5AA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP3	sing	1.62Å	1.49Å
P	OP2	sing	1.62Å	1.48Å
P	O5'	sing	1.62Å	1.59Å
P	OP1	doub	1.50Å	173.94Å
OP3	HOP3	sing	0.98Å	0.95Å
OP2	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.44Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'	sing	1.09Å	1.11Å
C5'	H5''	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.10Å	1.12Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	N9	sing	1.46Å	1.47Å
C1'	C2'	sing	1.53Å	1.53Å
C1'	H1'	sing	1.09Å	1.12Å
N9	C4	sing	1.37Å	1.38Å	Aromatic
N9	C8	sing	1.37Å	1.37Å	Aromatic
C4	N3	sing	1.34Å	1.35Å	Aromatic
C4	C5	doub	1.39Å	1.38Å	Aromatic
N3	C2	doub	1.35Å	1.33Å	Aromatic
C2	N1	sing	1.35Å	1.34Å	Aromatic
C2	H2	sing	1.09Å	1.10Å
N1	C6	doub	1.36Å	1.35Å	Aromatic
C6	N6	sing	1.41Å	1.35Å
C6	C5	sing	1.39Å	1.41Å	Aromatic
N6	C9	sing	1.45Å	1.46Å
N6	C10	sing	1.45Å	1.45Å
C5	N7	sing	1.37Å	1.39Å	Aromatic
N7	C8	doub	1.32Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
C9	H91	sing	1.09Å	1.12Å
C9	H92	sing	1.09Å	1.12Å
C9	H93	sing	1.09Å	1.12Å
C10	H101	sing	1.09Å	1.12Å
C10	H102	sing	1.09Å	1.12Å
C10	H103	sing	1.09Å	1.12Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C3'	sing	1.52Å	1.52Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	H1	sing	0.97Å	0.95Å
C3'	N3'	sing	1.45Å	1.42Å
C3'	H3'	sing	1.10Å	1.12Å
N3'	H3'1	sing	1.00Å	1.02Å
N3'	H3'2	sing	1.00Å	1.02Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP3	P	OP2	119.5°	103.3°
OP3	P	O5'	108.0°	103.7°
OP3	P	OP1	36.4°	115.3°
P	OP3	HOP3	119.5°	118.9°
OP2	P	O5'	108.6°	102.9°
OP2	P	OP1	98.2°	115.0°
P	OP2	HOP2	119.4°	118.9°
O5'	P	OP1	90.1°	115.0°
P	O5'	C5'	120.0°	118.4°
O5'	C5'	C4'	110.7°	108.9°
O5'	C5'	H5'	111.7°	108.9°
O5'	C5'	H5''	111.7°	108.9°
C4'	C5'	H5'	111.8°	110.4°
C4'	C5'	H5''	111.8°	110.4°
C5'	C4'	O4'	109.3°	109.7°
C5'	C4'	C3'	115.7°	114.2°
C5'	C4'	H4'	103.7°	109.1°
H5'	C5'	H5''	98.6°	109.3°
O4'	C4'	C3'	104.4°	105.1°
O4'	C4'	H4'	115.3°	107.1°
C4'	O4'	C1'	109.9°	108.4°
C3'	C4'	H4'	108.8°	111.4°
C4'	C3'	C2'	102.6°	102.0°
C4'	C3'	N3'	112.2°	113.8°
C4'	C3'	H3'	113.1°	109.0°
O4'	C1'	N9	108.4°	109.4°
O4'	C1'	C2'	107.4°	107.7°
O4'	C1'	H1'	112.7°	108.3°
N9	C1'	C2'	112.9°	113.6°
N9	C1'	H1'	107.3°	105.1°
C1'	N9	C4	126.7°	126.9°
C1'	N9	C8	127.5°	126.0°
C2'	C1'	H1'	108.3°	112.5°
C1'	C2'	O2'	109.4°	108.9°
C1'	C2'	C3'	101.4°	102.9°
C1'	C2'	H2'	115.3°	113.7°
C4	N9	C8	105.7°	107.1°
N9	C4	N3	127.4°	127.6°
N9	C4	C5	105.9°	105.2°
N9	C8	N7	113.8°	112.1°
N9	C8	H8	125.1°	122.3°
N3	C4	C5	126.7°	127.2°
C4	N3	C2	110.7°	110.4°
C4	C5	C6	117.1°	116.9°
C4	C5	N7	110.6°	110.7°
N3	C2	N1	129.3°	128.9°
N3	C2	H2	115.1°	115.6°
N1	C2	H2	115.5°	115.5°
C2	N1	C6	118.8°	117.5°
N1	C6	N6	118.3°	120.2°
N1	C6	C5	117.3°	119.1°
N6	C6	C5	124.4°	120.7°
C6	N6	C9	125.6°	120.6°
C6	N6	C10	121.7°	120.6°
C6	C5	N7	132.2°	132.4°
C9	N6	C10	112.7°	118.8°
N6	C9	H91	106.5°	110.1°
N6	C9	H92	125.6°	110.2°
N6	C9	H93	106.5°	110.2°
N6	C10	H101	107.8°	110.1°
N6	C10	H102	121.8°	110.2°
N6	C10	H103	107.8°	110.2°
C5	N7	C8	103.9°	104.9°
N7	C8	H8	121.1°	125.6°
H91	C9	H92	106.5°	108.8°
H91	C9	H93	103.0°	108.9°
H92	C9	H93	106.6°	108.7°
H101	C10	H102	107.8°	108.8°
H101	C10	H103	102.0°	108.8°
H102	C10	H103	107.8°	108.7°
O2'	C2'	C3'	111.5°	111.9°
O2'	C2'	H2'	105.9°	107.1°
C2'	O2'	H1	109.4°	106.5°
C3'	C2'	H2'	113.3°	112.6°
C2'	C3'	N3'	111.7°	114.5°
C2'	C3'	H3'	113.5°	108.3°
N3'	C3'	H3'	104.2°	109.0°
C3'	N3'	H3'1	111.2°	118.5°
C3'	N3'	H3'2	112.2°	118.4°
H3'1	N3'	H3'2	111.2°	121.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP2	O5'	124.5°	107.7°
OP3	P	OP2	OP1	31.6°	126.5°
OP3	P	O5'	OP1	32.2°	126.9°
OP3	P	OP2	HOP2	180.0°	78.4°
OP3	P	O5'	C5'	53.0°	53.1°
OP2	P	O5'	OP1	98.7°	125.7°
OP2	P	OP3	HOP3	180.0°	77.6°
OP2	P	O5'	C5'	176.0°	54.3°
O5'	P	OP3	HOP3	55.3°	175.4°
O5'	P	OP2	HOP2	55.5°	173.8°
P	O5'	C5'	C4'	138.8°	180.0°
P	O5'	C5'	H5'	13.5°	59.6°
P	O5'	C5'	H5''	95.9°	59.6°
OP1	P	OP3	HOP3	119.2°	48.7°
OP1	P	OP2	HOP2	148.4°	48.1°
OP1	P	O5'	C5'	85.3°	180.0°
O5'	C5'	C4'	H5'	125.2°	119.5°
O5'	C5'	C4'	H5''	125.3°	119.5°
O5'	C5'	H5'	H5''	117.6°	118.9°
O5'	C5'	C4'	O4'	58.4°	61.9°
O5'	C5'	C4'	C3'	59.1°	179.5°
O5'	C5'	C4'	H4'	178.2°	55.1°
C4'	C5'	H5'	H5''	117.7°	121.6°
C5'	C4'	O4'	C3'	124.4°	123.2°
C5'	C4'	O4'	H4'	116.3°	118.3°
C5'	C4'	C3'	H4'	116.3°	124.2°
C5'	C4'	O4'	C1'	144.3°	150.3°
C5'	C4'	C3'	C2'	155.4°	157.5°
C5'	C4'	C3'	N3'	84.7°	78.6°
C5'	C4'	C3'	H3'	32.8°	43.2°
H5'	C5'	C4'	O4'	66.9°	57.6°
H5'	C5'	C4'	C3'	175.7°	60.0°
H5'	C5'	C4'	H4'	56.6°	174.6°
H5''	C5'	C4'	O4'	176.4°	178.5°
H5''	C5'	C4'	C3'	66.2°	60.9°
H5''	C5'	C4'	H4'	52.9°	64.5°
O4'	C4'	C3'	H4'	123.5°	115.6°
C4'	O4'	C1'	N9	118.6°	129.7°
C4'	O4'	C1'	C2'	3.7°	5.7°
C4'	O4'	C1'	H1'	122.8°	116.3°
O4'	C4'	C3'	C2'	35.2°	37.3°
O4'	C4'	C3'	N3'	155.1°	161.1°
O4'	C4'	C3'	H3'	87.4°	77.0°
C3'	C4'	O4'	C1'	19.9°	27.1°
C4'	C3'	C2'	C1'	36.3°	32.7°
C4'	C3'	C2'	O2'	80.1°	84.0°
C4'	C3'	C2'	N3'	120.3°	123.3°
C4'	C3'	C2'	H3'	122.3°	114.9°
C4'	C3'	C2'	H2'	160.5°	155.4°
C4'	C3'	N3'	H3'	122.6°	121.8°
C4'	C3'	N3'	H3'1	54.7°	170.9°
C4'	C3'	N3'	H3'2	180.0°	4.3°
H4'	C4'	O4'	C1'	99.4°	91.5°
H4'	C4'	C3'	C2'	88.3°	78.3°
H4'	C4'	C3'	N3'	31.6°	45.6°
H4'	C4'	C3'	H3'	149.0°	167.4°
O4'	C1'	N9	C2'	118.9°	120.4°
O4'	C1'	N9	H1'	122.0°	116.1°
O4'	C1'	C2'	H1'	122.0°	119.3°
O4'	C1'	N9	C4	131.1°	146.0°
O4'	C1'	N9	C8	49.0°	33.9°
O4'	C1'	C2'	O2'	92.5°	101.1°
O4'	C1'	C2'	C3'	25.4°	17.7°
O4'	C1'	C2'	H2'	148.3°	139.7°
N9	C1'	C2'	H1'	118.6°	119.3°
C1'	N9	C4	C8	179.9°	179.9°
C1'	N9	C4	N3	0.3°	0.1°
C1'	N9	C4	C5	179.7°	180.0°
C1'	N9	C8	N7	180.0°	180.0°
C1'	N9	C8	H8	0.0°	0.0°
N9	C1'	C2'	O2'	148.1°	137.5°
N9	C1'	C2'	C3'	94.0°	103.7°
N9	C1'	C2'	H2'	28.8°	18.3°
C2'	C1'	N9	C4	110.0°	93.6°
C2'	C1'	N9	C8	69.8°	86.5°
C1'	C2'	O2'	C3'	111.4°	113.0°
C1'	C2'	O2'	H2'	124.9°	123.2°
C1'	C2'	C3'	H2'	124.2°	122.7°
C1'	C2'	O2'	H1	180.0°	44.1°
C1'	C2'	C3'	N3'	156.6°	156.0°
C1'	C2'	C3'	H3'	86.1°	82.2°
H1'	C1'	N9	C4	9.1°	29.9°
H1'	C1'	N9	C8	171.0°	150.0°
H1'	C1'	C2'	O2'	29.4°	18.2°
H1'	C1'	C2'	C3'	147.4°	137.0°
H1'	C1'	C2'	H2'	89.8°	101.0°
N9	C4	N3	C5	180.0°	179.9°
N9	C4	N3	C2	180.0°	180.0°
N9	C4	C5	C6	179.5°	180.0°
N9	C4	C5	N7	0.4°	0.0°
C4	N9	C8	N7	0.1°	0.0°
C4	N9	C8	H8	179.9°	180.0°
C8	N9	C4	N3	179.9°	180.0°
C8	N9	C4	C5	0.2°	0.0°
N9	C8	N7	C5	0.3°	0.0°
N9	C8	N7	H8	180.0°	180.0°
C4	N3	C2	N1	0.3°	0.0°
C4	N3	C2	H2	179.8°	180.0°
N3	C4	C5	C6	0.5°	0.0°
N3	C4	C5	N7	179.7°	180.0°
C5	C4	N3	C2	0.1°	0.0°
C4	C5	C6	N1	0.8°	0.1°
C4	C5	C6	N6	178.8°	180.0°
C4	C5	C6	N7	179.8°	180.0°
C4	C5	N7	C8	0.4°	0.0°
N3	C2	N1	H2	180.0°	180.0°
N3	C2	N1	C6	0.1°	0.0°
C2	N1	C6	N6	179.0°	180.0°
C2	N1	C6	C5	0.7°	0.1°
H2	C2	N1	C6	179.9°	179.9°
N1	C6	N6	C5	179.6°	180.0°
N1	C6	N6	C9	178.9°	180.0°
N1	C6	N6	C10	0.2°	0.6°
N1	C6	C5	N7	179.4°	179.9°
C6	N6	C9	C10	179.2°	179.4°
N6	C6	C5	N7	1.1°	0.0°
C6	N6	C9	H91	54.8°	70.0°
C6	N6	C9	H92	180.0°	50.0°
C6	N6	C9	H93	54.7°	169.9°
C6	N6	C10	H101	54.7°	68.3°
C6	N6	C10	H102	180.0°	171.7°
C6	N6	C10	H103	54.7°	51.7°
C5	C6	N6	C9	0.6°	0.0°
C5	C6	N6	C10	179.7°	179.3°
C6	C5	N7	C8	179.4°	180.0°
N6	C9	H91	H92	136.1°	120.8°
N6	C9	H91	H93	111.9°	120.9°
N6	C9	H92	H93	125.3°	120.8°
C9	N6	C10	H101	126.1°	111.1°
C9	N6	C10	H102	0.8°	8.9°
C9	N6	C10	H103	124.5°	128.9°
C10	N6	C9	H91	124.4°	109.4°
C10	N6	C9	H92	0.8°	130.7°
C10	N6	C9	H93	126.1°	10.7°
N6	C10	H101	H102	133.2°	120.9°
N6	C10	H101	H103	113.4°	120.8°
N6	C10	H102	H103	125.3°	120.9°
C5	N7	C8	H8	179.7°	180.0°
H91	C9	H92	H93	109.5°	118.4°
H101	C10	H102	H103	109.5°	118.3°
O2'	C2'	C3'	H2'	119.4°	120.6°
O2'	C2'	C3'	N3'	40.2°	39.3°
O2'	C2'	C3'	H3'	157.5°	161.1°
C3'	C2'	O2'	H1	68.6°	157.1°
C2'	C3'	N3'	H3'	122.9°	121.4°
C2'	C3'	N3'	H3'1	59.7°	54.1°
C2'	C3'	N3'	H3'2	65.5°	112.5°
H2'	C2'	O2'	H1	55.1°	79.1°
H2'	C2'	C3'	N3'	79.3°	81.3°
H2'	C2'	C3'	H3'	38.1°	40.5°
C3'	N3'	H3'1	H3'2	125.8°	166.2°
H3'	C3'	N3'	H3'1	177.4°	67.2°
H3'	C3'	N3'	H3'2	57.4°	126.1°

Definition date:	2004-12-29
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	1VQ7