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SummaryGeometryRelated PDB entries

433

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C1AO1Cdoub1.21Å1.24Å
C1AO1Bsing1.34Å1.23Å
C1AC1Dsing1.51Å1.46Å
O1BHOB1sing0.97Å0.95Å
C1DC1Xsing1.53Å1.60Å
C1DC1Ysing1.53Å1.49Å
C1DO1Esing1.43Å1.48Å
C1XH1X1sing1.09Å1.12Å
C1XH1X2sing1.09Å1.11Å
C1XH1X3sing1.09Å1.11Å
C1YH1Y1sing1.09Å1.12Å
C1YH1Y2sing1.09Å1.12Å
C1YH1Y3sing1.09Å1.11Å
O1EC1Fsing1.36Å1.42Å
C1FC1Gdoub1.39Å1.37ÅAromatic
C1FC1Hsing1.39Å1.41ÅAromatic
C1GC1Ising1.38Å1.35ÅAromatic
C1GH1G1sing1.08Å1.10Å
C1IC1Kdoub1.38Å1.36ÅAromatic
C1IH1I1sing1.08Å1.10Å
C1KC1Jsing1.38Å1.38ÅAromatic
C1KC1Lsing1.51Å1.51Å
C1JC1Hdoub1.38Å1.34ÅAromatic
C1JH1J1sing1.08Å1.10Å
C1HH1H1sing1.08Å1.10Å
C1LC1Msing1.53Å1.47Å
C1LH1L1sing1.09Å1.11Å
C1LH1L2sing1.09Å1.12Å
C1MC1Nsing1.53Å1.54Å
C1MH1M1sing1.09Å1.11Å
C1MH1M2sing1.09Å1.12Å
C1NN2Bsing1.47Å1.51Å
C1NH1N1sing1.09Å1.12Å
C1NH1N2sing1.09Å1.11Å
N2BC2Csing1.46Å1.58Å
N2BC2Asing1.35Å1.37Å
C2CC2Dsing1.53Å1.58Å
C2CH2C1sing1.09Å1.11Å
C2CH2C2sing1.09Å1.11Å
C2AO2Adoub1.22Å1.22Å
C2AN3Asing1.35Å1.45Å
N3AC3Bsing1.40Å1.55Å
N3AHN31sing0.97Å1.02Å
C3BC3Cdoub1.39Å1.42ÅAromatic
C3BC3Dsing1.39Å1.43ÅAromatic
C3CC3Esing1.38Å1.42ÅAromatic
C3CH3C1sing1.08Å1.10Å
C3EC3Gdoub1.38Å1.37ÅAromatic
C3EH3E1sing1.08Å1.10Å
C3GC3Fsing1.38Å1.36ÅAromatic
C3GH3G1sing1.08Å1.10Å
C3FCL3Fsing1.74Å1.76Å
C3FC3Ddoub1.38Å1.44ÅAromatic
C3DCL3Dsing1.74Å1.74Å
C2DC2Esing1.51Å1.60Å
C2DH2D1sing1.09Å1.11Å
C2DH2D2sing1.09Å1.12Å
C2EC2Fdoub1.38Å1.39ÅAromatic
C2EC2Gsing1.38Å1.40ÅAromatic
C2FCL2Fsing1.74Å1.77Å
C2FC2Hsing1.38Å1.40ÅAromatic
C2HC2Jdoub1.38Å1.37ÅAromatic
C2HH2H1sing1.08Å1.10Å
C2JC2Ising1.38Å1.37ÅAromatic
C2JH2J1sing1.08Å1.10Å
C2IC2Gdoub1.38Å1.41ÅAromatic
C2IH2I1sing1.08Å1.10Å
C2GF2Gsing1.35Å1.35Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O1CC1AO1B123.1°120.0°
O1CC1AC1D116.3°120.0°
O1BC1AC1D120.6°120.0°
C1AO1BHOB1123.1°120.0°
C1AC1DC1X102.1°109.5°
C1AC1DC1Y115.1°109.4°
C1AC1DO1E107.3°109.4°
C1XC1DC1Y103.3°109.5°
C1XC1DO1E122.1°109.5°
C1DC1XH1X1102.1°109.5°
C1DC1XH1X2115.0°109.5°
C1DC1XH1X3115.0°109.5°
C1YC1DO1E107.3°109.5°
C1DC1YH1Y1115.1°109.6°
C1DC1YH1Y2110.2°109.5°
C1DC1YH1Y3110.2°109.5°
C1DO1EC1F126.7°106.8°
H1X1C1XH1X2115.0°109.5°
H1X1C1XH1X3115.0°109.4°
H1X2C1XH1X395.5°109.5°
H1Y1C1YH1Y2110.1°109.4°
H1Y1C1YH1Y3110.1°109.4°
H1Y2C1YH1Y3100.1°109.4°
O1EC1FC1G113.0°120.1°
O1EC1FC1H130.4°120.1°
C1GC1FC1H116.6°119.9°
C1FC1GC1I121.6°120.0°
C1FC1GH1G1119.8°120.0°
C1FC1HC1J121.7°120.0°
C1FC1HH1H1121.7°120.1°
C1IC1GH1G1118.5°120.1°
C1GC1IC1K120.9°120.1°
C1GC1IH1I1119.2°120.0°
C1KC1IH1I1119.8°120.0°
C1IC1KC1J119.6°120.1°
C1IC1KC1L120.0°119.9°
C1JC1KC1L120.4°120.0°
C1KC1JC1H119.5°120.0°
C1KC1JH1J1121.4°120.0°
C1KC1LC1M132.9°109.5°
C1KC1LH1L1104.1°109.5°
C1KC1LH1L2104.1°109.5°
C1HC1JH1J1119.1°120.0°
C1JC1HH1H1116.6°120.0°
C1MC1LH1L1104.1°109.5°
C1MC1LH1L2104.1°109.5°
C1LC1MC1N115.7°109.4°
C1LC1MH1M1110.0°109.5°
C1LC1MH1M2110.0°109.5°
H1L1C1LH1L2104.8°109.4°
C1NC1MH1M1109.9°109.5°
C1NC1MH1M2109.9°109.4°
C1MC1NN2B125.0°109.4°
C1MC1NH1N1106.7°109.5°
C1MC1NH1N2106.8°109.5°
H1M1C1MH1M2100.3°109.6°
N2BC1NH1N1106.7°109.5°
N2BC1NH1N2106.7°109.5°
C1NN2BC2C122.7°120.0°
C1NN2BC2A119.3°120.0°
H1N1C1NH1N2102.9°109.5°
C2CN2BC2A117.0°120.0°
N2BC2CC2D132.4°109.5°
N2BC2CH2C1104.3°109.5°
N2BC2CH2C2104.2°109.5°
N2BC2AO2A117.0°120.0°
N2BC2AN3A121.6°120.1°
C2DC2CH2C1104.3°109.5°
C2DC2CH2C2104.3°109.5°
C2CC2DC2E124.0°109.5°
C2CC2DH2D1107.0°109.4°
C2CC2DH2D2107.0°109.5°
H2C1C2CH2C2104.7°109.5°
O2AC2AN3A121.2°120.0°
C2AN3AC3B141.9°120.1°
C2AN3AHN31103.5°120.0°
C3BN3AHN31114.7°119.9°
N3AC3BC3C126.8°120.0°
N3AC3BC3D119.4°120.1°
C3CC3BC3D113.8°119.9°
C3BC3CC3E123.8°120.0°
C3BC3CH3C1118.2°120.1°
C3BC3DC3F120.3°119.9°
C3BC3DCL3D115.8°120.0°
C3EC3CH3C1118.0°120.0°
C3CC3EC3G120.9°120.1°
C3CC3EH3E1121.4°120.0°
C3GC3EH3E1117.7°120.0°
C3EC3GC3F117.7°120.2°
C3EC3GH3G1121.5°119.9°
C3FC3GH3G1120.9°119.9°
C3GC3FCL3F108.8°120.0°
C3GC3FC3D123.5°120.0°
CL3FC3FC3D127.7°120.0°
C3FC3DCL3D123.9°120.0°
C2EC2DH2D1107.1°109.5°
C2EC2DH2D2107.1°109.4°
C2DC2EC2F119.1°120.0°
C2DC2EC2G125.4°120.0°
H2D1C2DH2D2102.6°109.5°
C2FC2EC2G115.5°120.0°
C2EC2FCL2F122.3°120.0°
C2EC2FC2H121.3°120.0°
C2EC2GC2I122.7°120.0°
C2EC2GF2G122.2°120.0°
CL2FC2FC2H116.4°120.0°
C2FC2HC2J122.7°120.0°
C2FC2HH2H1119.7°120.0°
C2JC2HH2H1117.6°120.0°
C2HC2JC2I118.0°120.0°
C2HC2JH2J1120.8°120.0°
C2IC2JH2J1121.2°120.0°
C2JC2IC2G119.8°120.0°
C2JC2IH2I1118.7°120.0°
C2GC2IH2I1121.5°120.0°
C2IC2GF2G115.1°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O1CC1AO1BC1D178.6°180.0°
O1CC1AO1BHOB1179.9°0.0°
O1CC1AC1DC1X94.5°120.0°
O1CC1AC1DC1Y154.4°120.0°
O1CC1AC1DO1E35.0°0.0°
O1BC1AC1DC1X84.2°60.0°
O1BC1AC1DC1Y26.9°60.1°
O1BC1AC1DO1E146.3°180.0°
C1DC1AO1BHOB11.5°179.9°
C1AC1DC1XC1Y119.8°120.0°
C1AC1DC1XO1E119.5°120.0°
C1AC1DC1YO1E119.3°119.9°
C1AC1DC1XH1X1180.0°69.5°
C1AC1DC1XH1X254.8°170.5°
C1AC1DC1XH1X354.8°50.5°
C1AC1DC1YH1Y1180.0°66.5°
C1AC1DC1YH1Y254.8°53.5°
C1AC1DC1YH1Y354.7°173.5°
C1AC1DO1EC1F72.7°176.1°
C1XC1DC1YO1E130.3°120.0°
C1DC1XH1X1H1X2125.3°120.0°
C1DC1XH1X1H1X3125.2°120.0°
C1DC1XH1X2H1X3120.9°120.0°
C1XC1DC1YH1Y169.6°173.4°
C1XC1DC1YH1Y2165.1°66.6°
C1XC1DC1YH1Y355.7°53.4°
C1XC1DO1EC1F170.3°56.1°
C1YC1DC1XH1X160.2°170.5°
C1YC1DC1XH1X265.0°50.5°
C1YC1DC1XH1X3174.6°69.6°
C1DC1YH1Y1H1Y2125.3°120.0°
C1DC1YH1Y1H1Y3125.3°120.1°
C1DC1YH1Y2H1Y3116.0°120.0°
C1YC1DO1EC1F51.5°64.0°
O1EC1DC1XH1X160.5°50.5°
O1EC1DC1XH1X2174.3°69.5°
O1EC1DC1XH1X364.7°170.4°
O1EC1DC1YH1Y160.7°53.4°
O1EC1DC1YH1Y264.6°173.4°
O1EC1DC1YH1Y3174.0°66.6°
C1DO1EC1FC1G135.3°91.5°
C1DO1EC1FC1H44.9°88.8°
H1X1C1XH1X2H1X3120.9°119.9°
H1Y1C1YH1Y2H1Y3115.9°119.9°
O1EC1FC1GC1H179.8°179.7°
O1EC1FC1GC1I179.8°180.0°
O1EC1FC1GH1G10.2°0.1°
O1EC1FC1HC1J180.0°179.8°
O1EC1FC1HH1H10.0°0.2°
C1FC1GC1IH1G1180.0°179.9°
C1FC1GC1IC1K0.0°0.0°
C1FC1GC1IH1I1180.0°179.9°
C1GC1FC1HC1J0.3°0.5°
C1GC1FC1HH1H1179.7°179.9°
C1HC1FC1GC1I0.0°0.3°
C1HC1FC1GH1G1180.0°179.8°
C1FC1HC1JC1K0.4°0.4°
C1FC1HC1JH1H1180.0°179.6°
C1FC1HC1JH1J1179.6°179.7°
C1GC1IC1KH1I1180.0°179.9°
C1GC1IC1KC1J0.1°0.1°
C1GC1IC1KC1L179.8°180.0°
H1G1C1GC1IC1K179.9°179.9°
H1G1C1GC1IH1I10.0°0.0°
C1IC1KC1JC1L179.9°179.9°
C1IC1KC1JC1H0.3°0.1°
C1IC1KC1JH1J1179.7°180.0°
C1IC1KC1LC1M61.3°90.0°
C1IC1KC1LH1L163.9°150.0°
C1IC1KC1LH1L2173.5°30.1°
H1I1C1IC1KC1J179.8°180.0°
H1I1C1IC1KC1L0.3°0.1°
C1KC1JC1HH1J1180.0°179.8°
C1KC1JC1HH1H1179.6°180.0°
C1JC1KC1LC1M118.8°89.9°
C1JC1KC1LH1L1115.9°30.1°
C1JC1KC1LH1L26.4°150.0°
C1LC1KC1JC1H179.6°179.8°
C1LC1KC1JH1J10.4°0.1°
C1KC1LC1MH1L1125.2°120.0°
C1KC1LC1MH1L2125.2°120.0°
C1KC1LH1L1H1L2109.1°120.0°
C1KC1LC1MC1N29.7°180.0°
C1KC1LC1MH1M195.6°60.0°
C1KC1LC1MH1M2154.9°60.1°
H1J1C1JC1HH1H10.4°0.1°
C1MC1LH1L1H1L2109.0°120.0°
C1LC1MC1NH1M1125.3°120.0°
C1LC1MC1NH1M2125.3°119.9°
C1LC1MH1M1H1M2115.8°120.0°
C1LC1MC1NN2B121.8°180.0°
C1LC1MC1NH1N13.5°60.0°
C1LC1MC1NH1N2113.0°60.0°
H1L1C1LC1MC1N154.9°60.0°
H1L1C1LC1MH1M129.7°180.0°
H1L1C1LC1MH1M279.9°59.9°
H1L2C1LC1MC1N95.5°60.0°
H1L2C1LC1MH1M1139.2°60.0°
H1L2C1LC1MH1M229.7°179.9°
C1NC1MH1M1H1M2115.7°120.0°
C1MC1NN2BH1N1125.3°120.0°
C1MC1NN2BH1N2125.3°120.0°
C1MC1NH1N1H1N2112.2°120.0°
C1MC1NN2BC2C46.3°90.0°
C1MC1NN2BC2A122.0°90.0°
H1M1C1MC1NN2B113.0°60.0°
H1M1C1MC1NH1N1121.8°180.0°
H1M1C1MC1NH1N212.3°60.0°
H1M2C1MC1NN2B3.5°60.1°
H1M2C1MC1NH1N1128.8°59.9°
H1M2C1MC1NH1N2121.7°179.9°
N2BC1NH1N1H1N2112.1°120.0°
C1NN2BC2CC2A168.6°179.9°
C1NN2BC2CC2D76.1°90.0°
C1NN2BC2CH2C1158.6°150.0°
C1NN2BC2CH2C249.1°30.0°
C1NN2BC2AO2A177.9°180.0°
C1NN2BC2AN3A6.2°0.0°
H1N1C1NN2BC2C79.0°29.9°
H1N1C1NN2BC2A112.7°150.0°
H1N2C1NN2BC2C171.6°150.0°
H1N2C1NN2BC2A3.3°30.0°
N2BC2CC2DH2C1125.2°120.0°
N2BC2CC2DH2C2125.2°120.0°
N2BC2CH2C1H2C2109.2°120.0°
C2CN2BC2AO2A8.9°0.0°
C2CN2BC2AN3A175.2°180.0°
N2BC2CC2DC2E179.3°180.0°
N2BC2CC2DH2D155.4°60.0°
N2BC2CC2DH2D254.0°60.0°
C2AN2BC2CC2D115.3°90.0°
C2AN2BC2CH2C19.9°30.0°
C2AN2BC2CH2C2119.4°150.0°
N2BC2AO2AN3A175.9°180.0°
N2BC2AN3AC3B170.3°173.8°
N2BC2AN3AHN319.8°6.2°
C2DC2CH2C1H2C2109.3°120.0°
C2CC2DC2EH2D1125.2°120.0°
C2CC2DC2EH2D2125.3°120.0°
C2CC2DH2D1H2D2112.5°120.0°
C2CC2DC2EC2F86.9°90.3°
C2CC2DC2EC2G92.1°90.0°
H2C1C2CC2DC2E54.1°60.0°
H2C1C2CC2DH2D1179.3°180.0°
H2C1C2CC2DH2D271.2°60.0°
H2C2C2CC2DC2E55.5°60.0°
H2C2C2CC2DH2D169.8°60.0°
H2C2C2CC2DH2D2179.2°180.0°
O2AC2AN3AC3B14.0°6.2°
O2AC2AN3AHN31165.9°173.8°
C2AN3AC3BHN31179.9°180.0°
C2AN3AC3BC3C44.9°24.5°
C2AN3AC3BC3D134.3°155.3°
N3AC3BC3CC3D179.2°179.8°
N3AC3BC3CC3E179.6°180.0°
N3AC3BC3CH3C10.4°0.0°
N3AC3BC3DC3F179.3°179.8°
N3AC3BC3DCL3D0.1°0.1°
HN31N3AC3BC3C135.1°155.5°
HN31N3AC3BC3D45.8°24.7°
C3BC3CC3EH3C1179.9°180.0°
C3BC3CC3EC3G0.1°0.1°
C3BC3CC3EH3E1179.8°180.0°
C3CC3BC3DC3F1.4°0.4°
C3CC3BC3DCL3D179.3°180.0°
C3DC3BC3CC3E1.2°0.1°
C3DC3BC3CH3C1178.9°179.8°
C3BC3DC3FC3G0.8°0.4°
C3BC3DC3FCL3F178.9°179.8°
C3BC3DC3FCL3D179.1°179.6°
C3CC3EC3GH3E1179.9°179.9°
C3CC3EC3GC3F0.7°0.1°
C3CC3EC3GH3G1179.3°179.9°
H3C1C3CC3EC3G179.9°180.0°
H3C1C3CC3EH3E10.2°0.1°
C3EC3GC3FH3G1180.0°180.0°
C3EC3GC3FCL3F179.9°180.0°
C3EC3GC3FC3D0.4°0.2°
H3E1C3EC3GC3F179.4°180.0°
H3E1C3EC3GH3G10.7°0.0°
C3GC3FCL3FC3D179.7°179.8°
C3GC3FC3DCL3D179.9°179.9°
H3G1C3GC3FCL3F0.1°0.0°
H3G1C3GC3FC3D179.6°179.8°
CL3FC3FC3DCL3D0.3°0.1°
C2EC2DH2D1H2D2112.6°120.0°
C2DC2EC2FC2G179.1°179.7°
C2DC2EC2FCL2F0.3°0.3°
C2DC2EC2FC2H180.0°179.8°
C2DC2EC2GC2I179.9°180.0°
C2DC2EC2GF2G0.5°0.0°
H2D1C2DC2EC2F38.3°149.8°
H2D1C2DC2EC2G142.7°30.0°
H2D2C2DC2EC2F147.8°29.7°
H2D2C2DC2EC2G33.2°150.0°
C2EC2FCL2FC2H179.6°179.5°
C2EC2FC2HC2J0.0°0.5°
C2EC2FC2HH2H1180.0°179.7°
C2FC2EC2GC2I1.0°0.2°
C2FC2EC2GF2G179.6°179.7°
C2GC2EC2FCL2F178.8°180.0°
C2GC2EC2FC2H0.8°0.5°
C2EC2GC2IC2J0.4°0.0°
C2EC2GC2IF2G179.4°180.0°
C2EC2GC2IH2I1179.7°180.0°
CL2FC2FC2HC2J179.6°180.0°
CL2FC2FC2HH2H10.4°0.2°
C2FC2HC2JH2H1180.0°179.7°
C2FC2HC2JC2I0.7°0.2°
C2FC2HC2JH2J1179.4°179.7°
C2HC2JC2IH2J1179.9°180.0°
C2HC2JC2IC2G0.5°0.0°
C2HC2JC2IH2I1179.5°180.0°
H2H1C2HC2JC2I179.3°180.0°
H2H1C2HC2JH2J10.6°0.0°
C2JC2IC2GH2I1179.9°179.9°
C2JC2IC2GF2G179.8°180.0°
H2J1C2JC2IC2G179.6°180.0°
H2J1C2JC2IH2I10.5°0.1°
H2I1C2IC2GF2G0.3°0.1°

224931

PDB entries from 2024-09-11

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