4MF
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3P | P | sing | 1.62Å | 1.59Å | |
O3P | HOP3 | sing | 0.98Å | 0.95Å | |
O2P | P | sing | 1.62Å | 1.51Å | |
O2P | HOP2 | sing | 0.98Å | 0.95Å | |
P | O1P | doub | 1.50Å | 1.51Å | |
P | O5' | sing | 1.62Å | 1.61Å | |
O5' | C5' | sing | 1.42Å | 1.43Å | |
C5' | C4' | sing | 1.52Å | 1.54Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
C4' | C3' | sing | 1.52Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | H4' | sing | 1.10Å | 1.10Å | |
C3' | C2' | sing | 1.51Å | 1.52Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | H3T | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.52Å | 1.53Å | |
C2' | H2'1 | sing | 1.10Å | 1.10Å | |
C2' | H2'2 | sing | 1.09Å | 1.10Å | |
C1' | N1 | sing | 1.46Å | 1.46Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C1' | H1' | sing | 1.10Å | 1.10Å | |
N1 | C2 | sing | 1.37Å | 1.23Å | Aromatic |
N1 | C7A | sing | 1.38Å | 1.32Å | Aromatic |
C7A | C3A | sing | 1.40Å | 1.28Å | Aromatic |
C7A | C7 | doub | 1.40Å | 1.26Å | Aromatic |
C7 | C6 | sing | 1.40Å | 1.20Å | Aromatic |
C7 | H7 | sing | 1.08Å | 1.08Å | |
C6 | C5 | doub | 1.39Å | 1.21Å | Aromatic |
C6 | H6 | sing | 1.09Å | 1.08Å | |
C5 | C4 | sing | 1.40Å | 1.27Å | Aromatic |
C5 | H5 | sing | 1.09Å | 1.08Å | |
C4 | C4M | sing | 1.50Å | 1.32Å | |
C4 | C3A | doub | 1.41Å | 1.33Å | Aromatic |
C4M | H4M1 | sing | 1.10Å | 1.10Å | |
C4M | H4M2 | sing | 1.10Å | 1.10Å | |
C4M | H4M3 | sing | 1.10Å | 1.10Å | |
C3A | C3 | sing | 1.42Å | 1.26Å | Aromatic |
C3 | C2 | doub | 1.38Å | 1.22Å | Aromatic |
C3 | H3 | sing | 1.08Å | 1.08Å | |
C2 | H2 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | O3P | HOP3 | 109.5° | 118.9° |
O3P | P | O2P | 87.5° | 103.3° |
O3P | P | O1P | 100.1° | 115.3° |
O3P | P | O5' | 132.5° | 103.7° |
P | O2P | HOP2 | 109.5° | 118.9° |
O2P | P | O1P | 121.5° | 115.0° |
O2P | P | O5' | 107.9° | 102.9° |
O1P | P | O5' | 108.1° | 115.0° |
P | O5' | C5' | 121.1° | 118.5° |
O5' | C5' | C4' | 114.0° | 108.7° |
O5' | C5' | H5'1 | 108.0° | 109.2° |
O5' | C5' | H5'2 | 107.0° | 109.2° |
C4' | C5' | H5'1 | 108.0° | 110.1° |
C4' | C5' | H5'2 | 107.0° | 110.1° |
C5' | C4' | C3' | 116.8° | 112.7° |
C5' | C4' | O4' | 110.6° | 108.0° |
C5' | C4' | H4' | 102.1° | 109.4° |
H5'1 | C5' | H5'2 | 113.0° | 109.6° |
C3' | C4' | O4' | 104.7° | 106.8° |
C3' | C4' | H4' | 108.2° | 112.0° |
C4' | C3' | C2' | 106.7° | 103.2° |
C4' | C3' | O3' | 110.1° | 109.6° |
C4' | C3' | H3' | 111.0° | 114.0° |
O4' | C4' | H4' | 114.7° | 107.7° |
C4' | O4' | C1' | 110.0° | 108.7° |
C2' | C3' | O3' | 109.6° | 108.4° |
C2' | C3' | H3' | 111.4° | 113.7° |
C3' | C2' | C1' | 104.5° | 101.6° |
C3' | C2' | H2'1 | 111.2° | 110.0° |
C3' | C2' | H2'2 | 112.2° | 114.2° |
O3' | C3' | H3' | 108.1° | 107.8° |
C3' | O3' | H3T | 109.5° | 106.6° |
C1' | C2' | H2'1 | 111.2° | 110.5° |
C1' | C2' | H2'2 | 112.3° | 111.7° |
C2' | C1' | N1 | 108.2° | 114.3° |
C2' | C1' | O4' | 107.4° | 106.7° |
C2' | C1' | H1' | 111.4° | 111.7° |
H2'1 | C2' | H2'2 | 105.7° | 108.7° |
N1 | C1' | O4' | 108.7° | 110.0° |
N1 | C1' | H1' | 110.2° | 105.9° |
C1' | N1 | C2 | 124.0° | 124.6° |
C1' | N1 | C7A | 126.2° | 125.8° |
O4' | C1' | H1' | 110.9° | 108.1° |
C2 | N1 | C7A | 109.8° | 109.6° |
N1 | C2 | C3 | 109.9° | 108.2° |
N1 | C2 | H2 | 125.1° | 120.8° |
N1 | C7A | C3A | 102.0° | 107.3° |
N1 | C7A | C7 | 136.1° | 129.9° |
C3A | C7A | C7 | 121.9° | 122.7° |
C7A | C3A | C4 | 117.5° | 118.7° |
C7A | C3A | C3 | 110.6° | 107.1° |
C7A | C7 | C6 | 117.8° | 117.5° |
C7A | C7 | H7 | 121.1° | 121.7° |
C6 | C7 | H7 | 121.1° | 120.8° |
C7 | C6 | C5 | 123.5° | 121.1° |
C7 | C6 | H6 | 118.3° | 119.4° |
C5 | C6 | H6 | 118.3° | 119.5° |
C6 | C5 | C4 | 122.3° | 120.7° |
C6 | C5 | H5 | 118.8° | 119.1° |
C4 | C5 | H5 | 118.8° | 120.1° |
C5 | C4 | C4M | 121.7° | 118.4° |
C5 | C4 | C3A | 115.6° | 119.2° |
C4M | C4 | C3A | 122.8° | 122.4° |
C4 | C4M | H4M1 | 109.5° | 110.2° |
C4 | C4M | H4M2 | 109.5° | 111.1° |
C4 | C4M | H4M3 | 109.5° | 111.1° |
C4 | C3A | C3 | 131.9° | 134.2° |
H4M1 | C4M | H4M2 | 109.5° | 108.7° |
H4M1 | C4M | H4M3 | 109.5° | 108.7° |
H4M2 | C4M | H4M3 | 109.5° | 107.0° |
C3A | C3 | C2 | 107.7° | 107.7° |
C3A | C3 | H3 | 126.2° | 126.9° |
C2 | C3 | H3 | 126.1° | 125.4° |
C3 | C2 | H2 | 125.1° | 130.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3P | P | O2P | O1P | 100.3° | 126.5° |
O3P | P | O2P | O5' | 134.2° | 107.7° |
O3P | P | O2P | HOP2 | 89.0° | 78.5° |
O3P | P | O1P | O5' | 141.3° | 120.6° |
O3P | P | O5' | C5' | 36.8° | 53.2° |
HOP3 | O3P | P | O2P | 118.1° | 77.5° |
HOP3 | O3P | P | O1P | 120.3° | 48.8° |
HOP3 | O3P | P | O5' | 6.0° | 175.4° |
O2P | P | O1P | O5' | 125.4° | 119.3° |
O2P | P | O5' | C5' | 140.3° | 54.2° |
HOP2 | O2P | P | O1P | 11.3° | 48.0° |
HOP2 | O2P | P | O5' | 136.8° | 173.9° |
O1P | P | O5' | C5' | 86.6° | 180.0° |
P | O5' | C5' | C4' | 91.1° | 180.0° |
P | O5' | C5' | H5'1 | 148.9° | 59.9° |
P | O5' | C5' | H5'2 | 27.0° | 59.9° |
O5' | C5' | C4' | H5'1 | 120.0° | 119.6° |
O5' | C5' | C4' | H5'2 | 118.0° | 119.5° |
O5' | C5' | H5'1 | H5'2 | 118.1° | 119.6° |
O5' | C5' | C4' | C3' | 10.1° | 179.5° |
O5' | C5' | C4' | O4' | 109.6° | 61.8° |
O5' | C5' | C4' | H4' | 127.9° | 55.2° |
C4' | C5' | H5'1 | H5'2 | 118.2° | 121.2° |
C5' | C4' | C3' | O4' | 122.8° | 118.5° |
C5' | C4' | C3' | H4' | 114.4° | 123.8° |
C5' | C4' | O4' | H4' | 114.8° | 118.0° |
C5' | C4' | C3' | C2' | 144.4° | 92.6° |
C5' | C4' | C3' | O3' | 96.8° | 152.1° |
C5' | C4' | C3' | H3' | 22.8° | 31.2° |
C5' | C4' | O4' | C1' | 153.6° | 116.0° |
H5'1 | C5' | C4' | C3' | 109.9° | 60.0° |
H5'1 | C5' | C4' | O4' | 130.4° | 57.8° |
H5'1 | C5' | C4' | H4' | 7.9° | 174.7° |
H5'2 | C5' | C4' | C3' | 128.2° | 60.9° |
H5'2 | C5' | C4' | O4' | 8.5° | 178.7° |
H5'2 | C5' | C4' | H4' | 114.0° | 64.3° |
C3' | C4' | O4' | H4' | 118.5° | 120.5° |
C4' | C3' | C2' | O3' | 119.2° | 116.2° |
C4' | C3' | C2' | H3' | 121.2° | 123.9° |
C4' | C3' | O3' | H3' | 121.4° | 124.6° |
C4' | C3' | O3' | H3T | 153.8° | 46.6° |
C4' | C3' | C2' | C1' | 9.0° | 34.8° |
C4' | C3' | C2' | H2'1 | 129.0° | 82.2° |
C4' | C3' | C2' | H2'2 | 112.9° | 155.2° |
C3' | C4' | O4' | C1' | 26.9° | 5.5° |
O4' | C4' | C3' | C2' | 21.6° | 25.9° |
O4' | C4' | C3' | O3' | 140.5° | 89.4° |
O4' | C4' | C3' | H3' | 99.9° | 149.7° |
C4' | O4' | C1' | C2' | 21.6° | 17.3° |
C4' | O4' | C1' | N1 | 138.4° | 141.8° |
C4' | O4' | C1' | H1' | 100.4° | 103.1° |
H4' | C4' | C3' | C2' | 101.2° | 143.6° |
H4' | C4' | C3' | O3' | 17.6° | 28.3° |
H4' | C4' | C3' | H3' | 137.2° | 92.6° |
H4' | C4' | O4' | C1' | 91.6° | 126.0° |
C2' | C3' | O3' | H3' | 121.6° | 123.5° |
C2' | C3' | O3' | H3T | 89.2° | 65.3° |
C3' | C2' | C1' | H2'1 | 120.0° | 116.7° |
C3' | C2' | C1' | H2'2 | 121.9° | 122.2° |
C3' | C2' | H2'1 | H2'2 | 122.0° | 125.7° |
C3' | C2' | C1' | N1 | 124.0° | 154.5° |
C3' | C2' | C1' | O4' | 6.8° | 32.7° |
C3' | C2' | C1' | H1' | 114.8° | 85.2° |
O3' | C3' | C2' | C1' | 128.2° | 81.3° |
O3' | C3' | C2' | H2'1 | 111.8° | 161.6° |
O3' | C3' | C2' | H2'2 | 6.3° | 39.1° |
H3' | C3' | O3' | H3T | 32.4° | 171.2° |
H3' | C3' | C2' | C1' | 112.2° | 158.8° |
H3' | C3' | C2' | H2'1 | 7.8° | 41.7° |
H3' | C3' | C2' | H2'2 | 125.9° | 80.8° |
C1' | C2' | H2'1 | H2'2 | 122.0° | 122.9° |
C2' | C1' | N1 | O4' | 116.3° | 120.0° |
C2' | C1' | N1 | H1' | 122.0° | 123.5° |
C2' | C1' | O4' | H1' | 121.9° | 120.3° |
C2' | C1' | N1 | C2 | 25.8° | 86.6° |
C2' | C1' | N1 | C7A | 154.4° | 93.4° |
H2'1 | C2' | C1' | N1 | 4.0° | 37.8° |
H2'1 | C2' | C1' | O4' | 113.2° | 84.0° |
H2'1 | C2' | C1' | H1' | 125.2° | 158.1° |
H2'2 | C2' | C1' | N1 | 114.1° | 83.3° |
H2'2 | C2' | C1' | O4' | 128.7° | 154.9° |
H2'2 | C2' | C1' | H1' | 7.1° | 37.0° |
N1 | C1' | O4' | H1' | 121.3° | 115.2° |
C1' | N1 | C2 | C7A | 179.9° | 179.9° |
C1' | N1 | C7A | C3A | 180.0° | 179.9° |
C1' | N1 | C7A | C7 | 0.1° | 0.1° |
C1' | N1 | C2 | C3 | 180.0° | 179.9° |
C1' | N1 | C2 | H2 | 0.0° | 0.1° |
O4' | C1' | N1 | C2 | 90.6° | 33.5° |
O4' | C1' | N1 | C7A | 89.3° | 146.6° |
H1' | C1' | N1 | C2 | 147.7° | 150.0° |
H1' | C1' | N1 | C7A | 32.4° | 30.1° |
C2 | N1 | C7A | C3A | 0.1° | 0.0° |
C2 | N1 | C7A | C7 | 179.8° | 180.0° |
N1 | C2 | C3 | C3A | 0.1° | 0.1° |
N1 | C2 | C3 | H2 | 180.0° | 180.0° |
N1 | C2 | C3 | H3 | 179.9° | 180.0° |
N1 | C7A | C3A | C7 | 179.9° | 180.0° |
N1 | C7A | C7 | C6 | 173.2° | 180.0° |
N1 | C7A | C7 | H7 | 6.8° | 0.0° |
N1 | C7A | C3A | C4 | 179.9° | 180.0° |
N1 | C7A | C3A | C3 | 0.1° | 0.0° |
C7A | N1 | C2 | C3 | 0.1° | 0.0° |
C7A | N1 | C2 | H2 | 179.9° | 180.0° |
C3A | C7A | C7 | C6 | 6.7° | 0.0° |
C3A | C7A | C7 | H7 | 173.3° | 180.0° |
C7A | C3A | C4 | C5 | 0.0° | 0.0° |
C7A | C3A | C4 | C4M | 179.7° | 179.9° |
C7A | C3A | C4 | C3 | 179.7° | 179.9° |
C7A | C3A | C3 | C2 | 0.0° | 0.1° |
C7A | C3A | C3 | H3 | 180.0° | 180.0° |
C7A | C7 | C6 | H7 | 180.0° | 179.9° |
C7A | C7 | C6 | C5 | 14.1° | 0.1° |
C7A | C7 | C6 | H6 | 165.9° | 180.0° |
C7 | C7A | C3A | C4 | 0.1° | 0.0° |
C7 | C7A | C3A | C3 | 179.8° | 180.0° |
C7 | C6 | C5 | H6 | 180.0° | 179.9° |
C7 | C6 | C5 | C4 | 14.6° | 0.1° |
C7 | C6 | C5 | H5 | 165.4° | 180.0° |
H7 | C7 | C6 | C5 | 165.9° | 180.0° |
H7 | C7 | C6 | H6 | 14.1° | 0.0° |
C6 | C5 | C4 | H5 | 180.0° | 180.0° |
C6 | C5 | C4 | C4M | 173.4° | 180.0° |
C6 | C5 | C4 | C3A | 6.8° | 0.0° |
H6 | C6 | C5 | C4 | 165.4° | 180.0° |
H6 | C6 | C5 | H5 | 14.6° | 0.0° |
C5 | C4 | C4M | C3A | 179.8° | 179.9° |
C5 | C4 | C4M | H4M1 | 22.3° | 179.4° |
C5 | C4 | C4M | H4M2 | 142.3° | 58.9° |
C5 | C4 | C4M | H4M3 | 97.7° | 60.1° |
C5 | C4 | C3A | C3 | 179.7° | 179.9° |
H5 | C5 | C4 | C4M | 6.6° | 0.1° |
H5 | C5 | C4 | C3A | 173.2° | 180.0° |
C4 | C4M | H4M1 | H4M2 | 120.0° | 121.9° |
C4 | C4M | H4M1 | H4M3 | 120.0° | 121.9° |
C4 | C4M | H4M2 | H4M3 | 120.0° | 121.4° |
C4M | C4 | C3A | C3 | 0.6° | 0.0° |
C3A | C4 | C4M | H4M1 | 157.9° | 0.5° |
C3A | C4 | C4M | H4M2 | 37.9° | 121.0° |
C3A | C4 | C4M | H4M3 | 82.1° | 119.9° |
C4 | C3A | C3 | C2 | 179.7° | 180.0° |
C4 | C3A | C3 | H3 | 0.2° | 0.1° |
H4M1 | C4M | H4M2 | H4M3 | 120.0° | 117.2° |
C3A | C3 | C2 | H3 | 180.0° | 179.9° |
C3A | C3 | C2 | H2 | 179.9° | 179.9° |
H3 | C3 | C2 | H2 | 0.1° | 0.1° |