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4E9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5'C5'sing1.43Å1.42Å
O5'Psing1.61Å1.61Å
C5'C4'sing1.53Å1.54Å
C4'O4'sing1.44Å1.43Å
C4'C3'sing1.55Å1.54Å
O4'C1'sing1.44Å1.41Å
C1'N9sing1.46Å1.50Å
C1'C2'sing1.54Å1.53Å
N9C4sing1.37Å1.38ÅAromatic
N9C8sing1.37Å1.38ÅAromatic
C4N3sing1.34Å1.36Å
C4C5doub1.40Å1.38ÅAromatic
N3C2doub1.31Å1.32Å
C2N1sing1.36Å1.35Å
C2N24sing1.37Å1.30Å
N1C6sing1.35Å1.38Å
C6C5sing1.41Å1.44Å
C6O6doub1.22Å1.23Å
C5N7sing1.36Å1.39ÅAromatic
N7C8doub1.31Å1.30ÅAromatic
C8N8sing1.38Å1.38Å
C2'C3'sing1.55Å1.52Å
C3'O3'sing1.43Å1.43Å
POP1sing1.61Å1.48Å
POP2sing1.61Å1.48Å
N8C10sing1.39Å1.36Å
C10C11doub1.41Å1.44ÅAromatic
C10C25sing1.39Å1.40ÅAromatic
C11C12sing1.40Å1.41ÅAromatic
C11C26sing1.41Å1.44ÅAromatic
C12C13doub1.38Å1.40ÅAromatic
C13C14sing1.39Å1.40ÅAromatic
C14C15doub1.39Å1.40ÅAromatic
C15C16sing1.47Å1.36Å
C15C26sing1.41Å1.43ÅAromatic
C16O27doub1.22Å1.24Å
C16C17sing1.47Å1.36Å
C17C18doub1.40Å1.41ÅAromatic
C17C22sing1.41Å1.44ÅAromatic
C18C19sing1.38Å1.40ÅAromatic
C19C20doub1.39Å1.40ÅAromatic
C20C21sing1.38Å1.40ÅAromatic
C21C22doub1.40Å1.41ÅAromatic
C22C23sing1.47Å1.45Å
C23C24sing1.39Å1.41ÅAromatic
C23C26doub1.41Å1.44ÅAromatic
C24C25doub1.38Å1.41ÅAromatic
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
N1H1sing0.97Å1.00Å
C2'H2'sing1.09Å1.10Å
C2'H2''sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'H2sing0.97Å0.95Å
OP1H3sing0.97Å0.95Å
OP2H4sing0.97Å0.95Å
N24H21sing0.97Å1.00Å
N24H22sing0.97Å1.00Å
N8H10sing0.97Å1.00Å
C12H12sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C18H18sing1.08Å1.08Å
C19H19sing1.08Å1.08Å
C20H20sing1.08Å1.08Å
C21H23sing1.08Å1.08Å
C24H24sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
POP3doub1.48Å28.81Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'O5'P122.0°123.0°
O5'C5'C4'112.3°109.5°
O5'C5'H5'108.7°109.4°
O5'C5'H5''108.7°109.5°
O5'POP1109.1°109.5°
O5'POP2108.2°109.5°
O5'POP325.4°109.5°
C5'C4'O4'109.8°110.6°
C5'C4'C3'113.2°110.6°
C4'C5'H5'108.8°109.5°
C4'C5'H5''108.8°109.5°
C5'C4'H4'108.1°110.5°
O4'C4'C3'107.9°103.5°
C4'O4'C1'108.6°107.0°
O4'C4'H4'109.7°110.6°
C4'C3'C2'101.7°102.1°
C4'C3'O3'114.5°110.9°
C3'C4'H4'108.2°110.8°
C4'C3'H3'110.1°110.9°
O4'C1'N9109.4°109.9°
O4'C1'C2'103.7°107.2°
O4'C1'H1'109.0°109.9°
N9C1'C2'119.1°109.9°
C1'N9C4129.2°126.3°
C1'N9C8127.0°126.2°
N9C1'H1'107.8°109.9°
C1'C2'C3'102.0°104.2°
C2'C1'H1'107.4°110.0°
C1'C2'H2'111.3°110.5°
C1'C2'H2''111.3°110.4°
C4N9C8103.7°107.5°
N9C4N3127.3°134.0°
N9C4C5106.9°106.2°
N9C8N7115.6°109.5°
N9C8N8121.5°125.2°
N3C4C5125.6°119.7°
C4N3C2114.1°121.1°
C4C5C6118.4°118.6°
C4C5N7110.2°107.4°
N3C2N1124.5°121.8°
N3C2N24118.0°119.1°
N1C2N24117.2°119.1°
C2N1C6123.6°120.4°
C2N1H1118.2°119.8°
C2N24H21120.0°120.0°
C2N24H22120.0°120.0°
N1C6C5113.5°118.4°
N1C6O6117.2°120.8°
C6N1H1118.2°119.9°
C5C6O6129.2°120.8°
C6C5N7131.3°134.0°
C5N7C8103.4°109.3°
N7C8N8122.8°125.2°
C8N8C10127.3°120.0°
C8N8H10116.4°120.0°
C2'C3'O3'108.1°110.8°
C3'C2'H2'111.3°110.6°
C3'C2'H2''111.3°110.5°
C2'C3'H3'110.3°110.9°
O3'C3'H3'111.7°110.8°
C3'O3'H2109.5°114.1°
OP1POP2119.3°109.5°
POP1H3109.5°114.0°
OP1POP3134.5°109.5°
POP2H4109.5°113.9°
OP2POP390.1°109.5°
N8C10C11121.1°120.1°
N8C10C25121.0°120.1°
C10N8H10116.3°120.0°
C11C10C25117.9°119.8°
C10C11C12121.4°121.0°
C10C11C26119.8°119.4°
C10C25C24122.3°120.9°
C10C25H25118.9°119.6°
C12C11C26118.8°119.6°
C11C12C13120.8°120.2°
C11C12H12119.6°119.9°
C11C26C15119.9°119.3°
C11C26C23120.8°119.6°
C12C13C14120.5°120.9°
C13C12H12119.6°119.9°
C12C13H13119.7°119.6°
C13C14C15121.2°120.4°
C14C13H13119.7°119.5°
C13C14H14119.4°119.8°
C14C15C16120.2°120.5°
C14C15C26118.7°119.6°
C15C14H14119.4°119.8°
C16C15C26121.1°119.9°
C15C16O27118.8°120.5°
C15C16C17121.9°119.0°
C15C26C23119.2°121.1°
O27C16C17119.2°120.5°
C16C17C18119.5°120.5°
C16C17C22120.9°119.7°
C18C17C22119.6°119.7°
C17C18C19121.4°119.8°
C17C18H18119.3°120.1°
C17C22C21117.7°119.5°
C17C22C23118.7°120.0°
C18C19C20119.5°120.5°
C19C18H18119.3°120.1°
C18C19H19120.3°119.7°
C19C20C21120.4°120.6°
C20C19H19120.2°119.7°
C19C20H20119.8°119.7°
C20C21C22121.5°119.9°
C21C20H20119.8°119.7°
C20C21H23119.3°120.1°
C21C22C23123.7°120.5°
C22C21H23119.2°120.0°
C22C23C24124.4°120.2°
C22C23C26118.2°120.3°
C24C23C26117.4°119.6°
C23C24C25121.8°120.7°
C23C24H24119.1°119.6°
C25C24H24119.1°119.7°
C24C25H25118.9°119.5°
H5'C5'H5''109.5°109.4°
H2'C2'H2''109.5°110.6°
H21N24H22120.1°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5'C5'C4'H5'120.4°120.0°
O5'C5'C4'H5''120.4°120.1°
O5'C5'C4'O4'66.2°66.4°
O5'C5'C4'C3'54.3°179.5°
C5'O5'POP134.4°175.0°
C5'O5'POP2165.6°65.0°
O5'C5'H5'H5''118.7°120.0°
O5'C5'C4'H4'174.2°56.5°
C5'O5'POP3147.8°55.1°
PO5'C5'C4'166.5°180.0°
O5'POP1OP2125.0°120.0°
O5'POP1OP31.3°120.0°
O5'POP2OP318.2°120.0°
PO5'C5'H5'73.0°60.0°
PO5'C5'H5''46.1°59.9°
O5'POP1H3180.0°180.0°
O5'POP2H4180.0°60.0°
C5'C4'O4'C3'123.7°118.5°
C5'C4'O4'H4'118.7°122.8°
C5'C4'C3'H4'119.8°122.9°
C5'C4'O4'C1'137.4°158.6°
C5'C4'C3'C2'109.4°155.6°
C5'C4'C3'O3'134.4°86.3°
C4'C5'H5'H5''118.7°120.0°
C5'C4'C3'H3'7.6°37.3°
O4'C4'C3'H4'118.6°118.6°
C4'O4'C1'N9162.0°145.9°
C4'O4'C1'C2'33.9°26.5°
O4'C4'C3'C2'12.3°37.1°
O4'C4'C3'O3'104.0°155.2°
O4'C4'C5'H5'173.3°53.5°
O4'C4'C5'H5''54.2°173.5°
C4'O4'C1'H1'80.3°93.0°
O4'C4'C3'H3'129.2°81.2°
C3'C4'O4'C1'13.7°40.1°
C4'C3'C2'C1'31.0°20.9°
C4'C3'C2'O3'120.8°118.2°
C4'C3'C2'H3'116.8°118.2°
C4'C3'O3'H3'126.0°123.7°
C3'C4'C5'H5'66.1°60.5°
C3'C4'C5'H5''174.7°59.4°
C4'C3'C2'H2'149.8°97.8°
C4'C3'C2'H2''87.7°139.5°
C4'C3'O3'H2180.0°180.0°
O4'C1'N9C2'118.9°117.8°
O4'C1'N9H1'118.5°121.0°
O4'C1'C2'H1'115.4°119.5°
O4'C1'N9C492.2°136.5°
O4'C1'N9C882.5°43.2°
O4'C1'C2'C3'40.6°2.0°
C1'O4'C4'H4'103.9°78.6°
O4'C1'C2'H2'159.4°120.8°
O4'C1'C2'H2''78.2°116.6°
N9C1'C2'H1'122.8°121.1°
C1'N9C4C8175.6°179.7°
C1'N9C4N32.4°0.0°
C1'N9C4C5178.2°180.0°
C1'N9C8N7179.0°179.8°
C1'N9C8N84.4°0.0°
N9C1'C2'C3'162.4°121.4°
N9C1'C2'H2'78.8°119.8°
N9C1'C2'H2''43.6°2.8°
C2'C1'N9C426.8°105.8°
C2'C1'N9C8158.6°74.6°
C1'C2'C3'H2'118.8°118.7°
C1'C2'C3'H2''118.8°118.6°
C1'C2'C3'O3'89.8°139.1°
C1'C2'H2'H2''123.5°122.5°
C1'C2'C3'H3'147.8°97.3°
N9C4N3C5175.1°180.0°
N9C4N3C2171.4°180.0°
N9C4C5C6175.5°179.9°
N9C4C5N70.4°0.0°
C4N9C8N75.2°0.4°
C4N9C8N8171.3°179.7°
C4N9C1'H1'149.4°15.4°
C8N9C4N3173.2°179.7°
C8N9C4C52.6°0.3°
N9C8N7C55.4°0.4°
N9C8N7N8176.5°179.9°
N9C8N8C10176.2°174.1°
C8N9C1'H1'36.0°164.2°
N9C8N8H103.8°5.9°
C4N3C2N14.0°0.0°
C4N3C2N24170.2°180.0°
N3C4C5C60.4°0.1°
N3C4C5N7176.3°180.0°
C5C4N3C23.7°0.0°
C4C5C6N12.8°0.1°
C4C5C6N7174.9°179.9°
C4C5C6O6178.8°179.9°
C4C5N7C83.3°0.3°
N3C2N1N24174.2°180.0°
N3C2N1C60.8°0.0°
N3C2N1H1179.2°180.0°
N3C2N24H210.0°0.0°
N3C2N24H22180.0°180.0°
C2N1C6H1180.0°180.0°
C2N1C6C52.7°0.1°
C2N1C6O6178.7°179.9°
N1C2N24H21174.6°179.9°
N1C2N24H225.4°0.0°
N24C2N1C6173.4°180.0°
N24C2N1H16.6°0.0°
C2N24H21H22180.0°179.9°
N1C6C5O6178.4°180.0°
N1C6C5N7172.1°180.0°
C6C5N7C8171.9°179.8°
C5C6N1H1177.3°179.9°
O6C6C5N76.3°0.0°
O6C6N1H11.4°0.1°
C5N7C8N8171.1°179.7°
N7C8N8C100.1°6.1°
N7C8N8H10179.9°173.9°
C8N8C10H10180.0°180.0°
C8N8C10C11139.8°164.7°
C8N8C10C2541.0°15.0°
C2'C3'O3'H3'121.5°123.6°
C2'C3'C4'H4'130.8°81.5°
C3'C2'C1'H1'74.8°117.5°
C3'C2'H2'H2''123.5°122.7°
C2'C3'O3'H267.5°67.3°
O3'C3'C4'H4'14.6°36.6°
O3'C3'C2'H2'29.0°20.4°
O3'C3'C2'H2''151.4°102.3°
OP1POP2OP3143.6°120.0°
OP1POP2H454.6°60.0°
OP2POP1H355.0°60.0°
N8C10C11C25179.3°179.7°
N8C10C11C120.9°0.0°
N8C10C11C26179.1°180.0°
N8C10C25C24179.2°179.8°
N8C10C25H250.8°0.0°
C10C11C12C26180.0°179.9°
C10C11C12C13179.8°180.0°
C10C11C26C15179.9°180.0°
C10C11C26C230.2°0.1°
C11C10C25C240.0°0.5°
C11C10N8H1040.3°15.3°
C10C11C12H120.1°0.0°
C11C10C25H25180.0°179.7°
C25C10C11C12179.8°179.8°
C25C10C11C260.1°0.3°
C10C25C24C230.1°0.4°
C10C25C24H25180.0°179.8°
C25C10N8H10139.0°165.0°
C10C25C24H24179.9°179.7°
C11C12C13H12180.0°180.0°
C11C12C13C140.0°0.0°
C12C11C26C150.1°0.1°
C12C11C26C23179.8°180.0°
C11C12C13H13180.0°180.0°
C26C11C12C130.2°0.0°
C11C26C15C140.0°0.0°
C11C26C15C16180.0°180.0°
C11C26C15C23179.9°179.9°
C11C26C23C22180.0°180.0°
C11C26C23C240.1°0.0°
C26C11C12H12179.9°179.9°
C12C13C14H13180.0°180.0°
C12C13C14C150.2°0.0°
C12C13C14H14179.8°180.0°
C13C14C15H14180.0°180.0°
C13C14C15C16179.9°180.0°
C13C14C15C260.2°0.0°
C14C13C12H12180.0°179.9°
C14C15C16C26179.9°180.0°
C14C15C16O270.0°0.0°
C14C15C16C17180.0°180.0°
C14C15C26C23180.0°180.0°
C15C14C13H13179.8°180.0°
C15C16O27C17180.0°179.9°
C15C16C17C18179.8°180.0°
C15C16C17C220.0°0.1°
C16C15C26C230.1°0.0°
C16C15C14H140.2°0.0°
C26C15C16O27179.9°180.0°
C26C15C16C170.1°0.0°
C15C26C23C220.0°0.1°
C15C26C23C24179.9°180.0°
C26C15C14H14179.8°180.0°
O27C16C17C180.1°0.1°
O27C16C17C22180.0°180.0°
C16C17C18C22179.9°179.9°
C16C17C18C19180.0°179.9°
C16C17C22C21179.9°179.9°
C16C17C22C230.1°0.1°
C16C17C18H180.0°0.0°
C17C18C19H18180.0°180.0°
C17C18C19C200.2°0.0°
C18C17C22C210.3°0.0°
C18C17C22C23179.9°180.0°
C17C18C19H19179.8°180.0°
C22C17C18C190.1°0.0°
C17C22C21C200.1°0.0°
C17C22C21C23179.8°180.0°
C17C22C23C24179.9°179.9°
C17C22C23C260.0°0.1°
C22C17C18H18179.9°179.9°
C17C22C21H23179.9°180.0°
C18C19C20H19180.0°179.9°
C18C19C20C210.4°0.1°
C18C19C20H20179.6°180.0°
C19C20C21H20180.0°179.9°
C19C20C21C220.2°0.1°
C20C19C18H18179.8°180.0°
C19C20C21H23179.7°179.9°
C20C21C22H23180.0°180.0°
C20C21C22C23179.9°180.0°
C21C20C19H19179.6°180.0°
C21C22C23C240.1°0.0°
C21C22C23C26179.9°179.9°
C22C21C20H20179.8°180.0°
C22C23C24C26179.9°180.0°
C22C23C24C25179.9°179.8°
C23C22C21H230.1°0.0°
C22C23C24H240.1°0.0°
C23C24C25H24180.0°179.8°
C23C24C25H25179.9°179.8°
C26C23C24C250.0°0.2°
C26C23C24H24180.0°179.9°
H5'C5'C4'H4'53.7°176.4°
H5''C5'C4'H4'65.4°63.6°
H4'C4'C3'H3'112.2°160.2°
H1'C1'C2'H2'44.0°1.3°
H1'C1'C2'H2''166.5°123.9°
H2'C2'C3'H3'93.5°144.0°
H2''C2'C3'H3'29.0°21.3°
H3'C3'O3'H254.0°56.3°
H3OP1POP3178.7°60.1°
H4OP2POP3161.8°180.0°
H12C12C13H130.1°0.0°
H13C13C14H140.3°0.0°
H18C18C19H190.2°0.1°
H19C19C20H200.4°0.1°
H20C20C21H230.3°0.0°
H24C24C25H250.0°0.1°

222624

PDB entries from 2024-07-17

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