English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

4PB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.51Å	1.50Å
C1	N	sing	1.35Å	1.33Å
C1	O1	doub	1.21Å	1.23Å
C2	C3	sing	1.53Å	1.53Å
C2	H21	sing	1.09Å	1.11Å
C2	H22	sing	1.09Å	1.11Å
C3	C4	sing	1.53Å	1.55Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.12Å
C4	P	sing	1.82Å	1.81Å
C4	H41	sing	1.09Å	1.11Å
C4	H42	sing	1.09Å	1.11Å
N	ON	sing	1.42Å	1.40Å
N	HN	sing	0.97Å	1.02Å
ON	HON	sing	0.97Å	0.95Å
P	O1P	doub	1.57Å	1.54Å
P	O2P	sing	1.57Å	1.53Å
P	O3P	sing	1.57Å	1.54Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	N	115.4°	120.0°
C2	C1	O1	119.7°	120.0°
C1	C2	C3	103.1°	109.5°
C1	C2	H21	114.6°	109.5°
C1	C2	H22	114.6°	109.5°
N	C1	O1	124.9°	120.0°
C1	N	ON	123.6°	120.0°
C1	N	HN	115.4°	120.0°
C3	C2	H21	114.6°	109.4°
C3	C2	H22	114.6°	109.4°
C2	C3	C4	117.3°	109.5°
C2	C3	H31	109.4°	109.5°
C2	C3	H32	109.4°	109.5°
H21	C2	H22	95.9°	109.5°
C4	C3	H31	109.4°	109.4°
C4	C3	H32	109.4°	109.4°
C3	C4	P	113.0°	109.5°
C3	C4	H41	110.9°	109.5°
C3	C4	H42	110.9°	109.5°
H31	C3	H32	100.7°	109.5°
P	C4	H41	110.9°	109.5°
P	C4	H42	110.9°	109.5°
C4	P	O1P	106.4°	109.5°
C4	P	O2P	110.0°	109.5°
C4	P	O3P	113.3°	109.5°
H41	C4	H42	99.4°	109.4°
ON	N	HN	121.1°	120.0°
N	ON	HON	123.6°	106.8°
O1P	P	O2P	110.0°	109.5°
O1P	P	O3P	109.7°	109.5°
O2P	P	O3P	107.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	N	O1	179.6°	180.0°
C1	C2	C3	H21	125.3°	120.0°
C1	C2	C3	H22	125.2°	120.0°
C1	C2	H21	H22	120.5°	120.0°
C1	C2	C3	C4	171.5°	180.0°
C1	C2	C3	H31	63.2°	60.0°
C1	C2	C3	H32	46.2°	60.0°
C2	C1	N	ON	179.2°	180.0°
C2	C1	N	HN	0.8°	0.0°
N	C1	C2	C3	100.2°	180.0°
N	C1	C2	H21	134.5°	60.0°
N	C1	C2	H22	25.0°	60.0°
C1	N	ON	HN	180.0°	180.0°
C1	N	ON	HON	180.0°	180.0°
O1	C1	C2	C3	79.4°	0.0°
O1	C1	C2	H21	45.9°	120.0°
O1	C1	C2	H22	155.4°	120.0°
O1	C1	N	ON	1.2°	0.0°
O1	C1	N	HN	178.7°	180.0°
C3	C2	H21	H22	120.5°	120.0°
C2	C3	C4	H31	125.3°	120.0°
C2	C3	C4	H32	125.3°	120.0°
C2	C3	H31	H32	115.2°	120.0°
C2	C3	C4	P	170.9°	180.0°
C2	C3	C4	H41	63.9°	60.0°
C2	C3	C4	H42	45.6°	60.0°
H21	C2	C3	C4	46.2°	60.0°
H21	C2	C3	H31	171.5°	180.0°
H21	C2	C3	H32	79.0°	60.0°
H22	C2	C3	C4	63.3°	60.0°
H22	C2	C3	H31	62.0°	60.0°
H22	C2	C3	H32	171.5°	180.0°
C4	C3	H31	H32	115.1°	119.9°
C3	C4	P	H41	125.2°	120.0°
C3	C4	P	H42	125.3°	120.0°
C3	C4	H41	H42	116.8°	120.0°
C3	C4	P	O1P	163.5°	65.0°
C3	C4	P	O2P	77.3°	175.0°
C3	C4	P	O3P	42.9°	55.0°
H31	C3	C4	P	45.6°	60.0°
H31	C3	C4	H41	170.8°	180.0°
H31	C3	C4	H42	79.7°	60.0°
H32	C3	C4	P	63.8°	60.0°
H32	C3	C4	H41	61.4°	60.0°
H32	C3	C4	H42	170.9°	180.0°
P	C4	H41	H42	116.8°	120.0°
C4	P	O1P	O2P	119.1°	120.0°
C4	P	O1P	O3P	122.9°	120.0°
C4	P	O2P	O3P	123.7°	120.0°
H41	C4	P	O1P	38.3°	55.0°
H41	C4	P	O2P	157.4°	65.0°
H41	C4	P	O3P	82.3°	175.1°
H42	C4	P	O1P	71.2°	174.9°
H42	C4	P	O2P	47.9°	54.9°
H42	C4	P	O3P	168.2°	65.0°
HN	N	ON	HON	0.0°	0.0°
O1P	P	O2P	O3P	119.4°	120.0°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon