4Y3
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2G | PG | doub | 1.48Å | 1.48Å | |
| O3G | PG | sing | 1.52Å | 1.52Å | |
| PG | O3B | sing | 1.59Å | 1.59Å | |
| PG | O1G | sing | 1.54Å | 1.54Å | |
| O3B | PB | sing | 1.59Å | 1.59Å | |
| O1B | PB | doub | 1.50Å | 1.50Å | |
| PB | O2B | sing | 1.51Å | 1.51Å | |
| PB | O3A | sing | 1.57Å | 1.57Å | |
| O3A | PA | sing | 1.55Å | 1.55Å | |
| PA | O2A | doub | 1.50Å | 1.50Å | |
| PA | O5' | sing | 1.62Å | 1.62Å | |
| PA | O1A | sing | 1.53Å | 1.53Å | |
| O5' | C5' | sing | 1.41Å | 1.41Å | |
| S | C2' | sing | 1.51Å | 1.51Å | |
| S | C4' | sing | 1.58Å | 1.58Å | |
| C5' | C4' | sing | 1.54Å | 1.54Å | |
| C2' | C1' | sing | 1.33Å | 1.33Å | |
| C4' | O4' | sing | 1.29Å | 1.29Å | |
| C1' | O4' | sing | 1.62Å | 1.62Å | |
| C1' | N1 | sing | 1.43Å | 1.43Å | |
| C6 | N1 | sing | 1.34Å | 1.34Å | |
| C6 | C5 | doub | 1.41Å | 1.41Å | |
| F | C5 | sing | 1.31Å | 1.31Å | |
| N1 | C2 | sing | 1.33Å | 1.33Å | |
| C5 | C4 | sing | 1.42Å | 1.42Å | |
| C2 | O2 | doub | 1.42Å | 1.42Å | |
| C2 | N3 | sing | 1.33Å | 1.33Å | |
| C4 | N3 | doub | 1.33Å | 1.33Å | |
| C4 | N4 | sing | 1.46Å | 1.46Å | |
| C5' | H1 | sing | 1.10Å | 1.10Å | |
| C5' | H2 | sing | 1.10Å | 1.10Å | |
| C4' | H3 | sing | 1.10Å | 1.10Å | |
| S | H4 | sing | 1.30Å | 1.30Å | |
| S | H5 | sing | 1.30Å | 1.30Å | |
| C2' | H6 | sing | 1.10Å | 1.10Å | |
| C2' | H7 | sing | 1.10Å | 1.10Å | |
| C1' | H8 | sing | 1.10Å | 1.10Å | |
| O1A | H9 | sing | 0.95Å | 0.95Å | |
| O1G | H10 | sing | 0.95Å | 0.95Å | |
| O2B | H11 | sing | 0.95Å | 0.95Å | |
| O3G | H12 | sing | 0.95Å | 0.95Å | |
| N4 | H13 | sing | 1.00Å | 1.00Å | |
| N4 | H14 | sing | 1.00Å | 1.00Å | |
| C6 | H15 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2G | PG | O3G | 109.0° | 109.0° |
| O2G | PG | O3B | 110.3° | 110.3° |
| O2G | PG | O1G | 109.2° | 109.2° |
| O3G | PG | O3B | 109.4° | 109.4° |
| O3G | PG | O1G | 109.7° | 109.7° |
| PG | O3G | H12 | 109.5° | 109.5° |
| O3B | PG | O1G | 109.3° | 109.3° |
| PG | O3B | PB | 124.2° | 124.2° |
| PG | O1G | H10 | 109.5° | 109.5° |
| O3B | PB | O1B | 109.4° | 109.4° |
| O3B | PB | O2B | 109.5° | 109.5° |
| O3B | PB | O3A | 110.6° | 110.6° |
| O1B | PB | O2B | 110.3° | 110.3° |
| O1B | PB | O3A | 108.7° | 108.7° |
| O2B | PB | O3A | 108.4° | 108.4° |
| PB | O2B | H11 | 109.5° | 109.5° |
| PB | O3A | PA | 123.2° | 123.2° |
| O3A | PA | O2A | 108.9° | 108.9° |
| O3A | PA | O5' | 109.5° | 109.5° |
| O3A | PA | O1A | 109.2° | 109.2° |
| O2A | PA | O5' | 111.0° | 111.0° |
| O2A | PA | O1A | 109.7° | 109.7° |
| O5' | PA | O1A | 108.5° | 108.5° |
| PA | O5' | C5' | 120.7° | 120.7° |
| PA | O1A | H9 | 109.5° | 109.5° |
| O5' | C5' | C4' | 109.5° | 109.5° |
| O5' | C5' | H1 | 109.5° | 109.5° |
| O5' | C5' | H2 | 109.5° | 109.5° |
| C2' | S | C4' | 106.1° | 106.1° |
| S | C2' | C1' | 106.6° | 106.6° |
| C2' | S | H4 | 110.3° | 110.3° |
| C2' | S | H5 | 110.3° | 110.3° |
| S | C2' | H6 | 110.2° | 110.2° |
| S | C2' | H7 | 110.2° | 110.2° |
| S | C4' | C5' | 110.9° | 110.9° |
| S | C4' | O4' | 106.3° | 106.3° |
| S | C4' | H3 | 108.2° | 108.2° |
| C4' | S | H4 | 110.3° | 110.3° |
| C4' | S | H5 | 110.3° | 110.3° |
| C5' | C4' | O4' | 110.5° | 110.5° |
| C4' | C5' | H1 | 109.5° | 109.5° |
| C4' | C5' | H2 | 109.5° | 109.5° |
| C5' | C4' | H3 | 108.6° | 108.6° |
| C2' | C1' | O4' | 106.9° | 106.9° |
| C2' | C1' | N1 | 110.6° | 110.6° |
| C1' | C2' | H6 | 110.2° | 110.2° |
| C1' | C2' | H7 | 110.2° | 110.2° |
| C2' | C1' | H8 | 111.2° | 111.2° |
| C4' | O4' | C1' | 108.0° | 108.0° |
| O4' | C4' | H3 | 112.4° | 112.4° |
| O4' | C1' | N1 | 111.1° | 111.1° |
| O4' | C1' | H8 | 107.3° | 107.3° |
| C1' | N1 | C6 | 120.5° | 120.5° |
| C1' | N1 | C2 | 119.8° | 119.8° |
| N1 | C1' | H8 | 109.6° | 109.6° |
| N1 | C6 | C5 | 119.8° | 119.8° |
| C6 | N1 | C2 | 119.7° | 119.7° |
| N1 | C6 | H15 | 120.1° | 120.1° |
| C6 | C5 | F | 121.4° | 121.4° |
| C6 | C5 | C4 | 117.6° | 117.6° |
| C5 | C6 | H15 | 120.1° | 120.1° |
| F | C5 | C4 | 120.9° | 120.9° |
| N1 | C2 | O2 | 118.8° | 118.8° |
| N1 | C2 | N3 | 122.9° | 122.9° |
| C5 | C4 | N3 | 118.9° | 118.9° |
| C5 | C4 | N4 | 120.7° | 120.7° |
| O2 | C2 | N3 | 118.3° | 118.3° |
| C2 | N3 | C4 | 121.1° | 121.1° |
| N3 | C4 | N4 | 120.5° | 120.5° |
| C4 | N4 | H13 | 120.0° | 120.0° |
| C4 | N4 | H14 | 120.0° | 120.0° |
| H1 | C5' | H2 | 109.5° | 109.5° |
| H4 | S | H5 | 109.4° | 109.4° |
| H6 | C2' | H7 | 109.5° | 109.5° |
| H13 | N4 | H14 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2G | PG | O3G | O3B | 120.7° | 120.7° |
| O2G | PG | O3G | O1G | 119.5° | 119.5° |
| O2G | PG | O3B | O1G | 120.0° | 120.0° |
| O2G | PG | O3B | PB | 179.5° | 179.5° |
| O2G | PG | O1G | H10 | 0.0° | 0.0° |
| O2G | PG | O3G | H12 | 0.0° | 0.0° |
| O3G | PG | O3B | O1G | 120.1° | 120.1° |
| O3G | PG | O3B | PB | 59.6° | 59.6° |
| O3G | PG | O1G | H10 | 119.3° | 119.3° |
| PG | O3B | PB | O1B | 102.6° | 102.6° |
| PG | O3B | PB | O2B | 136.4° | 136.4° |
| PG | O3B | PB | O3A | 17.1° | 17.1° |
| O3B | PG | O1G | H10 | 120.7° | 120.7° |
| O3B | PG | O3G | H12 | 120.7° | 120.6° |
| O1G | PG | O3B | PB | 60.5° | 60.5° |
| O1G | PG | O3G | H12 | 119.4° | 119.5° |
| O3B | PB | O1B | O2B | 120.5° | 120.5° |
| O3B | PB | O1B | O3A | 120.8° | 120.8° |
| O3B | PB | O2B | O3A | 120.7° | 120.7° |
| O3B | PB | O3A | PA | 117.1° | 117.1° |
| O3B | PB | O2B | H11 | 120.4° | 120.4° |
| O1B | PB | O2B | O3A | 118.9° | 118.9° |
| O1B | PB | O3A | PA | 122.8° | 122.8° |
| O1B | PB | O2B | H11 | 0.0° | 0.0° |
| O2B | PB | O3A | PA | 2.9° | 2.9° |
| PB | O3A | PA | O2A | 62.1° | 62.1° |
| PB | O3A | PA | O5' | 59.4° | 59.4° |
| PB | O3A | PA | O1A | 178.2° | 178.2° |
| O3A | PB | O2B | H11 | 118.9° | 118.9° |
| O3A | PA | O2A | O5' | 120.6° | 120.6° |
| O3A | PA | O2A | O1A | 119.4° | 119.4° |
| O3A | PA | O5' | O1A | 119.2° | 119.2° |
| O3A | PA | O5' | C5' | 125.9° | 125.9° |
| O3A | PA | O1A | H9 | 119.2° | 119.2° |
| O2A | PA | O5' | O1A | 120.6° | 120.6° |
| O2A | PA | O5' | C5' | 5.6° | 5.6° |
| O2A | PA | O1A | H9 | 0.0° | 0.0° |
| PA | O5' | C5' | C4' | 163.8° | 163.8° |
| PA | O5' | C5' | H1 | 76.2° | 76.2° |
| PA | O5' | C5' | H2 | 43.8° | 43.8° |
| O5' | PA | O1A | H9 | 121.4° | 121.4° |
| O1A | PA | O5' | C5' | 115.0° | 115.0° |
| O5' | C5' | C4' | S | 60.8° | 60.8° |
| O5' | C5' | C4' | H1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H2 | 120.0° | 120.0° |
| O5' | C5' | C4' | O4' | 56.8° | 56.8° |
| O5' | C5' | H1 | H2 | 120.0° | 120.0° |
| O5' | C5' | C4' | H3 | 179.5° | 179.5° |
| C2' | S | C4' | H4 | 119.5° | 119.5° |
| C2' | S | C4' | H5 | 119.5° | 119.5° |
| C2' | S | C4' | C5' | 126.0° | 126.0° |
| S | C2' | C1' | H6 | 119.5° | 119.5° |
| S | C2' | C1' | H7 | 119.5° | 119.5° |
| C2' | S | C4' | O4' | 5.9° | 5.9° |
| S | C2' | C1' | O4' | 21.4° | 21.4° |
| S | C2' | C1' | N1 | 142.4° | 142.4° |
| C2' | S | C4' | H3 | 115.0° | 115.0° |
| C2' | S | H4 | H5 | 121.5° | 121.5° |
| S | C2' | H6 | H7 | 121.3° | 121.3° |
| S | C2' | C1' | H8 | 95.4° | 95.4° |
| S | C4' | C5' | O4' | 117.6° | 117.6° |
| S | C4' | C5' | H3 | 118.7° | 118.7° |
| C4' | S | C2' | C1' | 11.5° | 11.5° |
| S | C4' | O4' | H3 | 118.2° | 118.2° |
| S | C4' | O4' | C1' | 18.0° | 18.0° |
| S | C4' | C5' | H1 | 59.2° | 59.2° |
| S | C4' | C5' | H2 | 179.2° | 179.2° |
| C4' | S | H4 | H5 | 121.5° | 121.5° |
| C4' | S | C2' | H6 | 108.0° | 108.0° |
| C4' | S | C2' | H7 | 131.0° | 131.0° |
| C5' | C4' | O4' | H3 | 121.5° | 121.5° |
| C5' | C4' | O4' | C1' | 138.4° | 138.4° |
| C4' | C5' | H1 | H2 | 120.0° | 120.0° |
| C5' | C4' | S | H4 | 114.5° | 114.5° |
| C5' | C4' | S | H5 | 6.5° | 6.5° |
| C2' | C1' | O4' | C4' | 26.9° | 26.9° |
| C2' | C1' | O4' | N1 | 120.8° | 120.8° |
| C2' | C1' | O4' | H8 | 119.4° | 119.4° |
| C2' | C1' | N1 | H8 | 123.0° | 123.0° |
| C2' | C1' | N1 | C6 | 92.0° | 92.0° |
| C2' | C1' | N1 | C2 | 88.1° | 88.1° |
| C1' | C2' | S | H4 | 108.0° | 108.0° |
| C1' | C2' | S | H5 | 131.0° | 131.0° |
| C1' | C2' | H6 | H7 | 121.4° | 121.4° |
| C4' | O4' | C1' | N1 | 147.7° | 147.7° |
| O4' | C4' | C5' | H1 | 176.8° | 176.8° |
| O4' | C4' | C5' | H2 | 63.2° | 63.2° |
| O4' | C4' | S | H4 | 125.4° | 125.4° |
| O4' | C4' | S | H5 | 113.6° | 113.6° |
| C4' | O4' | C1' | H8 | 92.5° | 92.5° |
| O4' | C1' | N1 | H8 | 118.4° | 118.4° |
| O4' | C1' | N1 | C6 | 26.6° | 26.6° |
| O4' | C1' | N1 | C2 | 153.3° | 153.3° |
| C1' | O4' | C4' | H3 | 100.2° | 100.2° |
| O4' | C1' | C2' | H6 | 98.1° | 98.1° |
| O4' | C1' | C2' | H7 | 140.9° | 140.9° |
| C1' | N1 | C6 | C2 | 179.9° | 179.9° |
| C1' | N1 | C6 | C5 | 179.9° | 179.9° |
| C1' | N1 | C2 | O2 | 0.1° | 0.1° |
| C1' | N1 | C2 | N3 | 179.9° | 179.9° |
| N1 | C1' | C2' | H6 | 22.9° | 22.9° |
| N1 | C1' | C2' | H7 | 98.0° | 98.0° |
| C1' | N1 | C6 | H15 | 0.2° | 0.2° |
| N1 | C6 | C5 | H15 | 180.0° | 180.0° |
| N1 | C6 | C5 | F | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.1° |
| C6 | N1 | C2 | O2 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| C6 | N1 | C1' | H8 | 145.0° | 145.0° |
| C6 | C5 | F | C4 | 179.9° | 179.9° |
| C5 | C6 | N1 | C2 | 0.0° | 0.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C6 | C5 | C4 | N4 | 179.9° | 179.9° |
| F | C5 | C4 | N3 | 180.0° | 180.0° |
| F | C5 | C4 | N4 | 0.0° | 0.0° |
| F | C5 | C6 | H15 | 0.0° | 0.0° |
| N1 | C2 | O2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| C2 | N1 | C1' | H8 | 34.9° | 34.9° |
| C2 | N1 | C6 | H15 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 0.1° | 0.1° |
| C5 | C4 | N3 | N4 | 179.9° | 179.9° |
| C5 | C4 | N4 | H13 | 179.9° | 179.9° |
| C5 | C4 | N4 | H14 | 0.0° | 0.0° |
| C4 | C5 | C6 | H15 | 179.9° | 179.9° |
| O2 | C2 | N3 | C4 | 179.9° | 179.9° |
| C2 | N3 | C4 | N4 | 179.9° | 179.9° |
| N3 | C4 | N4 | H13 | 0.0° | 0.0° |
| N3 | C4 | N4 | H14 | 180.0° | 180.0° |
| C4 | N4 | H13 | H14 | 179.9° | 179.9° |
| H1 | C5' | C4' | H3 | 59.5° | 59.5° |
| H2 | C5' | C4' | H3 | 60.5° | 60.5° |
| H3 | C4' | S | H4 | 4.5° | 4.5° |
| H3 | C4' | S | H5 | 125.5° | 125.5° |
| H4 | S | C2' | H6 | 132.5° | 132.5° |
| H4 | S | C2' | H7 | 11.6° | 11.6° |
| H5 | S | C2' | H6 | 11.4° | 11.4° |
| H5 | S | C2' | H7 | 109.5° | 109.5° |
| H6 | C2' | C1' | H8 | 145.0° | 145.0° |
| H7 | C2' | C1' | H8 | 24.1° | 24.1° |
