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SummaryGeometryRelated PDB entries

558

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NAINAHsing1.29Å1.47ÅAromatic
NAICAJdoub1.31Å1.39ÅAromatic
CBCCAJsing1.51Å1.55Å
NAHCAGdoub1.30Å1.37ÅAromatic
CAJNAAsing1.35Å1.37ÅAromatic
CAGNAAsing1.37Å1.36ÅAromatic
CAGCAFsing1.50Å1.43Å
NAACABsing1.40Å1.36Å
CBBCAFsing1.53Å1.59Å
CAKCABdoub1.38Å1.42ÅAromatic
CAKCALsing1.38Å1.45ÅAromatic
CAFCAEsing1.54Å1.51Å
CABCACsing1.40Å1.39ÅAromatic
CALCAMdoub1.39Å1.40ÅAromatic
CAENADsing1.45Å1.47Å
CACNADsing1.39Å1.38Å
CACCANdoub1.38Å1.42ÅAromatic
CAMCANsing1.39Å1.43ÅAromatic
CAMCAOsing1.48Å1.47Å
NADCAPsing1.40Å1.39Å
CAQCAOdoub1.39Å1.40ÅAromatic
CAQNARsing1.32Å1.50ÅAromatic
CAOCAUsing1.40Å1.41ÅAromatic
CAPCAVdoub1.39Å1.37ÅAromatic
CAPCAZsing1.39Å1.42ÅAromatic
NARCASdoub1.32Å1.34ÅAromatic
CAUCATdoub1.38Å1.42ÅAromatic
CAVCAWsing1.38Å1.36ÅAromatic
CAZCAYdoub1.38Å1.37ÅAromatic
CASCATsing1.39Å1.36ÅAromatic
CASNBAsing1.39Å1.37Å
CAWCAXdoub1.38Å1.36ÅAromatic
CAYCAXsing1.38Å1.34ÅAromatic
CAXCLBsing1.74Å1.77Å
CAUH1sing1.08Å1.08Å
CATH2sing1.08Å1.08Å
NBAH3sing0.97Å1.00Å
NBAH4sing0.97Å1.00Å
CAQH5sing1.08Å1.08Å
CANH6sing1.08Å1.08Å
CALH7sing1.08Å1.08Å
CAKH8sing1.08Å1.08Å
CBCH9sing1.09Å1.10Å
CBCH10sing1.09Å1.10Å
CBCH11sing1.09Å1.10Å
CAFH12sing1.09Å1.10Å
CBBH13sing1.09Å1.10Å
CBBH14sing1.09Å1.10Å
CBBH15sing1.09Å1.10Å
CAEH16sing1.09Å1.10Å
CAEH17sing1.09Å1.10Å
CAVH18sing1.08Å1.08Å
CAWH19sing1.08Å1.08Å
CAYH20sing1.08Å1.08Å
CAZH21sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NAHNAICAJ106.8°110.0°
NAINAHCAG103.6°109.8°
NAICAJCBC124.8°126.6°
NAICAJNAA109.4°106.8°
CBCCAJNAA125.8°126.6°
CAJCBCH9109.5°109.4°
CAJCBCH10109.5°109.5°
CAJCBCH11109.5°109.5°
NAHCAGNAA113.0°107.0°
NAHCAGCAF123.6°129.0°
CAJNAACAG107.2°106.5°
CAJNAACAB133.4°130.7°
NAACAGCAF123.3°124.0°
CAGNAACAB119.4°122.8°
CAGCAFCBB111.9°109.4°
CAGCAFCAE110.5°109.6°
CAGCAFH12110.6°109.5°
NAACABCAK118.8°122.2°
NAACABCAC120.5°117.2°
CBBCAFCAE105.8°109.4°
CBBCAFH12108.4°109.4°
CAFCBBH13109.5°109.4°
CAFCBBH14109.5°109.5°
CAFCBBH15109.5°109.5°
CABCAKCAL119.8°119.8°
CAKCABCAC120.8°120.5°
CABCAKH8120.1°120.1°
CAKCALCAM119.3°120.1°
CAKCALH7120.4°119.9°
CALCAKH8120.0°120.1°
CAFCAENAD111.3°108.7°
CAECAFH12109.5°109.4°
CAFCAEH16109.0°109.6°
CAFCAEH17109.0°109.5°
CABCACNAD123.5°118.6°
CABCACCAN119.3°119.8°
CALCAMCAN119.4°120.1°
CALCAMCAO121.9°119.9°
CAMCALH7120.4°119.9°
CAENADCAC120.8°123.2°
CAENADCAP120.3°117.8°
NADCAEH16109.0°109.2°
NADCAEH17109.0°110.2°
NADCACCAN117.2°121.7°
CACNADCAP117.9°118.9°
CACCANCAM121.2°119.7°
CACCANH6119.4°120.1°
CANCAMCAO118.7°120.0°
CAMCANH6119.5°120.2°
CAMCAOCAQ119.8°120.4°
CAMCAOCAU121.0°120.5°
NADCAPCAV123.1°120.0°
NADCAPCAZ120.7°120.1°
CAOCAQNAR117.7°120.7°
CAQCAOCAU119.2°119.0°
CAOCAQH5121.1°119.6°
CAQNARCAS119.1°121.8°
NARCAQH5121.1°119.7°
CAOCAUCAT121.5°118.4°
CAOCAUH1119.3°120.8°
CAVCAPCAZ116.2°119.9°
CAPCAVCAW121.2°119.9°
CAPCAVH18119.4°120.0°
CAPCAZCAY122.0°119.9°
CAPCAZH21119.0°120.1°
NARCASCAT123.9°120.8°
NARCASNBA119.0°119.6°
CAUCATCAS118.5°119.2°
CATCAUH1119.3°120.8°
CAUCATH2120.7°120.4°
CAVCAWCAX120.1°120.0°
CAWCAVH18119.4°120.0°
CAVCAWH19120.0°120.0°
CAZCAYCAX118.2°120.0°
CAZCAYH20120.9°120.0°
CAYCAZH21119.0°120.0°
CATCASNBA116.8°119.6°
CASCATH2120.8°120.4°
CASNBAH3109.5°120.0°
CASNBAH4109.4°120.1°
CAWCAXCAY121.9°120.1°
CAWCAXCLB121.9°119.9°
CAXCAWH19120.0°120.0°
CAYCAXCLB115.8°119.9°
CAXCAYH20120.9°120.0°
H3NBAH4109.4°119.9°
H9CBCH10109.5°109.4°
H9CBCH11109.4°109.5°
H10CBCH11109.4°109.5°
H13CBBH14109.5°109.5°
H13CBBH15109.5°109.5°
H14CBBH15109.5°109.5°
H16CAEH17109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NAHNAICAJCBC178.9°179.8°
NAHNAICAJNAA1.4°0.1°
NAINAHCAGNAA1.3°0.3°
NAINAHCAGCAF178.7°179.4°
NAICAJCBCNAA177.1°179.9°
CAJNAINAHCAG1.6°0.1°
NAICAJNAACAG0.6°0.3°
NAICAJNAACAB179.3°179.5°
NAICAJCBCH90.0°90.0°
NAICAJCBCH10120.0°29.9°
NAICAJCBCH11120.0°150.0°
CBCCAJNAACAG178.1°179.7°
CBCCAJNAACAB3.2°0.6°
CAJCBCH9H10120.0°119.9°
CAJCBCH9H11120.0°120.0°
CAJCBCH10H11120.0°120.0°
NAHCAGNAACAJ0.5°0.4°
NAHCAGNAACAF177.4°179.7°
NAHCAGNAACAB178.4°179.4°
NAHCAGCAFCBB13.7°129.7°
NAHCAGCAFCAE103.9°110.3°
NAHCAGCAFH12134.7°9.8°
CAJNAACAGCAB178.9°179.8°
CAJNAACAGCAF178.0°179.3°
CAJNAACABCAK49.7°47.6°
CAJNAACABCAC131.6°135.2°
NAACAJCBCH9177.1°90.1°
NAACAJCBCH1062.8°150.0°
NAACAJCBCH1157.1°30.0°
NAACAGCAFCBB169.1°49.9°
CAGNAACABCAK131.7°132.7°
NAACAGCAFCAE73.3°70.1°
CAGNAACABCAC47.0°44.6°
NAACAGCAFH1248.1°169.9°
CAFCAGNAACAB1.0°0.9°
CAGCAFCBBCAE120.3°120.1°
CAGCAFCBBH12122.3°120.0°
CAGCAFCAEH12122.1°120.1°
CAGCAFCAENAD55.0°42.5°
CAGCAFCBBH13180.0°60.0°
CAGCAFCBBH1460.0°180.0°
CAGCAFCBBH1560.0°60.0°
CAGCAFCAEH1665.3°161.8°
CAGCAFCAEH17175.2°77.9°
NAACABCAKCAC178.7°177.2°
NAACABCAKCAL179.5°176.8°
NAACABCACNAD1.6°4.1°
NAACABCACCAN176.1°176.1°
NAACABCAKH80.5°4.1°
CBBCAFCAEH12116.6°119.9°
CBBCAFCAENAD176.2°77.5°
CAFCBBH13H14120.0°120.0°
CAFCBBH13H15120.0°120.0°
CAFCBBH14H15120.0°120.0°
CBBCAFCAEH1655.9°41.8°
CBBCAFCAEH1763.5°162.1°
CABCAKCALH8180.0°179.2°
CABCAKCALCAM5.1°0.5°
CAKCABCACNAD179.7°178.6°
CAKCABCACCAN2.5°1.2°
CABCAKCALH7174.9°179.6°
CALCAKCABCAC1.8°0.4°
CAKCALCAMH7180.0°180.0°
CAKCALCAMCAN3.9°0.6°
CAKCALCAMCAO178.3°179.1°
CAFCAENADH16120.3°119.5°
CAFCAENADH17120.3°120.1°
CAFCAENADCAC23.6°42.7°
CAFCAENADCAP167.9°137.4°
CAECAFCBBH1359.7°179.8°
CAECAFCBBH1460.3°59.9°
CAECAFCBBH15179.7°60.1°
CAFCAEH16H17119.1°120.2°
CABCACNADCAE61.7°77.5°
CABCACNADCAN177.8°179.8°
CABCACCANCAM3.7°1.1°
CABCACNADCAP129.6°102.6°
CABCACCANH6176.3°179.0°
CACCABCAKH8178.2°178.8°
CALCAMCANCAC0.5°0.2°
CALCAMCANCAO177.9°179.7°
CALCAMCAOCAQ20.0°179.7°
CALCAMCAOCAU160.5°0.7°
CALCAMCANH6179.5°179.9°
CAMCALCAKH8174.9°179.7°
CAENADCACCAP168.7°179.8°
CAENADCACCAN116.1°102.7°
CAENADCAPCAV171.8°174.2°
CAENADCAPCAZ9.8°6.1°
NADCAECAFH1267.1°162.7°
NADCAEH16H17119.2°120.8°
NADCACCANCAM178.4°178.7°
CACNADCAPCAV19.4°5.9°
CACNADCAPCAZ158.9°173.7°
NADCACCANH61.6°1.2°
CACNADCAEH16143.9°76.7°
CACNADCAEH1796.6°162.8°
CACCANCAMH6180.0°180.0°
CACCANCAMCAO177.4°179.9°
CANCACNADCAP52.7°77.2°
CANCAMCAOCAQ157.8°0.0°
CANCAMCAOCAU21.7°179.6°
CANCAMCALH7176.1°179.4°
CAMCAOCAQCAU179.5°179.6°
CAMCAOCAQNAR178.2°180.0°
CAMCAOCAUCAT178.2°180.0°
CAMCAOCAUH11.8°0.2°
CAMCAOCAQH51.8°0.4°
CAOCAMCANH62.6°0.1°
CAOCAMCALH71.7°0.8°
NADCAPCAVCAZ178.4°179.7°
NADCAPCAVCAW178.9°180.0°
NADCAPCAZCAY178.9°179.8°
CAPNADCAEH1647.7°103.1°
CAPNADCAEH1771.8°17.4°
NADCAPCAVH181.2°0.1°
NADCAPCAZH211.1°0.0°
CAOCAQNARH5180.0°179.5°
CAOCAQNARCAS2.5°0.2°
CAQCAOCAUCAT1.3°0.4°
CAQCAOCAUH1178.6°179.8°
NARCAQCAOCAU1.4°0.4°
CAQNARCASCAT3.7°0.1°
CAQNARCASNBA178.1°180.0°
CAOCAUCATH1180.0°179.8°
CAOCAUCATCAS2.3°0.3°
CAOCAUCATH2177.7°179.8°
CAUCAOCAQH5178.7°180.0°
CAPCAVCAWH18180.0°179.9°
CAVCAPCAZCAY2.6°0.5°
CAPCAVCAWCAX1.5°0.0°
CAPCAVCAWH19178.5°179.9°
CAVCAPCAZH21177.4°179.7°
CAZCAPCAVCAW2.7°0.3°
CAPCAZCAYH21180.0°179.8°
CAPCAZCAYCAX1.8°0.5°
CAZCAPCAVH18177.2°179.8°
CAPCAZCAYH20178.2°179.7°
NARCASCATCAU3.6°0.1°
NARCASCATNBA174.6°179.9°
NARCASCATH2176.4°180.0°
NARCASNBAH30.0°180.0°
NARCASNBAH4120.0°0.0°
CASNARCAQH5177.5°179.8°
CAUCATCASH2180.0°179.9°
CAUCATCASNBA178.1°180.0°
CAVCAWCAXH19180.0°180.0°
CAVCAWCAXCAY6.3°0.0°
CAVCAWCAXCLB178.7°180.0°
CAZCAYCAXCAW6.3°0.2°
CAZCAYCAXH20180.0°179.9°
CAZCAYCAXCLB179.1°179.8°
CASCATCAUH1177.7°180.0°
CATCASNBAH3174.8°0.1°
CATCASNBAH454.8°179.9°
NBACASCATH21.9°0.1°
CASNBAH3H4120.0°180.0°
CAWCAXCAYCLB172.9°180.0°
CAXCAWCAVH18178.5°179.9°
CAWCAXCAYH20173.7°179.9°
CAYCAXCAWH19173.7°180.0°
CAXCAYCAZH21178.2°179.7°
CLBCAXCAWH191.3°0.1°
CLBCAXCAYH200.8°0.1°
H1CAUCATH22.3°0.1°
H7CALCAKH85.1°0.4°
H9CBCH10H11120.0°120.0°
H12CAFCBBH1357.7°60.0°
H12CAFCBBH14177.7°60.0°
H12CAFCBBH1562.3°180.0°
H12CAFCAEH16172.6°78.1°
H12CAFCAEH1753.1°42.2°
H13CBBH14H15120.0°120.0°
H18CAVCAWH191.4°0.0°
H20CAYCAZH211.8°0.2°

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PDB entries from 2024-07-17

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