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3YN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5C1sing1.43Å1.42Å
O5C5sing1.43Å1.40Å
C2C1sing1.53Å1.51Å
C2C3sing1.53Å1.52Å
C6C5sing1.53Å1.50Å
C2'C3'sing1.55Å1.50Å
C2'C1'sing1.54Å1.51Å
O1PPdoub1.48Å1.45Å
C1O1sing1.43Å1.41Å
O3C3sing1.43Å1.41Å
O4C4doub1.21Å1.19Å
C3'O3'sing1.43Å1.40Å
C3'C4'sing1.55Å1.50Å
C4C5sing1.51Å1.49Å
C4C3sing1.52Å1.49Å
C5AC51sing1.51Å1.49Å
C51C61doub1.35Å1.37Å
C51C41sing1.42Å1.46Å
C61N11sing1.37Å1.32Å
N11C1'sing1.46Å1.45Å
N11C21sing1.35Å1.40Å
O41C41doub1.22Å1.22Å
C41N31sing1.35Å1.31Å
C1'O4'sing1.44Å1.40Å
OPPPsing1.61Å1.57Å
OPPP2sing1.61Å1.58Å
PO5'sing1.61Å1.56Å
PO2Psing1.61Å1.44Å
N31C21sing1.35Å1.30Å
C21O21doub1.22Å1.22Å
O1P2sing1.61Å1.56Å
O5'C5'sing1.43Å1.41Å
C4'C5'sing1.53Å1.51Å
C4'O4'sing1.44Å1.41Å
O3PP2doub1.48Å1.47Å
P2O4Psing1.61Å1.46Å
O4PH1sing0.97Å0.95Å
C1H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C3H5sing1.09Å1.10Å
O3H6sing0.97Å0.95Å
C5H7sing1.09Å1.10Å
C6H8sing1.09Å1.10Å
C6H9sing1.09Å1.10Å
C6H10sing1.09Å1.10Å
O2PH11sing0.97Å0.95Å
C5'H12sing1.09Å1.10Å
C5'H13sing1.09Å1.10Å
C4'H14sing1.09Å1.10Å
C3'H15sing1.09Å1.10Å
O3'H16sing0.97Å0.95Å
C2'H17sing1.09Å1.10Å
C2'H18sing1.09Å1.10Å
C1'H19sing1.09Å1.10Å
N31H20sing0.97Å1.00Å
C5AH21sing1.09Å1.10Å
C5AH22sing1.09Å1.10Å
C5AH23sing1.09Å1.10Å
C61H24sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1O5C5115.4°114.1°
O5C1C2107.3°109.8°
O5C1O1112.7°109.4°
O5C1H2109.9°109.4°
O5C5C6109.0°109.8°
O5C5C4109.9°108.3°
O5C5H7110.0°109.7°
C1C2C3111.1°109.0°
C2C1O1108.2°109.4°
C2C1H2108.6°109.4°
C1C2H3109.1°109.6°
C1C2H4109.0°109.5°
C2C3O3110.9°109.8°
C2C3C4110.9°108.0°
C3C2H3109.1°109.6°
C3C2H4109.1°109.5°
C2C3H5108.0°109.8°
C6C5C4110.3°109.7°
C6C5H7108.7°109.7°
C5C6H8109.5°109.5°
C5C6H9109.5°109.5°
C5C6H10109.4°109.5°
C3'C2'C1'104.1°104.2°
C2'C3'O3'107.8°110.9°
C2'C3'C4'105.6°102.1°
C2'C3'H15111.3°110.9°
C3'C2'H17110.8°110.5°
C3'C2'H18110.8°110.5°
C2'C1'N11113.9°109.9°
C2'C1'O4'106.2°107.3°
C1'C2'H17110.8°110.5°
C1'C2'H18110.8°110.5°
C2'C1'H19107.7°109.9°
O1PPOPP103.8°109.5°
O1PPO5'110.0°109.5°
O1PPO2P116.9°109.5°
C1O1P2122.8°123.0°
O1C1H2110.0°109.4°
O3C3C4109.1°109.8°
O3C3H5109.5°109.8°
C3O3H6109.5°114.1°
O4C4C5122.9°121.1°
O4C4C3121.5°121.1°
O3'C3'C4'107.5°110.9°
O3'C3'H15112.9°110.8°
C3'O3'H16109.5°114.1°
C3'C4'C5'112.0°110.6°
C3'C4'O4'106.4°103.5°
C3'C4'H14110.0°110.8°
C4'C3'H15111.4°110.9°
C5C4C3115.6°117.8°
C4C5H7108.8°109.7°
C4C3H5108.4°109.7°
C5AC51C61122.4°120.4°
C5AC51C41118.6°120.4°
C51C5AH21109.5°109.4°
C51C5AH22109.5°109.5°
C51C5AH23109.5°109.5°
C61C51C41118.9°119.1°
C51C61N11118.1°119.7°
C51C61H24120.9°120.2°
C51C41O41120.8°120.3°
C51C41N31119.8°119.4°
C61N11C1'120.6°119.7°
C61N11C21120.5°120.6°
N11C61H24120.9°120.1°
C1'N11C21118.9°119.7°
N11C1'O4'111.4°109.9°
N11C1'H19108.5°110.0°
N11C21N31122.8°121.0°
N11C21O21120.8°119.5°
O41C41N31119.4°120.3°
C41N31C21119.9°120.2°
C41N31H20120.1°119.9°
C1'O4'C4'112.5°107.0°
O4'C1'H19109.1°109.9°
POPPP2132.1°134.0°
OPPPO5'108.0°109.5°
OPPPO2P109.4°109.5°
OPPP2O199.8°109.5°
OPPP2O3P111.7°109.5°
OPPP2O4P110.6°109.5°
O5'PO2P108.4°109.4°
PO5'C5'121.3°123.0°
PO2PH11109.5°114.0°
N31C21O21116.5°119.5°
C21N31H20120.0°119.9°
O1P2O3P108.9°109.5°
O1P2O4P105.7°109.5°
O5'C5'C4'110.5°109.5°
O5'C5'H12109.2°109.5°
O5'C5'H13109.2°109.5°
C5'C4'O4'107.2°110.6°
C4'C5'H12109.2°109.4°
C4'C5'H13109.2°109.5°
C5'C4'H14109.9°110.5°
O4'C4'H14111.3°110.6°
O3PP2O4P118.3°109.4°
P2O4PH1109.5°114.0°
H3C2H4109.5°109.6°
H8C6H9109.5°109.5°
H8C6H10109.5°109.5°
H9C6H10109.4°109.5°
H12C5'H13109.5°109.4°
H17C2'H18109.5°110.5°
H21C5AH22109.5°109.5°
H21C5AH23109.4°109.4°
H22C5AH23109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5C1C2O1121.8°120.0°
O5C1C2H2118.7°120.1°
O5C1C2C357.3°61.4°
C1O5C5C6179.6°64.0°
O5C1O1H2123.0°119.9°
C1O5C5C458.5°55.7°
O5C1O1P295.5°89.9°
O5C1C2H3177.6°58.5°
O5C1C2H462.9°178.7°
C1O5C5H761.3°175.4°
C5O5C1C264.4°64.9°
O5C5C6C4120.8°118.9°
O5C5C6H7119.9°120.6°
C5O5C1O154.7°175.0°
O5C5C4O4136.3°131.4°
O5C5C4H7120.5°119.7°
O5C5C4C347.1°48.7°
C5O5C1H2177.7°55.2°
O5C5C6H8180.0°58.9°
O5C5C6H960.0°61.1°
O5C5C6H1060.0°178.9°
C1C2C3H3120.3°119.9°
C1C2C3H4120.2°119.8°
C2C1O1H2118.6°119.9°
C1C2C3O3170.3°67.7°
C1C2C3C449.0°51.9°
C2C1O1P2146.0°149.8°
C1C2H3H4119.2°120.2°
C1C2C3H569.7°171.5°
C3C2C1O164.5°178.5°
C2C3O3C4122.4°118.5°
C2C3O3H5119.1°120.8°
C2C3C4O4139.3°131.6°
C2C3C4C544.1°48.4°
C2C3C4H5118.4°119.6°
C3C2C1H2176.0°58.7°
C3C2H3H4119.2°120.2°
C2C3O3H6129.6°180.0°
C6C5C4O416.0°108.8°
C6C5C4H7119.2°120.5°
C6C5C4C3167.4°71.2°
C5C6H8H9120.0°120.0°
C5C6H8H10120.0°120.0°
C5C6H9H10119.9°120.0°
C3'C2'C1'H17119.2°118.7°
C3'C2'C1'H18119.2°118.7°
C2'C3'O3'C4'113.4°112.7°
C2'C3'O3'H15123.4°123.6°
C2'C3'C4'H15121.0°118.3°
C3'C2'C1'N11145.0°121.5°
C3'C2'C1'O4'22.1°2.0°
C2'C3'C4'C5'102.9°155.5°
C2'C3'C4'O4'13.8°37.0°
C2'C3'C4'H14134.5°81.5°
C2'C3'O3'H16180.0°67.3°
C3'C2'H17H18122.5°122.6°
C3'C2'C1'H1994.7°117.4°
C1'C2'C3'O3'92.9°139.1°
C1'C2'C3'C4'21.7°20.9°
C2'C1'N11C6162.3°114.7°
C2'C1'N11O4'120.1°117.8°
C2'C1'N11H19119.9°121.1°
C2'C1'N11C21118.6°64.9°
C2'C1'O4'H19115.8°119.4°
C2'C1'O4'C4'14.3°26.5°
C1'C2'C3'H15142.7°97.4°
C1'C2'H17H18122.5°122.6°
O1PPOPPO5'116.7°120.0°
O1PPOPPO2P125.5°120.0°
O1PPOPPP2159.8°45.0°
O1PPO5'O2P129.0°120.0°
O1PPO5'C5'73.0°54.9°
O1PPO2PH110.0°180.0°
C1O1P2OPP45.5°175.0°
C1O1P2O3P71.6°55.0°
C1O1P2O4P160.3°64.9°
O1C1C2H355.7°61.5°
O1C1C2H4175.2°58.7°
O3C3C4O416.9°108.7°
O3C3C4C5166.5°71.2°
O3C3C4H5119.2°120.7°
O3C3C2H369.4°172.4°
O3C3C2H450.1°52.1°
O4C4C5C3176.6°179.9°
O4C4C3H5102.3°12.0°
O4C4C5H7103.2°11.7°
O3'C3'C4'H15124.2°123.5°
O3'C3'C4'C5'142.2°86.3°
O3'C3'C4'O4'101.0°155.2°
O3'C3'C4'H1419.7°36.7°
O3'C3'C2'H17147.9°102.2°
O3'C3'C2'H1826.3°20.4°
C3'C4'O4'C1'0.3°40.1°
C3'C4'C5'O5'73.4°179.5°
C3'C4'C5'O4'116.3°114.1°
C3'C4'C5'H14122.6°123.1°
C3'C4'O4'H14119.8°118.7°
C3'C4'C5'H12166.5°60.5°
C3'C4'C5'H1346.8°59.4°
C4'C3'O3'H1666.6°180.0°
C4'C3'C2'H1797.4°139.6°
C4'C3'C2'H18140.9°97.8°
C5C4C3H574.3°168.1°
C4C5C6H859.2°60.0°
C4C5C6H960.9°180.0°
C4C5C6H10179.2°60.0°
C4C3C2H3169.2°68.0°
C4C3C2H471.3°171.7°
C4C3O3H67.2°61.5°
C3C4C5H773.4°168.3°
C5AC51C61C41179.3°179.3°
C5AC51C61N11179.0°180.0°
C5AC51C41O410.6°0.3°
C5AC51C41N31179.4°179.7°
C51C5AH21H22120.0°120.0°
C51C5AH21H23120.0°120.0°
C51C5AH22H23120.0°120.1°
C5AC51C61H241.1°0.7°
C51C61N11H24180.0°179.4°
C51C61N11C1'179.9°179.7°
C51C61N11C210.8°0.7°
C61C51C41O41180.0°179.7°
C61C51C41N310.1°0.4°
C61C51C5AH21180.0°90.0°
C61C51C5AH2260.0°150.0°
C61C51C5AH2360.0°29.9°
C41C51C61N110.4°0.7°
C51C41O41N31179.9°180.0°
C51C41N31C210.0°0.1°
C51C41N31H20180.0°180.0°
C41C51C5AH210.6°90.6°
C41C51C5AH22120.6°29.4°
C41C51C5AH23119.3°149.4°
C41C51C61H24179.6°180.0°
C61N11C1'C21179.1°179.6°
C61N11C1'O4'57.7°127.5°
C61N11C21N310.9°0.4°
C61N11C21O21179.4°179.7°
C61N11C1'H19177.8°6.4°
N11C1'O4'H19119.7°121.2°
C1'N11C21N31180.0°180.0°
C1'N11C21O210.3°0.0°
N11C1'O4'C4'138.8°146.0°
N11C1'C2'H1725.8°2.7°
N11C1'C2'H1895.8°119.9°
C1'N11C61H240.0°0.3°
N11C21N31C410.4°0.1°
C21N11C1'O4'121.4°52.9°
N11C21N31O21179.7°179.9°
C21N11C1'H191.3°174.0°
N11C21N31H20179.6°180.0°
C21N11C61H24179.1°180.0°
O41C41N31C21180.0°179.9°
O41C41N31H200.0°0.0°
C41N31C21H20180.0°179.9°
C41N31C21O21179.8°180.0°
C1'O4'C4'C5'120.3°158.6°
C1'O4'C4'H14119.5°78.6°
O4'C1'C2'H1797.1°116.7°
O4'C1'C2'H18141.2°120.7°
OPPPO5'O2P118.4°120.0°
POPPP2O1171.1°164.9°
OPPPO5'C5'174.3°174.9°
POPPP2O3P73.9°45.0°
POPPP2O4P60.1°75.0°
OPPPO2PH11117.6°60.0°
P2OPPPO5'43.0°165.0°
P2OPPPO2P74.7°75.0°
OPPP2O1O3P117.0°120.0°
OPPP2O1O4P114.8°120.0°
OPPP2O3PO4P130.1°120.0°
OPPP2O4PH1130.6°60.0°
PO5'C5'C4'171.0°180.0°
O5'PO2PH11124.9°60.0°
PO5'C5'H1268.8°60.1°
PO5'C5'H1350.9°59.9°
O2PPO5'C5'55.9°65.0°
O21C21N31H200.1°0.0°
O1P2O3PO4P120.7°120.0°
O1P2O4PH1122.3°60.0°
P2O1C1H227.4°30.0°
O5'C5'C4'H12120.1°120.0°
O5'C5'C4'H13120.1°120.1°
O5'C5'C4'O4'170.3°66.4°
O5'C5'H12H13119.5°120.0°
O5'C5'C4'H1449.2°56.5°
C5'C4'O4'H14120.2°122.8°
C4'C5'H12H13119.6°120.0°
C5'C4'C3'H1518.1°37.3°
O4'C4'C5'H1250.2°53.5°
O4'C4'C5'H1369.5°173.5°
O4'C4'C3'H15134.8°81.2°
C4'O4'C1'H19101.5°92.9°
O3PP2O4PH10.0°180.0°
H2C1C2H363.7°178.6°
H2C1C2H455.8°61.1°
H3C2C3H550.6°51.6°
H4C2C3H5170.1°68.7°
H5C3O3H6111.3°59.2°
H7C5C6H860.1°179.5°
H7C5C6H9179.9°59.5°
H7C5C6H1060.0°60.5°
H8C6H9H10120.0°120.0°
H12C5'C4'H1470.9°176.4°
H13C5'C4'H14169.3°63.6°
H14C4'C3'H15104.5°160.2°
H15C3'O3'H1656.7°56.4°
H15C3'C2'H1723.6°21.3°
H15C3'C2'H1898.1°144.0°
H17C2'C1'H19146.2°123.9°
H18C2'C1'H1924.5°1.3°
H21C5AH22H23120.0°120.0°

218853

PDB entries from 2024-04-24

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