50T
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C2 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.37Å | Aromatic |
C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.33Å | Aromatic |
C4 | N3 | sing | 1.33Å | 1.36Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.48Å | Aromatic |
C5 | N7 | sing | 1.36Å | 1.35Å | Aromatic |
C6 | N1 | doub | 1.33Å | 1.36Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.47Å | |
C8 | N9 | sing | 1.36Å | 1.36Å | Aromatic |
C1' | N9 | sing | 1.47Å | 1.48Å | |
C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
O3B | VB | sing | 1.84Å | 2.12Å | |
O2' | C2' | sing | 1.43Å | 1.46Å | |
O2B | VB | sing | 1.84Å | 1.77Å | |
O3' | C3' | sing | 1.43Å | 1.48Å | |
C3' | C4' | sing | 1.54Å | 1.54Å | |
C3' | C2' | sing | 1.55Å | 1.49Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
O5' | PA | sing | 1.61Å | 1.58Å | |
PA | O1A | doub | 1.48Å | 1.50Å | |
PA | O2A | sing | 1.61Å | 1.59Å | |
PA | O3A | sing | 1.61Å | 1.63Å | |
O3A | VB | sing | 1.84Å | 1.82Å | |
O1B | VB | sing | 1.84Å | 1.78Å | |
O4B | VB | sing | 1.84Å | 1.93Å | |
C2' | C1' | sing | 1.55Å | 1.54Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
O2A | HOA | sing | 0.97Å | 0.95Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
N6 | H61N | sing | 0.97Å | 1.00Å | |
N6 | H62N | sing | 0.97Å | 1.00Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
O3B | H3B | sing | 0.97Å | 0.95Å | |
O2' | H2' | sing | 0.97Å | 0.95Å | |
C2' | HA | sing | 1.09Å | 1.10Å | |
O3' | H3' | sing | 0.97Å | 0.95Å | |
C3' | HB | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
O1B | H1B | sing | 0.97Å | 0.95Å | |
O2B | H2B | sing | 0.97Å | 0.95Å | |
O4B | H4B | sing | 0.97Å | 0.95Å | |
C1' | H1' | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N1 | C2 | N3 | 121.6° | 122.5° |
C2 | N1 | C6 | 119.7° | 121.2° |
N1 | C2 | H2 | 119.2° | 118.8° |
C2 | N3 | C4 | 121.5° | 120.6° |
N3 | C2 | H2 | 119.2° | 118.7° |
C5 | C4 | N9 | 106.2° | 106.0° |
C5 | C4 | N3 | 120.1° | 119.1° |
C4 | C5 | C6 | 117.4° | 118.2° |
C4 | C5 | N7 | 108.2° | 107.1° |
N9 | C4 | N3 | 133.7° | 135.0° |
C4 | N9 | C8 | 110.6° | 107.5° |
C4 | N9 | C1' | 124.0° | 126.2° |
C6 | C5 | N7 | 134.4° | 134.7° |
C5 | C6 | N1 | 119.6° | 118.4° |
C5 | C6 | N6 | 120.1° | 120.8° |
C5 | N7 | C8 | 108.6° | 109.5° |
N1 | C6 | N6 | 120.3° | 120.8° |
C6 | N6 | H61N | 109.5° | 120.0° |
C6 | N6 | H62N | 109.5° | 120.0° |
C8 | N9 | C1' | 125.4° | 126.3° |
N9 | C8 | N7 | 106.4° | 109.9° |
N9 | C8 | H8 | 126.8° | 125.0° |
N9 | C1' | C2' | 107.0° | 110.6° |
N9 | C1' | O4' | 110.1° | 110.6° |
N9 | C1' | H1' | 112.4° | 110.5° |
N7 | C8 | H8 | 126.8° | 125.0° |
O3B | VB | O2B | 89.6° | 90.0° |
O3B | VB | O3A | 170.8° | 180.0° |
O3B | VB | O1B | 90.0° | 90.0° |
O3B | VB | O4B | 86.1° | 90.0° |
VB | O3B | H3B | 109.5° | 114.0° |
O2' | C2' | C3' | 112.2° | 110.9° |
O2' | C2' | C1' | 111.4° | 110.9° |
C2' | O2' | H2' | 109.5° | 114.0° |
O2' | C2' | HA | 111.5° | 110.8° |
O2B | VB | O3A | 91.9° | 90.0° |
O2B | VB | O1B | 116.7° | 120.0° |
O2B | VB | O4B | 128.3° | 120.0° |
VB | O2B | H2B | 109.5° | 114.0° |
O3' | C3' | C4' | 105.5° | 110.5° |
O3' | C3' | C2' | 113.1° | 110.5° |
C3' | O3' | H3' | 109.5° | 114.0° |
O3' | C3' | HB | 112.4° | 110.4° |
C4' | C3' | C2' | 101.4° | 104.2° |
C3' | C4' | C5' | 108.6° | 109.9° |
C3' | C4' | O4' | 107.0° | 107.3° |
C4' | C3' | HB | 111.5° | 110.5° |
C3' | C4' | H4' | 110.7° | 109.9° |
C3' | C2' | C1' | 99.6° | 102.1° |
C3' | C2' | HA | 111.1° | 110.9° |
C2' | C3' | HB | 112.2° | 110.6° |
C5' | C4' | O4' | 107.1° | 109.9° |
C4' | C5' | O5' | 109.4° | 109.5° |
C5' | C4' | H4' | 111.1° | 109.9° |
C4' | C5' | H5'1 | 109.5° | 109.4° |
C4' | C5' | H5'2 | 109.5° | 109.5° |
C4' | O4' | C1' | 105.9° | 107.0° |
O4' | C4' | H4' | 112.3° | 110.0° |
C5' | O5' | PA | 130.2° | 123.0° |
O5' | C5' | H5'1 | 109.5° | 109.5° |
O5' | C5' | H5'2 | 109.5° | 109.5° |
O5' | PA | O1A | 106.5° | 109.5° |
O5' | PA | O2A | 105.3° | 109.5° |
O5' | PA | O3A | 104.5° | 109.4° |
O1A | PA | O2A | 113.5° | 109.5° |
O1A | PA | O3A | 119.1° | 109.5° |
O2A | PA | O3A | 106.9° | 109.5° |
PA | O2A | HOA | 109.5° | 114.0° |
PA | O3A | VB | 142.7° | 114.0° |
O3A | VB | O1B | 97.4° | 90.0° |
O3A | VB | O4B | 85.9° | 90.0° |
O1B | VB | O4B | 114.8° | 120.0° |
VB | O1B | H1B | 109.5° | 114.0° |
VB | O4B | H4B | 109.5° | 114.0° |
C2' | C1' | O4' | 101.8° | 103.5° |
C1' | C2' | HA | 110.5° | 110.9° |
C2' | C1' | H1' | 111.6° | 110.6° |
O4' | C1' | H1' | 113.4° | 110.7° |
H61N | N6 | H62N | 109.4° | 119.9° |
H5'1 | C5' | H5'2 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N1 | C2 | N3 | H2 | 180.0° | 179.7° |
N1 | C2 | N3 | C4 | 1.3° | 0.0° |
C2 | N1 | C6 | C5 | 2.7° | 0.1° |
C2 | N1 | C6 | N6 | 178.9° | 180.0° |
C2 | N3 | C4 | C5 | 1.1° | 0.0° |
C2 | N3 | C4 | N9 | 179.1° | 180.0° |
N3 | C2 | N1 | C6 | 2.1° | 0.0° |
C5 | C4 | N9 | N3 | 178.3° | 180.0° |
C4 | C5 | C6 | N7 | 178.0° | 180.0° |
C4 | C5 | C6 | N1 | 2.4° | 0.0° |
C4 | C5 | C6 | N6 | 179.2° | 180.0° |
C5 | C4 | N9 | C8 | 1.0° | 0.0° |
C5 | C4 | N9 | C1' | 177.8° | 180.0° |
C4 | C5 | N7 | C8 | 1.3° | 0.0° |
N9 | C4 | C5 | C6 | 179.9° | 180.0° |
N9 | C4 | C5 | N7 | 1.4° | 0.0° |
C4 | N9 | C8 | C1' | 176.8° | 180.0° |
C4 | N9 | C8 | N7 | 0.2° | 0.0° |
C4 | N9 | C1' | C2' | 121.5° | 85.0° |
C4 | N9 | C1' | O4' | 128.7° | 160.9° |
C4 | N9 | C8 | H8 | 179.8° | 179.9° |
C4 | N9 | C1' | H1' | 1.3° | 37.9° |
N3 | C4 | C5 | C6 | 1.6° | 0.0° |
N3 | C4 | C5 | N7 | 180.0° | 180.0° |
N3 | C4 | N9 | C8 | 179.2° | 180.0° |
N3 | C4 | N9 | C1' | 3.9° | 0.0° |
C4 | N3 | C2 | H2 | 178.7° | 179.7° |
C5 | C6 | N1 | N6 | 178.4° | 180.0° |
C6 | C5 | N7 | C8 | 179.4° | 180.0° |
C5 | C6 | N6 | H61N | 178.4° | 0.0° |
C5 | C6 | N6 | H62N | 58.4° | 180.0° |
N7 | C5 | C6 | N1 | 179.6° | 180.0° |
N7 | C5 | C6 | N6 | 1.2° | 0.0° |
C5 | N7 | C8 | N9 | 0.7° | 0.0° |
C5 | N7 | C8 | H8 | 179.3° | 180.0° |
C6 | N1 | C2 | H2 | 177.9° | 179.7° |
N1 | C6 | N6 | H61N | 0.0° | 180.0° |
N1 | C6 | N6 | H62N | 120.0° | 0.0° |
C6 | N6 | H61N | H62N | 120.0° | 179.9° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
C8 | N9 | C1' | C2' | 54.9° | 95.0° |
C8 | N9 | C1' | O4' | 54.9° | 19.1° |
C8 | N9 | C1' | H1' | 177.7° | 142.1° |
C1' | N9 | C8 | N7 | 177.0° | 180.0° |
N9 | C1' | C2' | O2' | 76.4° | 86.3° |
N9 | C1' | C2' | C3' | 165.1° | 155.5° |
N9 | C1' | O4' | C4' | 153.2° | 158.5° |
N9 | C1' | C2' | O4' | 115.5° | 118.5° |
N9 | C1' | C2' | H1' | 123.3° | 122.8° |
N9 | C1' | O4' | H1' | 126.9° | 122.9° |
C1' | N9 | C8 | H8 | 3.0° | 0.1° |
N9 | C1' | C2' | HA | 48.1° | 37.3° |
O3B | VB | O2B | O3A | 170.9° | 180.0° |
O3B | VB | O2B | O1B | 89.8° | 90.0° |
O3B | VB | O2B | O4B | 84.7° | 90.0° |
O3B | VB | O3A | PA | 3.7° | 112.8° |
O3B | VB | O3A | O1B | 143.7° | 172.8° |
O3B | VB | O3A | O4B | 29.3° | 52.8° |
O3B | VB | O1B | O4B | 85.7° | 90.0° |
O3B | VB | O1B | H1B | 180.0° | 90.0° |
O3B | VB | O2B | H2B | 180.0° | 0.0° |
O3B | VB | O4B | H4B | 180.0° | 89.9° |
O2' | C2' | C3' | O3' | 43.9° | 20.4° |
O2' | C2' | C3' | C4' | 156.3° | 139.1° |
O2' | C2' | C3' | C1' | 117.9° | 118.2° |
O2' | C2' | C3' | HA | 125.6° | 123.6° |
O2' | C2' | C1' | HA | 124.5° | 123.6° |
O2' | C2' | C1' | O4' | 168.1° | 155.2° |
O2' | C2' | C3' | HB | 84.6° | 102.2° |
O2' | C2' | C1' | H1' | 46.9° | 36.6° |
O2B | VB | O3A | PA | 95.3° | 180.0° |
O2B | VB | O3A | O1B | 117.3° | 120.0° |
O2B | VB | O3A | O4B | 128.3° | 120.0° |
O2B | VB | O1B | O4B | 175.2° | 179.9° |
O2B | VB | O3B | H3B | 180.0° | 180.0° |
O2B | VB | O1B | H1B | 90.5° | 0.0° |
O2B | VB | O4B | H4B | 93.6° | 0.1° |
O3' | C3' | C4' | C2' | 118.1° | 118.7° |
O3' | C3' | C4' | HB | 122.3° | 122.5° |
O3' | C3' | C2' | HB | 128.5° | 122.5° |
O3' | C3' | C4' | C5' | 142.8° | 119.9° |
O3' | C3' | C4' | O4' | 101.9° | 120.7° |
O3' | C3' | C2' | C1' | 74.0° | 97.8° |
O3' | C3' | C2' | HA | 169.5° | 143.9° |
O3' | C3' | C4' | H4' | 20.7° | 1.2° |
C4' | C3' | C2' | HB | 119.1° | 118.8° |
C3' | C4' | C5' | O4' | 115.2° | 117.8° |
C3' | C4' | C5' | H4' | 121.9° | 121.1° |
C3' | C4' | O4' | H4' | 121.6° | 119.5° |
C3' | C4' | C5' | O5' | 68.4° | 175.0° |
C4' | C3' | C2' | C1' | 38.4° | 20.9° |
C3' | C4' | O4' | C1' | 15.4° | 26.5° |
C4' | C3' | C2' | HA | 78.1° | 97.4° |
C4' | C3' | O3' | H3' | 180.0° | 179.9° |
C3' | C4' | C5' | H5'1 | 51.6° | 55.0° |
C3' | C4' | C5' | H5'2 | 171.6° | 65.0° |
C2' | C3' | C4' | C5' | 99.1° | 121.4° |
C2' | C3' | C4' | O4' | 16.2° | 2.0° |
C3' | C2' | C1' | HA | 117.0° | 118.2° |
C3' | C2' | C1' | O4' | 49.6° | 37.0° |
C3' | C2' | O2' | H2' | 180.0° | 61.5° |
C2' | C3' | O3' | H3' | 70.1° | 65.2° |
C2' | C3' | C4' | H4' | 138.8° | 117.5° |
C3' | C2' | C1' | H1' | 71.7° | 81.6° |
C5' | C4' | O4' | H4' | 122.1° | 121.1° |
C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
C4' | C5' | O5' | H5'2 | 120.0° | 120.0° |
C4' | C5' | O5' | PA | 156.7° | 180.0° |
C5' | C4' | O4' | C1' | 131.6° | 145.9° |
C5' | C4' | C3' | HB | 20.5° | 2.6° |
C4' | C5' | H5'1 | H5'2 | 120.0° | 120.0° |
O4' | C4' | C5' | O5' | 176.4° | 67.2° |
C4' | O4' | C1' | C2' | 40.0° | 40.0° |
O4' | C4' | C3' | HB | 135.8° | 116.8° |
O4' | C4' | C5' | H5'1 | 63.5° | 172.9° |
O4' | C4' | C5' | H5'2 | 56.4° | 52.9° |
C4' | O4' | C1' | H1' | 80.0° | 78.5° |
C5' | O5' | PA | O1A | 50.0° | 55.0° |
C5' | O5' | PA | O2A | 70.7° | 65.0° |
C5' | O5' | PA | O3A | 176.8° | 175.0° |
O5' | C5' | C4' | H4' | 53.5° | 54.0° |
O5' | C5' | H5'1 | H5'2 | 120.0° | 120.1° |
O5' | PA | O1A | O2A | 115.3° | 120.0° |
O5' | PA | O1A | O3A | 117.5° | 120.0° |
O5' | PA | O2A | O3A | 110.7° | 120.0° |
O5' | PA | O3A | VB | 108.8° | 180.0° |
O5' | PA | O2A | HOA | 116.0° | 60.0° |
PA | O5' | C5' | H5'1 | 36.7° | 60.0° |
PA | O5' | C5' | H5'2 | 83.3° | 60.0° |
O1A | PA | O2A | O3A | 133.3° | 120.0° |
O1A | PA | O3A | VB | 132.7° | 60.0° |
O1A | PA | O2A | HOA | 0.0° | 180.0° |
O2A | PA | O3A | VB | 2.5° | 60.0° |
PA | O3A | VB | O1B | 147.5° | 60.0° |
PA | O3A | VB | O4B | 33.0° | 60.0° |
O3A | PA | O2A | HOA | 133.3° | 60.0° |
O3A | VB | O1B | O4B | 88.9° | 90.0° |
O3A | VB | O3B | H3B | 80.8° | 112.7° |
O3A | VB | O1B | H1B | 5.4° | 90.0° |
O3A | VB | O2B | H2B | 9.0° | 180.0° |
O3A | VB | O4B | H4B | 4.5° | 90.1° |
O1B | VB | O3B | H3B | 63.3° | 60.0° |
O1B | VB | O2B | H2B | 90.2° | 90.0° |
O1B | VB | O4B | H4B | 91.8° | 179.9° |
O4B | VB | O3B | H3B | 51.5° | 60.0° |
O4B | VB | O1B | H1B | 94.3° | 180.0° |
O4B | VB | O2B | H2B | 95.3° | 90.1° |
C2' | C1' | O4' | H1' | 120.0° | 118.6° |
C1' | C2' | O2' | H2' | 69.3° | 174.2° |
C1' | C2' | C3' | HB | 157.5° | 139.6° |
O4' | C1' | C2' | HA | 67.4° | 81.2° |
C1' | O4' | C4' | H4' | 106.3° | 93.0° |
H2' | O2' | C2' | HA | 54.6° | 62.1° |
HA | C2' | C3' | HB | 41.0° | 21.4° |
HA | C2' | C1' | H1' | 171.4° | 160.2° |
H3' | O3' | C3' | HB | 58.3° | 57.4° |
HB | C3' | C4' | H4' | 101.6° | 123.6° |
H4' | C4' | C5' | H5'1 | 173.5° | 66.0° |
H4' | C4' | C5' | H5'2 | 66.5° | 174.0° |