Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

56B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N2C2sing1.37Å1.33Å
C2N1sing1.36Å1.37Å
C2N3doub1.31Å1.34Å
N1C6sing1.35Å1.38Å
N3C4sing1.34Å1.35Å
C6O6doub1.22Å1.23Å
C6C5sing1.41Å1.41Å
C4C5doub1.40Å1.41ÅAromatic
C4N9sing1.36Å1.37ÅAromatic
C5C7sing1.46Å1.45ÅAromatic
O4'C1'sing1.44Å1.42Å
O4'C4'sing1.44Å1.45Å
O3'C3'sing1.43Å1.43Å
C1'N9sing1.47Å1.47Å
C1'C2'sing1.54Å1.53Å
N9C8sing1.37Å1.38ÅAromatic
C4'C3'sing1.55Å1.52Å
C4'C5'sing1.53Å1.51Å
C7C8doub1.34Å1.38ÅAromatic
C7C9sing1.51Å1.52Å
O2'C2'sing1.43Å1.41Å
C3'C2'sing1.55Å1.52Å
N10C9sing1.47Å1.49Å
N10C10sing1.47Å1.47Å
C12C13sing1.51Å1.51Å
C12O12sing1.43Å1.43Å
C12C11sing1.55Å1.55Å
C13C14doub1.31Å1.37Å
C14C10sing1.51Å1.54Å
C5'O5'sing1.43Å1.42Å
C10C11sing1.55Å1.53Å
C11O11sing1.43Å1.43Å
OP2Psing1.61Å1.48Å
O5'Psing1.61Å1.59Å
POP1doub1.48Å1.48Å
C2'H1sing1.09Å1.10Å
O2'H2sing0.97Å0.95Å
C1'H3sing1.09Å1.10Å
N10H4sing1.01Å1.00Å
O11H6sing0.97Å0.95Å
C8H7sing1.08Å1.08Å
O12H8sing0.97Å0.95Å
N2H9sing0.97Å1.00Å
N2H10sing0.97Å1.00Å
C9H11sing1.09Å1.10Å
C9H12sing1.09Å1.10Å
N1H13sing0.97Å1.00Å
C10H14sing1.09Å1.10Å
C11H15sing1.09Å1.10Å
OP2H16sing0.97Å0.95Å
C12H17sing1.09Å1.10Å
C13H18sing1.08Å1.08Å
C14H21sing1.08Å1.08Å
O3'H23sing0.97Å0.95Å
C4'H24sing1.09Å1.10Å
C5'H25sing1.09Å1.10Å
C5'H26sing1.09Å1.10Å
C3'H27sing1.09Å1.10Å
POP3sing1.61Å45.27Å
OP3HOP3sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2C2N1116.9°118.9°
N2C2N3119.6°118.9°
C2N2H9120.0°120.0°
C2N2H10120.0°120.0°
N1C2N3123.4°122.1°
C2N1C6125.4°120.2°
C2N1H13117.3°119.9°
C2N3C4113.3°121.2°
N1C6O6119.0°120.9°
N1C6C5112.2°118.2°
C6N1H13117.3°119.9°
N3C4C5126.1°119.2°
N3C4N9125.9°133.6°
O6C6C5128.8°120.9°
C6C5C4119.6°119.0°
C6C5C7132.8°134.7°
C5C4N9108.0°107.2°
C4C5C7107.5°106.3°
C4N9C1'124.6°125.0°
C4N9C8108.8°110.1°
C5C7C8105.2°106.8°
C5C7C9124.1°126.6°
C1'O4'C4'109.4°105.3°
O4'C1'N9108.5°110.4°
O4'C1'C2'105.8°104.9°
O4'C1'H3109.5°110.4°
O4'C4'C3'105.3°104.8°
O4'C4'C5'108.2°110.4°
O4'C4'H24110.0°110.4°
O3'C3'C4'109.1°110.5°
O3'C3'C2'107.5°110.7°
C3'O3'H23109.5°114.0°
O3'C3'H27113.8°110.4°
N9C1'C2'115.9°110.4°
C1'N9C8126.6°124.9°
N9C1'H3108.8°110.3°
C1'C2'O2'111.8°110.5°
C1'C2'C3'100.3°104.2°
C1'C2'H1109.4°110.5°
C2'C1'H3108.1°110.4°
N9C8C7110.5°109.6°
N9C8H7124.7°125.1°
C3'C4'C5'114.9°110.4°
C4'C3'C2'101.2°103.9°
C3'C4'H24109.0°110.3°
C4'C3'H27112.2°110.5°
C4'C5'O5'111.6°109.5°
C5'C4'H24109.2°110.4°
C4'C5'H25108.9°109.5°
C4'C5'H26108.9°109.5°
C8C7C9130.7°126.6°
C7C8H7124.7°125.3°
C7C9N10116.1°109.5°
C7C9H11107.8°109.5°
C7C9H12107.8°109.5°
O2'C2'C3'114.3°110.5°
O2'C2'H1111.0°110.5°
C2'O2'H2109.5°114.0°
C3'C2'H1109.5°110.5°
C2'C3'H27112.3°110.6°
C9N10C10114.3°111.0°
C9N10H4108.2°111.0°
N10C9H11107.8°109.5°
N10C9H12107.8°109.5°
N10C10C14112.9°110.4°
N10C10C11111.4°110.4°
C10N10H4108.2°111.0°
N10C10H14110.4°110.4°
C13C12O12110.7°110.4°
C13C12C11104.6°104.7°
C12C13C14109.6°111.1°
C13C12H17108.6°110.4°
C12C13H18125.2°124.5°
O12C12C11115.0°110.4°
C12O12H8109.5°114.0°
O12C12H17109.6°110.4°
C12C11C10104.5°101.4°
C12C11O11111.5°111.0°
C12C11H15109.6°111.1°
C11C12H17108.0°110.5°
C13C14C10111.4°111.1°
C14C13H18125.2°124.4°
C13C14H21124.3°124.4°
C14C10C11102.9°104.7°
C14C10H14109.4°110.4°
C10C14H21124.3°124.4°
C5'O5'P121.0°123.0°
O5'C5'H25108.9°109.5°
O5'C5'H26109.0°109.5°
C10C11O11109.8°111.0°
C11C10H14109.6°110.4°
C10C11H15109.9°111.0°
C11O11H6109.5°114.0°
O11C11H15111.4°110.9°
OP2PO5'108.8°109.5°
OP2POP1119.8°109.4°
POP2H16109.5°114.0°
OP2POP384.3°109.5°
O5'POP1108.8°109.5°
O5'POP3118.0°109.5°
OP1POP336.4°109.4°
H9N2H10120.0°120.0°
H11C9H12109.5°109.5°
H25C5'H26109.5°109.4°
POP3HOP390.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2C2N1N3179.7°179.9°
N2C2N1C6179.5°180.0°
N2C2N3C4179.3°179.8°
C2N2H9H10180.0°179.9°
N2C2N1H130.5°0.3°
C2N1C6H13180.0°179.8°
N1C2N3C40.4°0.1°
C2N1C6O6179.8°179.8°
C2N1C6C50.1°0.2°
N1C2N2H9179.7°0.1°
N1C2N2H100.3°180.0°
N3C2N1C60.2°0.0°
C2N3C4C50.2°0.0°
C2N3C4N9179.3°179.5°
N3C2N2H90.0°180.0°
N3C2N2H10180.0°0.1°
N3C2N1H13179.8°179.8°
N1C6O6C5179.9°180.0°
N1C6C5C40.3°0.3°
N1C6C5C7179.3°180.0°
N3C4C5C60.1°0.2°
N3C4C5N9179.6°179.7°
N3C4C5C7179.5°179.9°
N3C4N9C1'1.1°0.2°
N3C4N9C8179.6°180.0°
O6C6C5C4179.6°179.7°
O6C6C5C70.8°0.0°
O6C6N1H130.2°0.0°
C6C5C4C7179.7°179.8°
C6C5C4N9179.7°179.8°
C6C5C7C8179.7°180.0°
C6C5C7C90.2°0.0°
C5C6N1H13179.9°180.0°
C5C4N9C1'178.4°179.8°
C5C4N9C80.1°0.4°
C4C5C7C80.1°0.3°
C4C5C7C9179.4°179.8°
N9C4C5C70.0°0.4°
C4N9C1'O4'107.3°159.8°
C4N9C1'C8178.2°179.7°
C4N9C1'C2'133.9°84.7°
C4N9C8C70.1°0.2°
C4N9C1'H311.9°37.5°
C4N9C8H7179.9°179.8°
C5C7C8N90.1°0.1°
C5C7C8C9179.4°180.0°
C5C7C9N1016.2°80.0°
C5C7C8H7179.9°180.0°
C5C7C9H11104.8°40.1°
C5C7C9H12137.1°160.0°
O4'C1'N9C2'118.8°115.4°
O4'C1'N9H3119.2°122.3°
O4'C1'C2'H3117.3°118.9°
O4'C1'N9C870.9°20.4°
C1'O4'C4'C3'10.4°40.4°
C1'O4'C4'C5'113.0°159.3°
O4'C1'C2'O2'158.0°142.7°
O4'C1'C2'C3'36.5°24.0°
O4'C1'C2'H178.6°94.6°
C1'O4'C4'H24127.7°78.3°
O4'C4'C3'O3'80.4°142.6°
C4'O4'C1'N9141.6°159.4°
C4'O4'C1'C2'16.6°40.5°
O4'C4'C3'C5'119.0°118.9°
O4'C4'C3'H24118.1°118.8°
O4'C4'C5'H24119.8°122.3°
O4'C4'C3'C2'32.8°23.9°
O4'C4'C5'O5'157.1°66.5°
C4'O4'C1'H399.7°78.4°
O4'C4'C5'H2582.6°53.5°
O4'C4'C5'H2636.8°173.5°
O4'C4'C3'H27152.6°94.8°
O3'C3'C2'C1'73.2°118.5°
O3'C3'C4'C2'113.1°118.8°
O3'C3'C4'H27127.0°122.5°
O3'C3'C4'C5'160.7°98.5°
O3'C3'C2'O2'46.6°0.2°
O3'C3'C2'H27125.9°122.8°
O3'C3'C2'H1171.9°122.8°
O3'C3'C4'H2437.7°23.8°
N9C1'C2'H3122.4°122.2°
C1'N9C8C7178.3°180.0°
N9C1'C2'O2'81.7°98.4°
N9C1'C2'C3'156.8°142.9°
N9C1'C2'H141.7°24.2°
C1'N9C8H71.7°0.0°
C2'C1'N9C847.9°95.0°
C1'C2'C3'C4'41.1°0.1°
C1'C2'O2'C3'113.1°114.8°
C1'C2'O2'H1122.4°122.6°
C1'C2'C3'H1114.9°118.7°
C1'C2'O2'H2180.0°178.1°
C1'C2'C3'H27160.9°118.7°
N9C8C7H7180.0°180.0°
N9C8C7C9179.3°180.0°
C8N9C1'H3169.9°142.7°
C3'C4'C5'H24122.9°122.2°
C4'C3'C2'O2'160.9°118.8°
C4'C3'C2'H27119.8°118.6°
C3'C4'C5'O5'85.6°178.1°
C4'C3'C2'H173.8°118.6°
C4'C3'O3'H23180.0°180.0°
C3'C4'C5'H2534.7°61.9°
C3'C4'C5'H26154.1°58.0°
C5'C4'C3'C2'86.2°142.7°
C4'C5'O5'H25120.3°120.0°
C4'C5'O5'H26120.3°120.0°
C4'C5'O5'P144.7°180.0°
C4'C5'H25H26119.0°120.0°
C5'C4'C3'H2733.7°24.0°
C8C7C9N10164.5°100.0°
C8C7C9H1174.5°140.0°
C8C7C9H1243.5°20.0°
C7C9N10H11121.0°120.0°
C7C9N10H12121.0°120.0°
C7C9N10C10164.1°180.0°
C7C9N10H443.4°56.1°
C9C7C8H70.7°0.0°
C7C9H11H12117.0°120.0°
O2'C2'C3'H1125.3°122.6°
O2'C2'C1'H340.7°23.8°
O2'C2'C3'H2779.3°122.6°
C3'C2'O2'H266.9°63.3°
C3'C2'C1'H380.8°94.9°
C2'C3'O3'H2371.1°65.4°
C2'C3'C4'H24150.8°95.0°
C9N10C10H4120.7°123.9°
C9N10C10C14158.7°89.7°
C9N10C10C1186.1°155.0°
N10C9H11H12117.0°120.0°
C9N10C10H1435.9°32.7°
N10C10C11C1296.8°143.4°
N10C10C14C13104.6°135.2°
N10C10C14C11120.2°118.8°
N10C10C14H14123.3°122.3°
N10C10C11H14122.4°122.3°
N10C10C11O11143.6°98.5°
C10N10C9H1175.0°60.0°
C10N10C9H1243.1°60.0°
N10C10C11H1520.7°25.3°
N10C10C14H2175.4°44.8°
C13C12O12C11118.3°115.3°
C13C12O12H17119.7°122.3°
C13C12C11H17115.6°118.8°
C12C13C14H18180.0°180.0°
C12C13C14C100.6°0.0°
C13C12C11C1025.4°24.6°
C13C12C11O1193.1°142.7°
C13C12O12H8180.0°61.5°
C13C12C11H15143.1°93.4°
C12C13C14H21179.4°180.0°
O12C12C11H17122.8°122.4°
O12C12C13C14140.9°102.4°
O12C12C11C10147.1°94.1°
O12C12C11O1128.6°23.9°
O12C12C11H1595.3°147.8°
O12C12C13H1839.1°77.6°
C11C12C13C1416.4°16.4°
C12C11C10C1424.5°24.6°
C12C11C10O11119.7°118.0°
C12C11C10H15117.5°118.1°
C12C11O11H15122.8°124.0°
C12C11O11H6180.0°68.0°
C11C12O12H861.7°176.8°
C12C11C10H14140.8°94.2°
C11C12C13H18163.6°163.5°
C13C14C10H21180.0°180.0°
C13C14C10C1115.6°16.4°
C13C14C10H14132.0°102.4°
C14C13C12H1798.7°135.4°
C14C10C11H14116.3°118.9°
C14C10C11O1195.2°142.7°
C14C10N10H438.0°34.3°
C14C10C11H15142.0°93.5°
C10C14C13H18179.4°180.0°
C5'O5'POP239.4°175.0°
C5'O5'POP192.8°55.0°
O5'C5'C4'H2437.3°55.8°
O5'C5'H25H26119.1°120.0°
C5'O5'POP354.2°64.9°
C10C11O11H15121.9°123.9°
C11C10N10H4153.2°81.0°
C10C11O11H664.7°180.0°
C10C11C12H1790.1°143.5°
C11C10C14H21164.4°163.6°
O11C11C10H1421.1°23.8°
O11C11C12H17151.4°98.5°
OP2PO5'OP1132.1°120.0°
OP2PO5'OP393.6°120.0°
OP2POP1OP314.0°120.0°
OP2POP3HOP390.0°60.1°
O5'POP1OP3112.0°120.1°
O5'POP2H16126.0°180.0°
PO5'C5'H2595.0°60.0°
PO5'C5'H2624.3°60.0°
O5'POP3HOP390.0°60.0°
OP1POP2H160.0°60.0°
OP1POP3HOP390.0°180.0°
H1C2'O2'H257.6°59.3°
H1C2'C1'H3164.1°146.5°
H1C2'C3'H2746.0°0.0°
H4N10C9H11164.3°63.9°
H4N10C9H1277.6°176.1°
H4N10C10H1484.8°156.6°
H6O11C11H1557.2°56.0°
H8O12C12H1760.2°60.8°
H14C10C11H15101.7°147.7°
H14C10C14H2148.0°77.6°
H15C11C12H1727.6°25.4°
H16OP2POP38.3°59.9°
H17C12C13H1881.2°44.6°
H18C13C14H210.6°0.0°
H23O3'C3'H2753.9°57.5°
H24C4'C5'H25157.6°175.9°
H24C4'C5'H2683.0°64.2°
H24C4'C3'H2789.3°146.3°

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon