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Summary Geometry Related PDB entries

4MU

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5	C6	doub	1.37Å	1.38Å	Aromatic
C5	C4A	sing	1.40Å	1.40Å	Aromatic
C6	C7	sing	1.39Å	1.40Å	Aromatic
C7	C8	doub	1.38Å	1.37Å	Aromatic
C7	O1'	sing	1.36Å	1.32Å
C2	C3	sing	1.41Å	1.42Å
C2	O2	doub	1.22Å	1.25Å
C2	O1	sing	1.34Å	1.36Å
C3	C4	doub	1.36Å	1.41Å
C4	CM4	sing	1.51Å	1.52Å
C4	C4A	sing	1.46Å	1.48Å
O1	C8A	sing	1.35Å	1.37Å
C4A	C8A	doub	1.41Å	1.48Å	Aromatic
C8A	C8	sing	1.39Å	1.38Å	Aromatic
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
CM4	HM4	sing	1.09Å	1.10Å
CM4	HM4A	sing	1.09Å	1.10Å
CM4	HM4B	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
O1'	HO1'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C5	C4A	116.8°	119.8°
C5	C6	C7	121.3°	120.4°
C6	C5	H5	121.6°	120.1°
C5	C6	H6	119.3°	119.8°
C5	C4A	C4	121.4°	121.0°
C5	C4A	C8A	121.4°	120.0°
C4A	C5	H5	121.6°	120.1°
C6	C7	C8	123.7°	120.5°
C6	C7	O1'	120.9°	119.7°
C7	C6	H6	119.3°	119.8°
C8	C7	O1'	115.4°	119.7°
C7	C8	C8A	117.7°	119.8°
C7	C8	H8	121.1°	120.1°
C7	O1'	HO1'	109.5°	114.0°
C3	C2	O2	123.5°	119.2°
C3	C2	O1	121.9°	121.7°
C2	C3	C4	121.1°	119.8°
C2	C3	H3	119.4°	120.1°
O2	C2	O1	114.6°	119.2°
C2	O1	C8A	121.0°	121.5°
C3	C4	CM4	125.8°	120.9°
C3	C4	C4A	118.0°	118.2°
C4	C3	H3	119.5°	120.1°
CM4	C4	C4A	116.1°	120.9°
C4	CM4	HM4	109.5°	109.5°
C4	CM4	HM4A	109.5°	109.5°
C4	CM4	HM4B	109.4°	109.5°
C4	C4A	C8A	117.1°	119.0°
O1	C8A	C4A	120.9°	119.8°
O1	C8A	C8	120.2°	120.7°
C4A	C8A	C8	118.9°	119.4°
C8A	C8	H8	121.2°	120.1°
HM4	CM4	HM4A	109.4°	109.5°
HM4	CM4	HM4B	109.4°	109.4°
HM4A	CM4	HM4B	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C5	C4A	H5	180.0°	179.7°
C5	C6	C7	H6	180.0°	179.9°
C5	C6	C7	C8	1.5°	0.0°
C5	C6	C7	O1'	179.7°	180.0°
C6	C5	C4A	C4	179.9°	180.0°
C6	C5	C4A	C8A	2.5°	0.0°
C4A	C5	C6	C7	1.6°	0.0°
C5	C4A	C4	C3	177.9°	180.0°
C5	C4A	C4	CM4	1.1°	0.1°
C5	C4A	C4	C8A	177.6°	180.0°
C5	C4A	C8A	O1	177.5°	180.0°
C5	C4A	C8A	C8	0.4°	0.1°
C4A	C5	C6	H6	178.4°	180.0°
C6	C7	C8	O1'	178.9°	180.0°
C6	C7	C8	C8A	3.7°	0.0°
C7	C6	C5	H5	178.4°	179.7°
C6	C7	C8	H8	176.3°	180.0°
C6	C7	O1'	HO1'	92.7°	90.0°
C7	C8	C8A	O1	179.5°	180.0°
C7	C8	C8A	C4A	2.6°	0.0°
C7	C8	C8A	H8	180.0°	180.0°
C8	C7	C6	H6	178.5°	180.0°
C8	C7	O1'	HO1'	86.2°	90.0°
O1'	C7	C8	C8A	177.5°	180.0°
O1'	C7	C6	H6	0.3°	0.1°
O1'	C7	C8	H8	2.5°	0.0°
C3	C2	O2	O1	179.1°	179.8°
C2	C3	C4	H3	180.0°	179.9°
C2	C3	C4	CM4	179.4°	179.9°
C2	C3	C4	C4A	0.4°	0.1°
C3	C2	O1	C8A	2.3°	0.1°
O2	C2	C3	C4	179.1°	180.0°
O2	C2	O1	C8A	178.6°	179.9°
O2	C2	C3	H3	0.9°	0.1°
O1	C2	C3	C4	1.8°	0.1°
C2	O1	C8A	C4A	1.4°	0.0°
C2	O1	C8A	C8	179.2°	180.0°
O1	C2	C3	H3	178.2°	180.0°
C3	C4	CM4	C4A	179.0°	179.9°
C3	C4	C4A	C8A	0.4°	0.0°
C3	C4	CM4	HM4	152.1°	0.0°
C3	C4	CM4	HM4A	32.1°	120.0°
C3	C4	CM4	HM4B	88.0°	120.0°
CM4	C4	C4A	C8A	178.7°	179.9°
CM4	C4	C3	H3	0.6°	0.1°
C4	CM4	HM4	HM4A	120.0°	120.1°
C4	CM4	HM4	HM4B	120.0°	120.0°
C4	CM4	HM4A	HM4B	120.0°	120.0°
C4	C4A	C8A	O1	0.1°	0.0°
C4	C4A	C8A	C8	177.9°	179.9°
C4	C4A	C5	H5	0.0°	0.3°
C4A	C4	C3	H3	179.6°	180.0°
C4A	C4	CM4	HM4	26.9°	180.0°
C4A	C4	CM4	HM4A	146.9°	59.9°
C4A	C4	CM4	HM4B	93.1°	60.1°
O1	C8A	C4A	C8	177.8°	180.0°
O1	C8A	C8	H8	0.5°	0.0°
C8A	C4A	C5	H5	177.5°	179.7°
C4A	C8A	C8	H8	177.3°	179.9°
H5	C5	C6	H6	1.6°	0.3°
HM4	CM4	HM4A	HM4B	120.0°	119.9°

246704

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