4°84.4°
C65C56C58H57118.3°120.1°
C56C65C68H67120.0°119.9°
C56C65C68H66118.6°120.0°
C56C65H67H66118.6°120.0°
C56C65C68H7047.6°173.7°
C56C65C68H6972.4°66.3°
C56C65C68H71167.6°53.6°
C65C56C58C6161.8°175.0°
C65C56C58H5956.1°55.1°
C65C56C58H60178.1°65.0°
C58C56C65C6897.2°174.6°
C58C56C65H6722.8°54.7°
C58C56C65H66144.3°65.3°
C56C58C61H59118.0°120.0°
C56C58C61H60120.0°120.1°
C56C58H59H60118.8°120.1°
C56C58C61H6460.2°180.0°
C56C58C61H6259.8°60.0°
C56C58C61H63179.8°59.9°
H57C56C65C6821.7°54.6°
H57C56C65H67141.7°65.4°
H57C56C65H6696.8°174.6°
H57C56C58C6156.5°55.0°
H57C56C58H59174.5°65.0°
H57C56C58H6063.5°175.0°
C68C65H67H66118.6°120.1°
C65C68H70H69120.0°120.0°
C65C68H70H71120.0°120.1°
C65C68H69H71120.0°120.0°
H67C65C68H70167.6°53.8°
H67C65C68H6947.6°173.7°
H67C65C68H7172.4°66.3°
H66C65C68H7071.0°66.3°
H66C65C68H69169.0°53.7°
H66C65C68H7149.0°173.7°
H70C68H69H71120.0°120.0°
C61C58H59H60118.7°119.9°
C58C61H64H62120.0°120.0°
C58C61H64H63120.0°120.0°
C58C61H62H63120.0°119.9°
H59C58C61H64178.1°60.0°
H59C58C61H6258.2°180.0°
H59C58C61H6361.8°60.0°
H60C58C61H6459.9°59.9°
H60C58C61H62179.8°60.1°
H60C58C61H6360.2°180.0°
H64C61H62H63120.0°120.1°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon