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Summary Geometry Related PDB entries

4V2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OAA	CAJ	sing	1.36Å	1.36Å
CAJ	CAF	sing	1.39Å	1.39Å	Aromatic
CAJ	CAD	doub	1.39Å	1.39Å	Aromatic
CAF	CAL	doub	1.39Å	1.39Å	Aromatic
CAD	CAC	sing	1.38Å	1.39Å	Aromatic
CAC	CAE	doub	1.38Å	1.39Å	Aromatic
CAE	CAL	sing	1.40Å	1.39Å	Aromatic
CAL	CAM	sing	1.48Å	1.39Å
CAM	OAI	sing	1.35Å	1.36Å	Aromatic
CAM	NAH	doub	1.31Å	1.33Å	Aromatic
OAI	CAK	sing	1.35Å	1.36Å	Aromatic
NAH	NAG	sing	1.29Å	1.24Å	Aromatic
NAG	CAK	doub	1.31Å	1.33Å	Aromatic
CAK	SAB	sing	1.76Å	1.75Å
OAA	HAA	sing	0.97Å	0.95Å
CAF	HAF	sing	1.08Å	1.08Å
CAD	HAD	sing	1.08Å	1.08Å
CAC	HAC	sing	1.08Å	1.08Å
CAE	HAE	sing	1.08Å	1.08Å
SAB	HAB	sing	1.41Å	1.30Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OAA	CAJ	CAF	120.0°	119.9°
OAA	CAJ	CAD	120.0°	120.0°
CAJ	OAA	HAA	109.5°	114.0°
CAF	CAJ	CAD	120.0°	120.0°
CAJ	CAF	CAL	120.0°	119.8°
CAJ	CAF	HAF	120.0°	120.1°
CAJ	CAD	CAC	120.0°	120.2°
CAJ	CAD	HAD	120.0°	119.9°
CAF	CAL	CAE	120.0°	119.8°
CAF	CAL	CAM	120.0°	120.1°
CAL	CAF	HAF	120.0°	120.2°
CAD	CAC	CAE	120.0°	120.2°
CAC	CAD	HAD	120.0°	119.9°
CAD	CAC	HAC	120.0°	119.9°
CAC	CAE	CAL	120.0°	119.9°
CAE	CAC	HAC	120.0°	119.9°
CAC	CAE	HAE	120.0°	120.0°
CAE	CAL	CAM	120.0°	120.1°
CAL	CAE	HAE	120.0°	120.1°
CAL	CAM	OAI	122.5°	126.3°
CAL	CAM	NAH	128.5°	126.3°
OAI	CAM	NAH	109.0°	107.4°
CAM	OAI	CAK	102.5°	106.4°
CAM	NAH	NAG	109.9°	109.4°
OAI	CAK	NAG	109.8°	107.4°
OAI	CAK	SAB	125.1°	126.3°
NAH	NAG	CAK	108.8°	109.5°
NAG	CAK	SAB	125.0°	126.3°
CAK	SAB	HAB	102.0°	100.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OAA	CAJ	CAF	CAD	180.0°	179.7°
OAA	CAJ	CAF	CAL	180.0°	180.0°
OAA	CAJ	CAD	CAC	180.0°	180.0°
OAA	CAJ	CAF	HAF	0.0°	0.0°
OAA	CAJ	CAD	HAD	0.0°	0.1°
CAJ	CAF	CAL	HAF	180.0°	180.0°
CAF	CAJ	CAD	CAC	0.0°	0.3°
CAJ	CAF	CAL	CAE	0.0°	0.0°
CAJ	CAF	CAL	CAM	180.0°	180.0°
CAF	CAJ	OAA	HAA	180.0°	90.0°
CAF	CAJ	CAD	HAD	180.0°	179.8°
CAD	CAJ	CAF	CAL	0.0°	0.3°
CAJ	CAD	CAC	HAD	180.0°	179.9°
CAJ	CAD	CAC	CAE	0.0°	0.1°
CAD	CAJ	OAA	HAA	0.0°	90.3°
CAD	CAJ	CAF	HAF	180.0°	179.7°
CAJ	CAD	CAC	HAC	180.0°	180.0°
CAF	CAL	CAE	CAC	0.0°	0.2°
CAF	CAL	CAE	CAM	179.9°	180.0°
CAF	CAL	CAM	OAI	0.1°	180.0°
CAF	CAL	CAM	NAH	180.0°	0.3°
CAF	CAL	CAE	HAE	180.0°	179.9°
CAD	CAC	CAE	HAC	180.0°	179.9°
CAD	CAC	CAE	CAL	0.0°	0.2°
CAD	CAC	CAE	HAE	180.0°	179.9°
CAC	CAE	CAL	HAE	180.0°	179.7°
CAC	CAE	CAL	CAM	180.0°	179.8°
CAE	CAC	CAD	HAD	180.0°	180.0°
CAE	CAL	CAM	OAI	180.0°	0.0°
CAE	CAL	CAM	NAH	0.0°	179.7°
CAE	CAL	CAF	HAF	180.0°	180.0°
CAL	CAE	CAC	HAC	180.0°	179.7°
CAL	CAM	OAI	NAH	180.0°	179.8°
CAL	CAM	OAI	CAK	180.0°	180.0°
CAL	CAM	NAH	NAG	179.9°	180.0°
CAM	CAL	CAF	HAF	0.1°	0.0°
CAM	CAL	CAE	HAE	0.1°	0.1°
OAI	CAM	NAH	NAG	0.0°	0.2°
CAM	OAI	CAK	NAG	0.0°	0.1°
CAM	OAI	CAK	SAB	180.0°	180.0°
NAH	CAM	OAI	CAK	0.0°	0.2°
CAM	NAH	NAG	CAK	0.0°	0.2°
OAI	CAK	NAG	NAH	0.0°	0.0°
OAI	CAK	NAG	SAB	180.0°	179.8°
OAI	CAK	SAB	HAB	0.0°	180.0°
NAH	NAG	CAK	SAB	180.0°	179.8°
NAG	CAK	SAB	HAB	180.0°	0.2°
HAD	CAD	CAC	HAC	0.0°	0.1°
HAC	CAC	CAE	HAE	0.0°	0.0°

248942

PDB entries from 2026-02-11

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