55T

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C2	doub	1.22Å	1.21Å
N3	C2	sing	1.33Å	1.35Å
N3	C4	doub	1.33Å	1.37Å
C2	N1	sing	1.35Å	1.40Å
O2'	C2'	sing	1.43Å	1.43Å
C1'	N1	sing	1.47Å	1.49Å
C1'	C2'	sing	1.55Å	1.53Å
C1'	O4'	sing	1.44Å	1.44Å
N1	C6	sing	1.36Å	1.34Å
C4	N4	sing	1.38Å	1.36Å
C4	C5	sing	1.41Å	1.40Å
C2'	C3'	sing	1.55Å	1.51Å
O4'	C4'	sing	1.44Å	1.41Å
C6	C5	doub	1.35Å	1.39Å
C3'	C4'	sing	1.54Å	1.52Å
C3'	O3'	sing	1.43Å	1.43Å
C4'	C5'	sing	1.53Å	1.51Å
C5'	O5'	sing	1.43Å	1.41Å
O5'	P	sing	1.61Å	1.61Å
O12	P9	doub	1.48Å	1.49Å
C15	C14	doub	1.38Å	1.39Å	Aromatic
C15	C16	sing	1.38Å	1.38Å	Aromatic
C14	C13	sing	1.38Å	1.41Å	Aromatic
O1P	P	sing	1.61Å	1.61Å
O1P	C8	sing	1.43Å	1.40Å
P	O2P	doub	1.48Å	1.53Å
P	O3P	sing	1.61Å	1.48Å
C16	C17	doub	1.39Å	1.41Å	Aromatic
P9	C8	sing	1.82Å	1.83Å
P9	O11	sing	1.61Å	1.52Å
P9	O10	sing	1.61Å	1.53Å
C13	C8	sing	1.51Å	1.49Å
C13	C18	doub	1.38Å	1.41Å	Aromatic
C17	C18	sing	1.39Å	1.43Å	Aromatic
C17	N19	sing	1.40Å	1.38Å
N19	C32	sing	1.35Å	1.34Å
C32	O33	doub	1.21Å	1.21Å
C32	C34	sing	1.51Å	1.53Å
O11	H1	sing	0.97Å	0.95Å
N4	H2	sing	0.97Å	1.00Å
N4	H3	sing	0.97Å	1.00Å
C5	H4	sing	1.08Å	1.08Å
C6	H5	sing	1.08Å	1.08Å
C1'	H6	sing	1.09Å	1.10Å
C2'	H7	sing	1.09Å	1.10Å
O2'	H8	sing	0.97Å	0.95Å
C3'	H9	sing	1.09Å	1.10Å
O3'	H10	sing	0.97Å	0.95Å
C4'	H11	sing	1.09Å	1.10Å
C5'	H12	sing	1.09Å	1.10Å
C5'	H13	sing	1.09Å	1.10Å
O3P	H14	sing	0.97Å	0.95Å
C8	H15	sing	1.09Å	1.10Å
O10	H16	sing	0.97Å	0.95Å
C14	H17	sing	1.08Å	1.08Å
C15	H18	sing	1.08Å	1.08Å
C16	H19	sing	1.08Å	1.08Å
C18	H20	sing	1.08Å	1.08Å
N19	H21	sing	0.97Å	1.00Å
C34	H22	sing	1.09Å	1.10Å
C34	H23	sing	1.09Å	1.10Å
C34	H24	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C2	N3	117.9°	119.5°
O2	C2	N1	119.1°	119.4°
C2	N3	C4	118.5°	120.7°
N3	C2	N1	122.9°	121.1°
N3	C4	N4	120.3°	120.2°
N3	C4	C5	120.5°	119.6°
C2	N1	C1'	117.3°	119.8°
C2	N1	C6	117.9°	120.4°
O2'	C2'	C1'	109.9°	110.9°
O2'	C2'	C3'	113.7°	110.9°
O2'	C2'	H7	111.3°	110.8°
C2'	O2'	H8	109.5°	114.0°
N1	C1'	C2'	120.5°	110.6°
N1	C1'	O4'	105.2°	110.6°
C1'	N1	C6	124.5°	119.8°
N1	C1'	H6	107.4°	110.5°
C2'	C1'	O4'	108.2°	103.5°
C1'	C2'	C3'	101.6°	102.1°
C2'	C1'	H6	107.0°	110.6°
C1'	C2'	H7	109.9°	110.9°
C1'	O4'	C4'	108.7°	107.0°
O4'	C1'	H6	108.0°	110.8°
N1	C6	C5	121.5°	119.3°
N1	C6	H5	119.3°	120.4°
N4	C4	C5	119.2°	120.2°
C4	N4	H2	120.0°	120.0°
C4	N4	H3	120.0°	120.0°
C4	C5	C6	118.6°	119.0°
C4	C5	H4	120.7°	120.5°
C2'	C3'	C4'	103.1°	104.2°
C2'	C3'	O3'	112.4°	110.5°
C3'	C2'	H7	110.1°	110.9°
C2'	C3'	H9	108.9°	110.5°
O4'	C4'	C3'	107.1°	107.3°
O4'	C4'	C5'	108.2°	109.9°
O4'	C4'	H11	109.3°	109.8°
C6	C5	H4	120.7°	120.5°
C5	C6	H5	119.2°	120.3°
C4'	C3'	O3'	113.3°	110.5°
C3'	C4'	C5'	116.4°	109.9°
C4'	C3'	H9	108.8°	110.5°
C3'	C4'	H11	107.8°	109.9°
O3'	C3'	H9	110.0°	110.5°
C3'	O3'	H10	109.5°	114.0°
C4'	C5'	O5'	108.1°	109.5°
C5'	C4'	H11	107.9°	110.0°
C4'	C5'	H12	109.8°	109.5°
C4'	C5'	H13	109.8°	109.5°
C5'	O5'	P	122.2°	123.0°
O5'	C5'	H12	109.8°	109.5°
O5'	C5'	H13	109.8°	109.5°
O5'	P	O1P	101.4°	109.5°
O5'	P	O2P	108.9°	109.5°
O5'	P	O3P	109.2°	109.4°
O12	P9	C8	106.3°	109.5°
O12	P9	O11	118.0°	109.5°
O12	P9	O10	106.5°	109.5°
C14	C15	C16	121.0°	120.1°
C15	C14	C13	118.6°	120.1°
C15	C14	H17	120.7°	119.9°
C14	C15	H18	119.5°	120.0°
C15	C16	C17	122.2°	119.9°
C16	C15	H18	119.5°	119.9°
C15	C16	H19	118.9°	120.1°
C14	C13	C8	119.7°	119.9°
C14	C13	C18	120.7°	120.1°
C13	C14	H17	120.7°	119.9°
P	O1P	C8	123.2°	123.0°
O1P	P	O2P	109.9°	109.5°
O1P	P	O3P	112.2°	109.5°
O1P	C8	P9	108.4°	109.5°
O1P	C8	C13	111.2°	109.5°
O1P	C8	H15	111.7°	109.5°
O2P	P	O3P	114.4°	109.5°
P	O3P	H14	109.5°	114.0°
C16	C17	C18	117.1°	119.8°
C16	C17	N19	115.7°	120.1°
C17	C16	H19	118.9°	120.0°
C8	P9	O11	108.5°	109.5°
C8	P9	O10	108.7°	109.5°
P9	C8	C13	108.3°	109.5°
P9	C8	H15	106.5°	109.4°
O11	P9	O10	108.6°	109.5°
P9	O11	H1	109.5°	114.0°
P9	O10	H16	109.5°	114.0°
C8	C13	C18	119.6°	120.0°
C13	C8	H15	110.5°	109.4°
C13	C18	C17	120.4°	119.9°
C13	C18	H20	119.8°	120.1°
C18	C17	N19	127.1°	120.1°
C17	C18	H20	119.8°	120.0°
C17	N19	C32	129.5°	120.0°
C17	N19	H21	115.3°	120.0°
N19	C32	O33	122.7°	120.0°
N19	C32	C34	118.8°	120.0°
C32	N19	H21	115.2°	120.0°
O33	C32	C34	118.5°	120.0°
C32	C34	H22	109.5°	109.5°
C32	C34	H23	109.5°	109.5°
C32	C34	H24	109.5°	109.5°
H2	N4	H3	120.0°	120.0°
H12	C5'	H13	109.5°	109.4°
H22	C34	H23	109.5°	109.5°
H22	C34	H24	109.4°	109.5°
H23	C34	H24	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C2	N3	N1	178.3°	179.9°
O2	C2	N3	C4	179.3°	180.0°
O2	C2	N1	C1'	4.4°	0.4°
O2	C2	N1	C6	179.2°	180.0°
N3	C2	N1	C1'	173.8°	179.7°
N3	C2	N1	C6	0.9°	0.1°
C2	N3	C4	N4	178.9°	180.0°
C2	N3	C4	C5	2.4°	0.0°
C4	N3	C2	N1	2.4°	0.0°
N3	C4	N4	C5	178.8°	180.0°
N3	C4	C5	C6	0.9°	0.0°
N3	C4	N4	H2	0.0°	0.1°
N3	C4	N4	H3	180.0°	180.0°
N3	C4	C5	H4	179.1°	179.9°
C2	N1	C1'	C6	174.3°	179.6°
C2	N1	C1'	C2'	97.3°	64.7°
C2	N1	C1'	O4'	140.4°	49.4°
C2	N1	C6	C5	0.7°	0.0°
C2	N1	C6	H5	179.3°	179.9°
C2	N1	C1'	H6	25.5°	172.5°
O2'	C2'	C1'	N1	141.2°	86.3°
O2'	C2'	C1'	C3'	120.7°	118.2°
O2'	C2'	C1'	H7	122.8°	123.6°
O2'	C2'	C1'	O4'	97.9°	155.2°
O2'	C2'	C3'	H7	125.6°	123.6°
O2'	C2'	C3'	C4'	86.1°	139.1°
O2'	C2'	C3'	O3'	36.3°	20.4°
O2'	C2'	C1'	H6	18.3°	36.5°
O2'	C2'	C3'	H9	158.5°	102.2°
N1	C1'	C2'	O4'	120.9°	118.5°
N1	C1'	C2'	H6	122.9°	122.8°
N1	C1'	O4'	H6	114.5°	122.9°
N1	C1'	C2'	C3'	98.1°	155.5°
N1	C1'	O4'	C4'	126.5°	158.5°
C1'	N1	C6	C5	175.0°	179.7°
C1'	N1	C6	H5	5.0°	0.3°
N1	C1'	C2'	H7	18.4°	37.3°
C2'	C1'	O4'	H6	115.5°	118.6°
C2'	C1'	N1	C6	88.4°	115.0°
C1'	C2'	C3'	H7	116.4°	118.2°
C2'	C1'	O4'	C4'	3.5°	40.0°
C1'	C2'	C3'	C4'	31.9°	20.9°
C1'	C2'	C3'	O3'	154.3°	97.8°
C1'	C2'	O2'	H8	180.0°	179.9°
C1'	C2'	C3'	H9	83.5°	139.6°
O4'	C1'	N1	C6	33.9°	131.0°
O4'	C1'	C2'	C3'	22.7°	37.0°
C1'	O4'	C4'	C3'	17.7°	26.5°
C1'	O4'	C4'	C5'	143.9°	145.9°
O4'	C1'	C2'	H7	139.3°	81.2°
C1'	O4'	C4'	H11	98.9°	92.9°
N1	C6	C5	C4	0.7°	0.0°
N1	C6	C5	H5	180.0°	180.0°
N1	C6	C5	H4	179.3°	179.9°
C6	N1	C1'	H6	148.9°	7.9°
N4	C4	C5	C6	179.6°	180.0°
C4	N4	H2	H3	180.0°	180.0°
N4	C4	C5	H4	0.3°	0.1°
C4	C5	C6	H4	180.0°	179.9°
C5	C4	N4	H2	178.8°	179.9°
C5	C4	N4	H3	1.2°	0.0°
C4	C5	C6	H5	179.3°	180.0°
C2'	C3'	C4'	O4'	31.8°	2.0°
C2'	C3'	C4'	O3'	121.8°	118.7°
C2'	C3'	C4'	H9	115.5°	118.7°
C2'	C3'	O3'	H9	121.5°	122.7°
C2'	C3'	C4'	C5'	152.9°	121.5°
C3'	C2'	C1'	H6	138.9°	81.6°
C3'	C2'	O2'	H8	66.9°	67.3°
C2'	C3'	O3'	H10	128.0°	61.4°
C2'	C3'	C4'	H11	85.7°	117.4°
O4'	C4'	C3'	C5'	121.2°	119.4°
O4'	C4'	C3'	H11	117.5°	119.4°
O4'	C4'	C3'	O3'	153.6°	120.7°
O4'	C4'	C5'	H11	118.2°	121.0°
O4'	C4'	C5'	O5'	66.8°	66.4°
C4'	O4'	C1'	H6	119.0°	78.5°
O4'	C4'	C3'	H9	83.7°	116.7°
O4'	C4'	C5'	H12	53.0°	173.6°
O4'	C4'	C5'	H13	173.4°	53.6°
C4'	C3'	O3'	H9	122.1°	122.6°
C3'	C4'	C5'	H11	121.2°	121.1°
C3'	C4'	C5'	O5'	53.8°	175.7°
C4'	C3'	C2'	H7	148.3°	97.4°
C4'	C3'	O3'	H10	115.6°	176.2°
C3'	C4'	C5'	H12	173.6°	55.7°
C3'	C4'	C5'	H13	66.0°	64.2°
O3'	C3'	C4'	C5'	85.3°	119.9°
O3'	C3'	C2'	H7	89.3°	144.0°
O3'	C3'	C4'	H11	36.0°	1.3°
C4'	C5'	O5'	H12	119.8°	120.0°
C4'	C5'	O5'	H13	119.8°	120.1°
C4'	C5'	O5'	P	125.2°	180.0°
C5'	C4'	C3'	H9	37.5°	2.7°
C4'	C5'	H12	H13	120.6°	120.0°
C5'	O5'	P	O1P	59.0°	175.0°
C5'	O5'	P	O2P	174.8°	55.0°
C5'	O5'	P	O3P	59.6°	65.0°
O5'	C5'	C4'	H11	175.0°	54.6°
O5'	C5'	H12	H13	120.6°	120.0°
O5'	P	O1P	O2P	115.1°	120.0°
O5'	P	O1P	O3P	116.4°	120.0°
O5'	P	O1P	C8	172.6°	175.7°
O5'	P	O2P	O3P	122.4°	120.0°
P	O5'	C5'	H12	115.0°	60.0°
P	O5'	C5'	H13	5.4°	60.0°
O5'	P	O3P	H14	122.4°	65.0°
O12	P9	C8	O1P	34.4°	65.8°
O12	P9	C8	O11	127.9°	120.0°
O12	P9	C8	O10	114.2°	120.0°
O12	P9	O11	O10	121.2°	120.0°
O12	P9	C8	C13	86.3°	54.2°
O12	P9	O11	H1	0.0°	64.9°
O12	P9	C8	H15	154.8°	174.2°
O12	P9	O10	H16	0.0°	60.0°
C14	C15	C16	H18	180.0°	180.0°
C15	C14	C13	H17	180.0°	179.9°
C14	C15	C16	C17	0.9°	0.0°
C15	C14	C13	C8	177.5°	180.0°
C15	C14	C13	C18	0.4°	0.2°
C14	C15	C16	H19	179.1°	180.0°
C16	C15	C14	C13	0.4°	0.1°
C15	C16	C17	H19	180.0°	180.0°
C15	C16	C17	C18	0.6°	0.2°
C15	C16	C17	N19	174.8°	180.0°
C16	C15	C14	H17	179.6°	180.0°
C14	C13	C8	O1P	40.3°	29.8°
C14	C13	C8	P9	78.7°	90.3°
C14	C13	C8	C18	177.9°	179.8°
C14	C13	C18	C17	0.7°	0.4°
C14	C13	C8	H15	165.0°	149.8°
C13	C14	C15	H18	179.6°	180.0°
C14	C13	C18	H20	179.3°	179.8°
O1P	P	O2P	O3P	127.3°	120.0°
P	O1P	C8	P9	160.1°	145.2°
P	O1P	C8	C13	80.9°	94.8°
O1P	P	O3P	H14	126.0°	55.0°
P	O1P	C8	H15	43.0°	25.2°
C8	O1P	P	O2P	57.5°	55.6°
C8	O1P	P	O3P	71.0°	64.4°
O1P	C8	P9	C13	120.8°	120.0°
O1P	C8	P9	H15	120.4°	120.0°
O1P	C8	P9	O11	162.3°	54.2°
O1P	C8	P9	O10	79.8°	174.2°
O1P	C8	C13	H15	124.7°	120.0°
O1P	C8	C13	C18	141.8°	150.0°
O2P	P	O3P	H14	0.0°	175.0°
C16	C17	C18	C13	0.1°	0.4°
C16	C17	C18	N19	174.8°	179.8°
C16	C17	N19	C32	162.1°	33.0°
C17	C16	C15	H18	179.1°	180.0°
C16	C17	C18	H20	179.8°	179.7°
C16	C17	N19	H21	17.9°	147.0°
C8	P9	O11	O10	118.0°	120.0°
P9	C8	C13	H15	116.3°	120.0°
P9	C8	C13	C18	99.1°	89.9°
C8	P9	O11	H1	120.9°	55.1°
C8	P9	O10	H16	114.1°	60.0°
O11	P9	C8	C13	41.5°	174.2°
O11	P9	C8	H15	77.3°	65.8°
O11	P9	O10	H16	128.0°	180.0°
O10	P9	C8	C13	159.5°	65.8°
O10	P9	O11	H1	121.1°	175.1°
O10	P9	C8	H15	40.6°	54.2°
C8	C13	C18	C17	177.2°	179.8°
C8	C13	C14	H17	2.5°	0.1°
C8	C13	C18	H20	2.8°	0.1°
C13	C18	C17	H20	180.0°	179.8°
C13	C18	C17	N19	175.0°	179.7°
C18	C13	C8	H15	17.1°	30.0°
C18	C13	C14	H17	179.6°	179.8°
C18	C17	N19	C32	12.8°	146.8°
C18	C17	C16	H19	179.4°	179.8°
C18	C17	N19	H21	167.2°	33.1°
C17	N19	C32	H21	180.0°	179.9°
C17	N19	C32	O33	6.2°	5.2°
C17	N19	C32	C34	174.2°	174.8°
N19	C17	C16	H19	5.2°	0.1°
N19	C17	C18	H20	5.0°	0.1°
N19	C32	O33	C34	179.6°	180.0°
N19	C32	C34	H22	179.6°	0.0°
N19	C32	C34	H23	59.6°	120.0°
N19	C32	C34	H24	60.4°	120.1°
O33	C32	N19	H21	173.8°	174.8°
O33	C32	C34	H22	0.0°	180.0°
O33	C32	C34	H23	120.0°	59.9°
O33	C32	C34	H24	120.0°	60.0°
C34	C32	N19	H21	5.8°	5.3°
C32	C34	H22	H23	120.0°	120.0°
C32	C34	H22	H24	120.0°	120.0°
C32	C34	H23	H24	120.0°	120.0°
H4	C5	C6	H5	0.7°	0.1°
H6	C1'	C2'	H7	104.5°	160.1°
H7	C2'	O2'	H8	58.1°	56.3°
H7	C2'	C3'	H9	32.9°	21.3°
H9	C3'	O3'	H10	6.4°	61.2°
H9	C3'	C4'	H11	158.8°	123.9°
H11	C4'	C5'	H12	65.2°	65.4°
H11	C4'	C5'	H13	55.3°	174.7°
H17	C14	C15	H18	0.4°	0.1°
H18	C15	C16	H19	0.9°	0.0°
H22	C34	H23	H24	120.0°	120.0°

Release date:	2016-09-07
Definition date:	2015-07-30
Last modified:	2016-09-02
Release status:	REL
Processing site:	RCSB
Derived from:	5CXY