3ZO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| OP2 | P | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
| C1' | N9 | sing | 1.46Å | 1.47Å | |
| N9 | C4 | sing | 1.36Å | 1.36Å | Aromatic |
| C5 | C4 | doub | 1.39Å | 1.37Å | Aromatic |
| C5 | C6 | sing | 1.46Å | 1.42Å | |
| C4 | N3 | sing | 1.38Å | 1.35Å | |
| O6 | C6 | doub | 1.22Å | 1.22Å | |
| C6 | N1 | sing | 1.35Å | 1.38Å | |
| N3 | C2 | sing | 1.35Å | 1.33Å | |
| N1 | C2 | sing | 1.34Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H2 | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| OP2 | H4 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.8° | 109.5° |
| OP1 | P | O5' | 108.3° | 109.5° |
| OP1 | P | OP3 | 108.1° | 109.5° |
| OP2 | P | O5' | 108.0° | 109.5° |
| OP2 | P | OP3 | 108.3° | 109.5° |
| P | OP2 | H4 | 109.5° | 114.0° |
| P | O5' | C5' | 121.2° | 123.0° |
| O5' | P | OP3 | 103.0° | 109.5° |
| O5' | C5' | C4' | 111.7° | 109.5° |
| O5' | C5' | H5'' | 108.9° | 109.5° |
| O5' | C5' | H5' | 108.9° | 109.5° |
| C5' | C4' | C3' | 114.3° | 110.4° |
| C5' | C4' | O4' | 109.6° | 110.4° |
| C4' | C5' | H5'' | 108.9° | 109.5° |
| C4' | C5' | H5' | 108.9° | 109.4° |
| C5' | C4' | H4' | 108.3° | 110.3° |
| C3' | C4' | O4' | 106.9° | 104.8° |
| C4' | C3' | C2' | 103.6° | 104.0° |
| C4' | C3' | O3' | 109.6° | 110.5° |
| C3' | C4' | H4' | 108.2° | 110.4° |
| C4' | C3' | H3' | 110.7° | 110.6° |
| C4' | O4' | C1' | 107.5° | 105.3° |
| O4' | C4' | H4' | 109.5° | 110.5° |
| C2' | C3' | O3' | 109.4° | 110.5° |
| C3' | C2' | C1' | 100.2° | 104.1° |
| C2' | C3' | H3' | 110.9° | 110.5° |
| C3' | C2' | H2' | 111.7° | 110.5° |
| C3' | C2' | H2'' | 111.7° | 110.5° |
| O3' | C3' | H3' | 112.3° | 110.6° |
| C3' | O3' | H2 | 109.5° | 114.0° |
| O4' | C1' | C2' | 105.9° | 104.8° |
| O4' | C1' | N9 | 108.2° | 110.4° |
| O4' | C1' | H1' | 109.9° | 110.4° |
| N7 | C8 | N9 | 113.9° | 109.6° |
| C8 | N7 | C5 | 103.7° | 109.1° |
| N7 | C8 | H8 | 123.0° | 125.2° |
| C8 | N9 | C1' | 129.3° | 126.2° |
| C8 | N9 | C4 | 105.5° | 107.6° |
| N9 | C8 | H8 | 123.0° | 125.2° |
| C2' | C1' | N9 | 114.8° | 110.3° |
| C1' | C2' | H2' | 111.7° | 110.5° |
| C1' | C2' | H2'' | 111.7° | 110.5° |
| C2' | C1' | H1' | 108.7° | 110.4° |
| N7 | C5 | C4 | 110.4° | 107.4° |
| N7 | C5 | C6 | 130.1° | 134.3° |
| C1' | N9 | C4 | 125.2° | 126.2° |
| N9 | C1' | H1' | 109.3° | 110.5° |
| N9 | C4 | C5 | 106.5° | 106.4° |
| N9 | C4 | N3 | 125.4° | 134.4° |
| C4 | C5 | C6 | 119.5° | 118.3° |
| C5 | C4 | N3 | 128.1° | 119.2° |
| C5 | C6 | O6 | 128.8° | 120.7° |
| C5 | C6 | N1 | 111.3° | 118.5° |
| C4 | N3 | C2 | 111.9° | 120.8° |
| C4 | N3 | H3 | 124.0° | 119.6° |
| O6 | C6 | N1 | 119.9° | 120.8° |
| C6 | N1 | C2 | 125.2° | 121.0° |
| C6 | N1 | H1 | 117.4° | 119.5° |
| N3 | C2 | N1 | 123.9° | 122.3° |
| N3 | C2 | O2 | 120.0° | 118.9° |
| C2 | N3 | H3 | 124.1° | 119.6° |
| N1 | C2 | O2 | 116.1° | 118.9° |
| C2 | N1 | H1 | 117.4° | 119.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| H5'' | C5' | H5' | 109.5° | 109.5° |
| H2' | C2' | H2'' | 109.5° | 110.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 124.5° | 120.0° |
| OP1 | P | OP2 | OP3 | 124.5° | 120.0° |
| OP1 | P | O5' | OP3 | 114.4° | 120.0° |
| OP1 | P | O5' | C5' | 37.5° | 55.0° |
| OP1 | P | OP2 | H4 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP2 | P | O5' | OP3 | 114.5° | 120.0° |
| OP2 | P | O5' | C5' | 168.6° | 65.0° |
| OP2 | P | OP3 | HOP3 | 131.2° | 60.1° |
| P | O5' | C5' | C4' | 169.5° | 180.0° |
| P | O5' | C5' | H5'' | 70.1° | 60.0° |
| P | O5' | C5' | H5' | 49.2° | 60.0° |
| O5' | P | OP2 | H4 | 124.5° | 60.0° |
| O5' | P | OP3 | HOP3 | 114.5° | 180.0° |
| O5' | C5' | C4' | H5'' | 120.3° | 120.0° |
| O5' | C5' | C4' | H5' | 120.3° | 120.0° |
| O5' | C5' | C4' | C3' | 59.0° | 175.0° |
| O5' | C5' | C4' | O4' | 61.0° | 69.7° |
| C5' | O5' | P | OP3 | 76.9° | 175.0° |
| O5' | C5' | H5'' | H5' | 119.0° | 120.0° |
| O5' | C5' | C4' | H4' | 179.6° | 52.7° |
| C5' | C4' | C3' | O4' | 121.5° | 118.8° |
| C5' | C4' | C3' | H4' | 120.7° | 122.3° |
| C5' | C4' | O4' | H4' | 118.7° | 122.3° |
| C5' | C4' | C3' | C2' | 106.5° | 142.8° |
| C5' | C4' | C3' | O3' | 136.8° | 98.6° |
| C5' | C4' | O4' | C1' | 134.7° | 159.4° |
| C4' | C5' | H5'' | H5' | 118.9° | 119.9° |
| C5' | C4' | C3' | H3' | 12.5° | 24.2° |
| C3' | C4' | O4' | H4' | 117.0° | 118.9° |
| C4' | C3' | C2' | O3' | 116.8° | 118.6° |
| C4' | C3' | C2' | H3' | 118.8° | 118.7° |
| C4' | C3' | O3' | H3' | 123.5° | 122.8° |
| C3' | C4' | O4' | C1' | 10.4° | 40.6° |
| C4' | C3' | C2' | C1' | 32.3° | 0.0° |
| C3' | C4' | C5' | H5'' | 61.3° | 65.0° |
| C3' | C4' | C5' | H5' | 179.4° | 55.0° |
| C4' | C3' | O3' | H2 | 180.0° | 180.0° |
| C4' | C3' | C2' | H2' | 86.2° | 118.7° |
| C4' | C3' | C2' | H2'' | 150.8° | 118.6° |
| O4' | C4' | C3' | C2' | 14.9° | 24.0° |
| O4' | C4' | C3' | O3' | 101.7° | 142.6° |
| C4' | O4' | C1' | C2' | 32.2° | 40.6° |
| C4' | O4' | C1' | N9 | 155.8° | 159.3° |
| O4' | C4' | C5' | H5'' | 178.7° | 50.4° |
| O4' | C4' | C5' | H5' | 59.4° | 170.3° |
| O4' | C4' | C3' | H3' | 133.9° | 94.6° |
| C4' | O4' | C1' | H1' | 85.0° | 78.3° |
| C2' | C3' | O3' | H3' | 123.6° | 122.6° |
| C3' | C2' | C1' | O4' | 40.2° | 24.0° |
| C3' | C2' | C1' | H2' | 118.5° | 118.6° |
| C3' | C2' | C1' | H2'' | 118.5° | 118.6° |
| C3' | C2' | C1' | N9 | 159.5° | 142.8° |
| C2' | C3' | C4' | H4' | 132.8° | 94.9° |
| C2' | C3' | O3' | H2 | 67.0° | 65.4° |
| C3' | C2' | H2' | H2'' | 124.3° | 122.7° |
| C3' | C2' | C1' | H1' | 77.9° | 94.8° |
| O3' | C3' | C2' | C1' | 84.5° | 118.6° |
| O3' | C3' | C4' | H4' | 16.1° | 23.6° |
| O3' | C3' | C2' | H2' | 157.0° | 122.7° |
| O3' | C3' | C2' | H2'' | 34.0° | 0.0° |
| O4' | C1' | N9 | C8 | 71.6° | 23.5° |
| O4' | C1' | C2' | N9 | 119.3° | 118.8° |
| O4' | C1' | C2' | H1' | 118.0° | 118.8° |
| O4' | C1' | N9 | H1' | 119.6° | 122.3° |
| O4' | C1' | N9 | C4 | 108.9° | 156.5° |
| C1' | O4' | C4' | H4' | 106.6° | 78.3° |
| O4' | C1' | C2' | H2' | 78.3° | 94.6° |
| O4' | C1' | C2' | H2'' | 158.6° | 142.6° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 179.4° | 180.0° |
| N7 | C8 | N9 | C4 | 0.2° | 0.0° |
| C8 | N7 | C5 | C4 | 0.1° | 0.0° |
| C8 | N7 | C5 | C6 | 179.9° | 179.7° |
| C8 | N9 | C1' | C2' | 46.4° | 91.9° |
| N9 | C8 | N7 | C5 | 0.2° | 0.0° |
| C8 | N9 | C1' | C4 | 179.5° | 179.9° |
| C8 | N9 | C4 | C5 | 0.1° | 0.1° |
| C8 | N9 | C4 | N3 | 179.8° | 180.0° |
| C8 | N9 | C1' | H1' | 168.8° | 145.8° |
| C2' | C1' | N9 | H1' | 122.4° | 122.3° |
| C2' | C1' | N9 | C4 | 133.1° | 88.2° |
| C1' | C2' | C3' | H3' | 151.2° | 118.7° |
| C1' | C2' | H2' | H2'' | 124.3° | 122.7° |
| N7 | C5 | C4 | N9 | 0.0° | 0.1° |
| N7 | C5 | C4 | C6 | 179.8° | 179.8° |
| N7 | C5 | C4 | N3 | 179.9° | 180.0° |
| N7 | C5 | C6 | O6 | 0.2° | 0.2° |
| N7 | C5 | C6 | N1 | 179.8° | 179.8° |
| C5 | N7 | C8 | H8 | 179.8° | 180.0° |
| C1' | N9 | C4 | C5 | 179.5° | 180.0° |
| C1' | N9 | C4 | N3 | 0.6° | 0.1° |
| N9 | C1' | C2' | H2' | 41.0° | 24.2° |
| N9 | C1' | C2' | H2'' | 82.1° | 98.6° |
| C1' | N9 | C8 | H8 | 0.6° | 0.0° |
| N9 | C4 | C5 | N3 | 179.9° | 179.9° |
| N9 | C4 | C5 | C6 | 179.8° | 179.8° |
| N9 | C4 | N3 | C2 | 179.9° | 179.9° |
| C4 | N9 | C1' | H1' | 10.7° | 34.1° |
| N9 | C4 | N3 | H3 | 0.1° | 0.1° |
| C4 | N9 | C8 | H8 | 179.8° | 179.9° |
| C4 | C5 | C6 | O6 | 179.5° | 180.0° |
| C4 | C5 | C6 | N1 | 0.1° | 0.4° |
| C5 | C4 | N3 | C2 | 0.2° | 0.0° |
| C5 | C4 | N3 | H3 | 179.8° | 180.0° |
| C6 | C5 | C4 | N3 | 0.3° | 0.2° |
| C5 | C6 | O6 | N1 | 179.6° | 179.6° |
| C5 | C6 | N1 | C2 | 0.2° | 0.5° |
| C5 | C6 | N1 | H1 | 179.8° | 179.8° |
| C4 | N3 | C2 | H3 | 180.0° | 180.0° |
| C4 | N3 | C2 | N1 | 0.1° | 0.0° |
| C4 | N3 | C2 | O2 | 179.1° | 180.0° |
| O6 | C6 | N1 | C2 | 179.8° | 179.9° |
| O6 | C6 | N1 | H1 | 0.2° | 0.2° |
| C6 | N1 | C2 | N3 | 0.3° | 0.3° |
| C6 | N1 | C2 | H1 | 180.0° | 179.7° |
| C6 | N1 | C2 | O2 | 178.9° | 179.7° |
| N3 | C2 | N1 | O2 | 179.2° | 179.9° |
| N3 | C2 | N1 | H1 | 179.7° | 179.9° |
| N1 | C2 | N3 | H3 | 179.9° | 180.0° |
| O2 | C2 | N1 | H1 | 1.1° | 0.0° |
| O2 | C2 | N3 | H3 | 0.9° | 0.1° |
| OP3 | P | OP2 | H4 | 124.5° | 60.0° |
| H5'' | C5' | C4' | H4' | 59.3° | 172.8° |
| H5' | C5' | C4' | H4' | 60.0° | 67.3° |
| H4' | C4' | C3' | H3' | 108.2° | 146.4° |
| H3' | C3' | O3' | H2 | 56.5° | 57.2° |
| H3' | C3' | C2' | H2' | 32.7° | 0.0° |
| H3' | C3' | C2' | H2'' | 90.3° | 122.7° |
| H2' | C2' | C1' | H1' | 163.6° | 146.5° |
| H2'' | C2' | C1' | H1' | 40.6° | 23.8° |
