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SummaryGeometryRelated PDB entries

51P

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C'6C'1doub1.40Å1.40ÅAromatic
C'1C'2sing1.40Å1.40ÅAromatic
C'1C11sing1.47Å1.39Å
C'3C'2doub1.38Å1.39ÅAromatic
C'2O13sing1.36Å1.38Å
C'4C'3sing1.38Å1.39ÅAromatic
C'3H'3sing1.08Å1.08Å
C'5C'4doub1.38Å1.39ÅAromatic
C'4H'4sing1.08Å1.08Å
C'5C'6sing1.38Å1.38ÅAromatic
C'5H'5sing1.08Å1.08Å
C'6H'6sing1.08Å1.08Å
C8'N1'doub1.33Å1.33ÅAromatic
N1'C2'sing1.32Å1.30ÅAromatic
C10C11sing1.51Å1.57Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C10H10Bsing1.09Å1.10Å
C11C9'doub1.34Å1.51Å
C13O13sing1.43Å1.55Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C13H13Bsing1.09Å1.10Å
N3'C2'doub1.33Å1.37ÅAromatic
C2'N2'sing1.38Å1.31Å
N2'HN2'sing0.97Å1.00Å
N2'HN2Asing0.97Å1.00Å
C4'N3'sing1.33Å1.34ÅAromatic
N4'C4'sing1.38Å1.37Å
C5'C4'doub1.40Å1.40ÅAromatic
N4'HN4'sing0.97Å1.00Å
N4'HN4Asing0.97Å1.00Å
C6'C5'sing1.47Å1.40ÅAromatic
C5'C8'sing1.40Å1.42ÅAromatic
C9'C6'sing1.47Å1.52Å
C6'C7'doub1.36Å1.34ÅAromatic
C7'O8'sing1.35Å1.38ÅAromatic
C7'H7'sing1.08Å1.08Å
O8'C8'sing1.34Å1.34ÅAromatic
C9'H9'sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C'6C'1C'2120.6°119.6°
C'6C'1C11121.4°120.2°
C'1C'6C'5119.1°119.9°
C'1C'6H'6120.5°120.0°
C'2C'1C11118.0°120.2°
C'1C'2C'3120.3°119.7°
C'1C'2O13118.2°120.1°
C'1C11C10119.4°120.0°
C'1C11C9'127.2°120.0°
C'3C'2O13121.5°120.2°
C'2C'3C'4118.6°120.1°
C'2C'3H'3120.7°119.9°
C'2O13C13110.4°117.0°
C'4C'3H'3120.7°120.0°
C'3C'4C'5121.3°120.4°
C'3C'4H'4119.3°119.8°
C'5C'4H'4119.4°119.8°
C'4C'5C'6120.2°120.2°
C'4C'5H'5119.9°119.9°
C'6C'5H'5119.9°119.9°
C'5C'6H'6120.5°120.1°
C8'N1'C2'120.5°120.7°
N1'C8'C5'122.7°118.5°
N1'C8'O8'128.0°134.0°
N1'C2'N3'119.0°122.5°
N1'C2'N2'117.1°118.8°
C11C10H10109.5°109.5°
C11C10H10A109.5°109.4°
C11C10H10B109.5°109.4°
C10C11C9'113.3°120.0°
H10C10H10A109.5°109.5°
H10C10H10B109.5°109.5°
H10AC10H10B109.5°109.5°
C11C9'C6'122.7°120.0°
C11C9'H9'118.6°120.0°
O13C13H13109.5°109.5°
O13C13H13A109.5°109.5°
O13C13H13B109.5°109.5°
H13C13H13A109.5°109.4°
H13C13H13B109.5°109.4°
H13AC13H13B109.4°109.5°
N3'C2'N2'123.9°118.8°
C2'N3'C4'124.3°120.8°
C2'N2'HN2'109.5°120.0°
C2'N2'HN2A109.5°120.0°
HN2'N2'HN2A109.4°120.0°
N3'C4'N4'116.0°120.8°
N3'C4'C5'117.0°118.4°
N4'C4'C5'127.0°120.8°
C4'N4'HN4'109.5°120.0°
C4'N4'HN4A109.4°120.0°
C4'C5'C6'138.7°135.3°
C4'C5'C8'116.4°119.1°
HN4'N4'HN4A109.5°120.0°
C6'C5'C8'104.9°105.6°
C5'C6'C9'124.7°127.1°
C5'C6'C7'108.9°105.7°
C5'C8'O8'109.3°107.6°
C9'C6'C7'126.3°127.2°
C6'C9'H9'118.6°120.0°
C6'C7'O8'109.0°109.7°
C6'C7'H7'125.5°125.2°
O8'C7'H7'125.5°125.1°
C7'O8'C8'107.9°111.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C'6C'1C'2C11179.2°179.7°
C'6C'1C'2C'30.0°0.3°
C'6C'1C'2O13178.8°179.7°
C'1C'6C'5C'40.5°0.6°
C'1C'6C'5H'6180.0°179.4°
C'1C'6C'5H'5179.5°179.7°
C'6C'1C11C1083.4°108.0°
C'6C'1C11C9'92.6°71.9°
C'1C'2C'3O13178.8°179.9°
C'1C'2C'3C'40.7°0.0°
C'1C'2C'3H'3179.3°180.0°
C'2C'1C'6C'50.1°0.6°
C'2C'1C'6H'6179.9°180.0°
C'2C'1C11C1095.8°72.3°
C'2C'1C11C9'88.2°107.7°
C'1C'2O13C13170.3°180.0°
C11C'1C'2C'3179.2°180.0°
C11C'1C'2O132.0°0.1°
C11C'1C'6C'5179.1°179.7°
C11C'1C'6H'60.9°0.3°
C'1C11C10C9'176.6°179.9°
C'1C11C10H10180.0°90.0°
C'1C11C10H10A60.0°150.0°
C'1C11C10H10B60.0°30.0°
C'1C11C9'C6'8.3°5.2°
C'1C11C9'H9'171.7°174.9°
C'2C'3C'4H'3180.0°180.0°
C'2C'3C'4C'51.3°0.0°
C'2C'3C'4H'4178.7°180.0°
C'3C'2O13C1310.9°0.1°
O13C'2C'3C'4179.5°179.9°
O13C'2C'3H'30.5°0.0°
C'2O13C13H13180.0°60.0°
C'2O13C13H13A60.0°180.0°
C'2O13C13H13B60.0°59.9°
C'3C'4C'5H'4180.0°180.0°
C'3C'4C'5C'61.3°0.2°
C'3C'4C'5H'5178.7°180.0°
H'3C'3C'4C'5178.7°180.0°
H'3C'3C'4H'41.3°0.0°
C'4C'5C'6H'5180.0°179.8°
C'4C'5C'6H'6179.5°180.0°
H'4C'4C'5C'6178.7°179.7°
H'4C'4C'5H'51.3°0.1°
H'5C'5C'6H'60.5°0.3°
C8'N1'C2'N3'1.5°0.0°
C8'N1'C2'N2'178.4°180.0°
N1'C8'C5'C4'0.6°0.0°
N1'C8'C5'C6'179.1°180.0°
N1'C8'C5'O8'177.8°180.0°
N1'C8'O8'C7'179.9°180.0°
N1'C2'N3'N2'179.9°179.9°
N1'C2'N2'HN2'0.0°0.1°
N1'C2'N2'HN2A120.0°180.0°
N1'C2'N3'C4'0.9°0.0°
C2'N1'C8'C5'0.7°0.0°
C2'N1'C8'O8'176.6°180.0°
C11C10H10H10A120.0°120.0°
C11C10H10H10B120.0°120.0°
C11C10H10AH10B120.0°119.9°
C10C11C9'C6'168.0°174.8°
C10C11C9'H9'12.0°5.1°
H10C10H10AH10B120.0°120.1°
H10C10C11C9'3.4°90.0°
H10AC10C11C9'123.4°30.0°
H10BC10C11C9'116.6°150.0°
C11C9'C6'C5'155.9°163.1°
C11C9'C6'H9'180.0°179.9°
C11C9'C6'C7'27.0°16.8°
O13C13H13H13A120.0°120.0°
O13C13H13H13B120.0°120.0°
O13C13H13AH13B120.0°120.1°
H13C13H13AH13B120.0°119.9°
N3'C2'N2'HN2'179.9°180.0°
N3'C2'N2'HN2A60.1°0.0°
C2'N3'C4'N4'179.6°180.0°
C2'N3'C4'C5'0.4°0.0°
C2'N2'HN2'HN2A120.0°180.0°
N2'C2'N3'C4'179.0°180.0°
N3'C4'N4'C5'180.0°180.0°
N3'C4'N4'HN4'0.0°0.0°
N3'C4'N4'HN4A120.0°180.0°
N3'C4'C5'C6'178.5°180.0°
N3'C4'C5'C8'1.2°0.0°
C4'N4'HN4'HN4A120.0°180.0°
N4'C4'C5'C6'1.4°0.0°
N4'C4'C5'C8'178.9°180.0°
C5'C4'N4'HN4'180.0°180.0°
C5'C4'N4'HN4A60.0°0.0°
C4'C5'C6'C8'179.7°180.0°
C4'C5'C6'C9'2.5°0.1°
C4'C5'C6'C7'180.0°180.0°
C4'C5'C8'O8'178.4°180.0°
C5'C6'C9'C7'177.0°179.9°
C5'C6'C7'O8'1.8°0.1°
C5'C6'C7'H7'178.2°180.0°
C6'C5'C8'O8'1.4°0.0°
C5'C6'C9'H9'24.1°17.0°
C8'C5'C6'C9'177.7°179.9°
C8'C5'C6'C7'0.3°0.0°
C5'C8'O8'C7'2.5°0.0°
C9'C6'C7'O8'179.2°179.9°
C9'C6'C7'H7'0.8°0.1°
C6'C7'O8'H7'180.0°180.0°
C6'C7'O8'C8'2.7°0.0°
C7'C6'C9'H9'152.9°163.1°
H7'C7'O8'C8'177.3°180.0°

223532

PDB entries from 2024-08-07

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