42Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O | doub | 1.21Å | 1.26Å | |
| C | CA | sing | 1.51Å | 1.49Å | |
| N | CA | sing | 1.47Å | 1.49Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CB | OG | sing | 1.45Å | 1.41Å | |
| OAC | C1A | doub | 1.21Å | 1.23Å | |
| OG | C1A | sing | 1.34Å | 1.45Å | |
| C1A | C2A | sing | 1.51Å | 1.52Å | |
| C2A | C1 | sing | 1.53Å | 1.51Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | H5 | sing | 1.09Å | 1.10Å | |
| CB | H6 | sing | 1.09Å | 1.10Å | |
| C2A | H7 | sing | 1.09Å | 1.10Å | |
| C2A | H8 | sing | 1.09Å | 1.10Å | |
| C1 | H9 | sing | 1.09Å | 1.10Å | |
| C1 | H10 | sing | 1.09Å | 1.10Å | |
| C1 | H11 | sing | 1.09Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 118.1° | 120.0° |
| O | C | OXT | 123.5° | 120.0° |
| C | CA | N | 114.3° | 109.5° |
| C | CA | CB | 106.3° | 109.5° |
| CA | C | OXT | 118.4° | 120.0° |
| C | CA | HA | 107.7° | 109.4° |
| N | CA | CB | 113.1° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | HA | 107.8° | 109.5° |
| CA | CB | OG | 107.7° | 109.4° |
| CB | CA | HA | 107.4° | 109.4° |
| CA | CB | H5 | 109.9° | 109.4° |
| CA | CB | H6 | 109.9° | 109.4° |
| CB | OG | C1A | 119.5° | 117.0° |
| OG | CB | H5 | 109.9° | 109.5° |
| OG | CB | H6 | 109.9° | 109.5° |
| OAC | C1A | OG | 118.7° | 120.0° |
| OAC | C1A | C2A | 122.1° | 120.0° |
| OG | C1A | C2A | 119.2° | 120.0° |
| C1A | C2A | C1 | 109.2° | 109.5° |
| C1A | C2A | H7 | 109.5° | 109.5° |
| C1A | C2A | H8 | 109.5° | 109.5° |
| C1 | C2A | H7 | 109.5° | 109.5° |
| C1 | C2A | H8 | 109.5° | 109.5° |
| C2A | C1 | H9 | 109.5° | 109.4° |
| C2A | C1 | H10 | 109.5° | 109.5° |
| C2A | C1 | H11 | 109.5° | 109.5° |
| C | OXT | HXT | 109.5° | 117.0° |
| H | N | H2 | 109.5° | 111.0° |
| H5 | CB | H6 | 109.5° | 109.5° |
| H7 | C2A | H8 | 109.5° | 109.4° |
| H9 | C1 | H10 | 109.4° | 109.5° |
| H9 | C1 | H11 | 109.5° | 109.5° |
| H10 | C1 | H11 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | OXT | 179.8° | 179.9° |
| O | C | CA | N | 175.8° | 20.1° |
| O | C | CA | CB | 58.7° | 100.0° |
| O | C | CA | HA | 56.1° | 140.1° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| C | CA | N | CB | 121.8° | 120.0° |
| C | CA | N | HA | 119.6° | 120.0° |
| C | CA | CB | HA | 115.0° | 119.9° |
| C | CA | CB | OG | 174.0° | 175.0° |
| C | CA | N | H | 180.0° | 60.0° |
| C | CA | N | H2 | 60.0° | 176.1° |
| C | CA | CB | H5 | 66.3° | 65.1° |
| C | CA | CB | H6 | 54.3° | 55.0° |
| CA | C | OXT | HXT | 179.7° | 180.0° |
| N | CA | CB | HA | 118.8° | 120.0° |
| N | CA | CB | OG | 59.8° | 65.0° |
| N | CA | C | OXT | 4.4° | 160.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | H5 | 59.9° | 55.0° |
| N | CA | CB | H6 | 179.5° | 175.1° |
| CA | CB | OG | H5 | 119.7° | 119.9° |
| CA | CB | OG | H6 | 119.7° | 120.0° |
| CA | CB | OG | C1A | 96.6° | 180.0° |
| CB | CA | C | OXT | 121.1° | 79.9° |
| CB | CA | N | H | 58.2° | 60.0° |
| CB | CA | N | H2 | 178.2° | 63.9° |
| CA | CB | H5 | H6 | 120.8° | 120.0° |
| CB | OG | C1A | OAC | 5.7° | 0.0° |
| CB | OG | C1A | C2A | 175.0° | 180.0° |
| OG | CB | CA | HA | 59.0° | 55.0° |
| OG | CB | H5 | H6 | 120.8° | 120.1° |
| OAC | C1A | OG | C2A | 179.3° | 180.0° |
| OAC | C1A | C2A | C1 | 15.4° | 0.0° |
| OAC | C1A | C2A | H7 | 135.4° | 120.0° |
| OAC | C1A | C2A | H8 | 104.5° | 120.0° |
| OG | C1A | C2A | C1 | 165.3° | 180.0° |
| C1A | OG | CB | H5 | 23.2° | 60.0° |
| C1A | OG | CB | H6 | 143.7° | 60.1° |
| OG | C1A | C2A | H7 | 45.3° | 60.0° |
| OG | C1A | C2A | H8 | 74.7° | 60.0° |
| C1A | C2A | C1 | H7 | 120.0° | 120.0° |
| C1A | C2A | C1 | H8 | 120.0° | 120.0° |
| C1A | C2A | H7 | H8 | 120.1° | 120.0° |
| C1A | C2A | C1 | H9 | 180.0° | 60.0° |
| C1A | C2A | C1 | H10 | 60.0° | 60.0° |
| C1A | C2A | C1 | H11 | 60.0° | 180.0° |
| C1 | C2A | H7 | H8 | 120.1° | 120.0° |
| C2A | C1 | H9 | H10 | 120.0° | 120.0° |
| C2A | C1 | H9 | H11 | 120.0° | 120.0° |
| C2A | C1 | H10 | H11 | 120.0° | 120.0° |
| OXT | C | CA | HA | 124.1° | 40.0° |
| H | N | CA | HA | 60.4° | 180.0° |
| H2 | N | CA | HA | 59.6° | 56.1° |
| HA | CA | CB | H5 | 178.7° | 175.0° |
| HA | CA | CB | H6 | 60.7° | 65.0° |
| H7 | C2A | C1 | H9 | 60.0° | 180.0° |
| H7 | C2A | C1 | H10 | 180.0° | 60.0° |
| H7 | C2A | C1 | H11 | 60.0° | 60.0° |
| H8 | C2A | C1 | H9 | 60.0° | 60.0° |
| H8 | C2A | C1 | H10 | 60.0° | 180.0° |
| H8 | C2A | C1 | H11 | 180.0° | 60.0° |
| H9 | C1 | H10 | H11 | 120.0° | 120.0° |
