Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3XF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C3'sing1.43Å1.42Å
O1C2sing1.43Å1.43Å
C3C2sing1.53Å1.53Å
C2H2sing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
N4C3sing1.47Å1.46Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C5N4sing1.47Å1.46Å
N4HN4sing1.01Å1.00Å
C6C5sing1.53Å1.53Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
F7C6sing1.40Å1.33Å
F8C6sing1.40Å1.34Å
C6C12sing1.53Å1.54Å
C2'N1'sing1.49Å1.45Å
N1'C5'sing1.49Å1.44Å
N1'HN1'sing1.01Å1.00Å
C12N11sing1.47Å1.46Å
N11C16sing1.47Å1.46Å
N11HN11sing1.01Å1.00Å
C13C12sing1.53Å1.54Å
C12H12sing1.09Å1.10Å
C13C14sing1.53Å1.54Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C14C15sing1.53Å1.54Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15C16sing1.53Å1.54Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
N1AC2Adoub1.32Å1.33ÅAromatic
N1AC6Asing1.32Å1.34ÅAromatic
C2'C3'sing1.54Å1.53Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C7AC2Asing1.51Å1.50Å
C2AC3Asing1.38Å1.39ÅAromatic
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
C3AC4Adoub1.39Å1.39ÅAromatic
C3AH3AAsing1.08Å1.08Å
C5'C4'sing1.54Å1.52Å
C7AC4'sing1.53Å1.51Å
C4'H4'sing1.09Å1.10Å
C5AC4Asing1.38Å1.39ÅAromatic
C4AC8Asing1.51Å1.50Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C6AC5Adoub1.39Å1.38ÅAromatic
C5AH5AAsing1.08Å1.08Å
N6AC6Asing1.39Å1.36Å
N6AHN6Asing0.97Å1.00Å
N6AHN6Bsing0.97Å1.00Å
C7AH7Asing1.09Å1.10Å
C7AH7AAsing1.09Å1.10Å
C8AH8Asing1.09Å1.10Å
C8AH8AAsing1.09Å1.10Å
C8AH8ABsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3'O1C2111.8°114.0°
O1C3'C2'110.9°110.3°
O1C3'C4'111.7°110.3°
O1C3'H3'105.9°110.3°
O1C2C3108.5°109.5°
O1C2H2109.8°109.5°
O1C2H2A109.8°109.4°
C3C2H2109.8°109.5°
C3C2H2A109.8°109.5°
C2C3N4112.2°109.5°
C2C3H3108.6°109.5°
C2C3H3A108.5°109.5°
H2C2H2A109.1°109.5°
N4C3H3108.6°109.5°
N4C3H3A108.6°109.5°
C3N4C5119.5°111.0°
C3N4HN4106.3°111.0°
H3C3H3A110.4°109.4°
C5N4HN4106.3°110.9°
N4C5C6114.7°109.5°
N4C5H5107.8°109.4°
N4C5H5A107.8°109.5°
C6C5H5107.7°109.5°
C6C5H5A107.8°109.5°
C5C6F7106.7°109.4°
C5C6F8112.2°109.5°
C5C6C12109.1°109.4°
H5C5H5A111.2°109.5°
F7C6F8110.0°109.5°
F7C6C12108.1°109.5°
F8C6C12110.6°109.5°
C6C12N11112.6°109.5°
C6C12C13115.5°109.5°
C6C12H12104.0°109.5°
C2'N1'C5'113.1°104.3°
C2'N1'HN1'108.3°111.0°
N1'C2'C3'105.7°104.6°
N1'C2'H2'110.7°110.4°
N1'C2'H2'A110.8°110.4°
C5'N1'HN1'108.3°111.0°
N1'C5'C4'105.6°104.6°
N1'C5'H5'110.8°110.4°
N1'C5'H5'A110.8°110.4°
C12N11C16122.6°111.2°
C12N11HN11105.3°110.9°
N11C12C13113.1°109.5°
N11C12H12107.0°109.5°
C16N11HN11105.3°111.0°
N11C16C15114.2°109.5°
N11C16H16107.9°109.5°
N11C16H16A107.9°109.5°
C13C12H12103.4°109.4°
C12C13C14114.4°109.3°
C12C13H13107.9°109.5°
C12C13H13A107.8°109.5°
C14C13H13107.8°109.5°
C14C13H13A107.9°109.5°
C13C14C15116.9°109.1°
C13C14H14107.1°109.6°
C13C14H14A107.1°109.5°
H13C13H13A111.1°109.5°
C15C14H14107.0°109.5°
C15C14H14A107.1°109.5°
C14C15C16114.8°109.3°
C14C15H15107.8°109.5°
C14C15H15A107.7°109.5°
H14C14H14A111.8°109.6°
C16C15H15107.7°109.5°
C16C15H15A107.7°109.5°
C15C16H16107.9°109.5°
C15C16H16A107.9°109.4°
H15C15H15A111.1°109.5°
H16C16H16A111.0°109.4°
C2AN1AC6A123.3°121.6°
N1AC2AC7A117.5°119.6°
N1AC2AC3A119.5°120.8°
N1AC6AC5A119.5°120.6°
N1AC6AN6A117.9°119.7°
C3'C2'H2'110.8°110.4°
C3'C2'H2'A110.7°110.4°
C2'C3'C4'105.9°105.1°
C2'C3'H3'111.6°110.4°
H2'C2'H2'A108.2°110.5°
C7AC2AC3A123.0°119.6°
C2AC7AC4'108.9°109.5°
C2AC7AH7A109.7°109.5°
C2AC7AH7AA109.7°109.4°
C2AC3AC4A118.9°119.3°
C2AC3AH3AA120.5°120.3°
C4'C3'H3'110.9°110.4°
C3'C4'C5'106.6°105.1°
C3'C4'C7A112.8°110.3°
C3'C4'H4'109.4°110.3°
C4AC3AH3AA120.6°120.4°
C3AC4AC5A120.0°118.5°
C3AC4AC8A119.8°120.7°
C5'C4'C7A109.9°110.4°
C5'C4'H4'112.3°110.3°
C4'C5'H5'110.8°110.4°
C4'C5'H5'A110.8°110.4°
C7AC4'H4'106.0°110.3°
C4'C7AH7A109.6°109.5°
C4'C7AH7AA109.6°109.5°
C5AC4AC8A120.2°120.8°
C4AC5AC6A118.8°119.1°
C4AC5AH5AA120.6°120.4°
C4AC8AH8A109.5°109.4°
C4AC8AH8AA109.5°109.4°
C4AC8AH8AB109.5°109.5°
H5'C5'H5'A108.1°110.5°
C6AC5AH5AA120.6°120.5°
C5AC6AN6A122.6°119.7°
C6AN6AHN6A109.5°120.1°
C6AN6AHN6B109.5°120.0°
HN6AN6AHN6B109.4°119.9°
H7AC7AH7AA109.3°109.5°
H8AC8AH8AA109.5°109.5°
H8AC8AH8AB109.5°109.5°
H8AAC8AH8AB109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C3'O1C2C3178.0°180.0°
C3'O1C2H258.0°60.0°
C3'O1C2H2A62.0°60.0°
O1C3'C2'N1'134.1°142.7°
O1C3'C2'C4'121.4°118.9°
O1C3'C2'H3'117.8°122.1°
O1C3'C2'H2'105.9°98.5°
O1C3'C2'H2'A14.1°24.0°
O1C3'C4'H3'117.8°122.2°
O1C3'C4'C5'138.6°118.9°
O1C3'C4'C7A18.0°0.1°
O1C3'C4'H4'99.7°122.2°
O1C2C3H2120.0°120.0°
O1C2C3H2A120.0°120.0°
O1C2H2H2A120.4°119.9°
O1C2C3N485.6°65.0°
O1C2C3H334.4°174.9°
O1C2C3H3A154.4°55.0°
C2O1C3'C2'124.5°91.5°
C2O1C3'C4'117.5°152.9°
C2O1C3'H3'3.3°30.7°
C3C2H2H2A120.4°120.1°
C2C3N4H3120.0°120.0°
C2C3N4H3A120.0°120.0°
C2C3H3H3A118.8°120.0°
C2C3N4C553.0°180.0°
C2C3N4HN467.0°56.1°
H2C2C3N4154.4°55.0°
H2C2C3H385.6°65.0°
H2C2C3H3A34.4°175.0°
H2AC2C3N434.4°175.0°
H2AC2C3H3154.4°55.0°
H2AC2C3H3A85.6°65.0°
N4C3H3H3A118.9°120.0°
C3N4C5HN4120.0°124.0°
C3N4C5C6159.3°180.0°
C3N4C5H539.4°60.0°
C3N4C5H5A80.7°60.0°
H3C3N4C5173.0°60.0°
H3C3N4HN453.0°176.1°
H3AC3N4C567.0°60.0°
H3AC3N4HN4173.0°63.9°
N4C5C6H5120.0°119.9°
N4C5C6H5A120.0°120.0°
N4C5H5H5A117.9°120.0°
N4C5C6F791.1°60.1°
N4C5C6F829.6°60.0°
N4C5C6C12152.4°180.0°
HN4N4C5C680.7°56.1°
HN4N4C5H5159.4°176.0°
HN4N4C5H5A39.3°64.0°
C6C5H5H5A117.8°120.0°
C5C6F7F8122.0°120.0°
C5C6F7C12117.2°120.0°
C5C6F8C12122.0°120.0°
C5C6C12N1118.4°60.0°
C5C6C12C13150.4°179.9°
C5C6C12H1297.1°60.0°
H5C5C6F7149.0°180.0°
H5C5C6F890.4°60.0°
H5C5C6C1232.4°60.0°
H5AC5C6F728.9°60.0°
H5AC5C6F8149.5°180.0°
H5AC5C6C1287.6°60.0°
F7C6F8C12119.3°120.0°
F7C6C12N11134.1°180.0°
F7C6C12C1393.9°60.0°
F7C6C12H1218.6°60.0°
F8C6C12N11105.4°60.0°
F8C6C12C1326.6°60.1°
F8C6C12H12139.1°180.0°
C6C12N11C13133.2°120.0°
C6C12N11H12113.7°120.0°
C6C12N11C1699.8°178.3°
C6C12N11HN1120.2°57.6°
C6C12C13H12112.9°120.0°
C6C12C13C1487.3°179.2°
C6C12C13H13152.7°60.8°
C6C12C13H13A32.7°59.3°
C2'N1'C5'HN1'120.0°119.6°
N1'C2'C3'H2'120.0°118.8°
N1'C2'C3'H2'A120.0°118.7°
N1'C2'H2'H2'A121.5°122.4°
N1'C2'C3'C4'12.8°23.9°
N1'C2'C3'H3'108.1°95.1°
C2'N1'C5'C4'8.3°39.5°
C2'N1'C5'H5'128.3°79.3°
C2'N1'C5'H5'A111.7°158.3°
C5'N1'C2'C3'2.8°39.5°
C5'N1'C2'H2'122.9°158.2°
C5'N1'C2'H2'A117.1°79.2°
N1'C5'C4'C3'16.0°23.8°
N1'C5'C4'H5'120.0°118.8°
N1'C5'C4'H5'A120.0°118.8°
N1'C5'C4'C7A106.4°142.8°
N1'C5'C4'H4'135.8°95.1°
N1'C5'H5'H5'A121.5°122.4°
HN1'N1'C2'C3'122.8°159.0°
HN1'N1'C2'H2'117.2°82.2°
HN1'N1'C2'H2'A2.8°40.3°
HN1'N1'C5'C4'111.7°159.1°
HN1'N1'C5'H5'8.3°40.3°
HN1'N1'C5'H5'A128.2°82.1°
C12N11C16HN11120.0°124.1°
N11C12C13H12115.3°120.0°
N11C12C13C1444.5°59.2°
N11C12C13H1375.5°179.1°
N11C12C13H13A164.5°60.8°
C12N11C16C159.5°61.7°
C12N11C16H16129.5°178.2°
C12N11C16H16A110.5°58.2°
C16N11C12C1333.4°61.7°
C16N11C12H12146.5°58.2°
N11C16C15C1440.4°59.2°
N11C16C15H16120.0°120.1°
N11C16C15H16A120.0°120.0°
N11C16C15H15160.4°179.1°
N11C16C15H15A79.6°60.8°
N11C16H16H16A118.1°120.0°
HN11N11C12C13153.4°62.4°
HN11N11C12H1293.5°177.6°
HN11N11C16C15110.5°62.4°
HN11N11C16H169.5°57.7°
HN11N11C16H16A129.5°177.7°
C12C13C14H13120.0°120.0°
C12C13C14H13A120.0°120.0°
C12C13H13H13A118.0°120.1°
C12C13C14C1514.3°57.6°
C12C13C14H14134.3°62.2°
C12C13C14H14A105.7°177.5°
H12C12C13C14159.8°60.8°
H12C12C13H1339.8°59.1°
H12C12C13H13A80.2°179.2°
C14C13H13H13A118.0°120.1°
C13C14C15H14120.0°119.9°
C13C14C15H14A120.0°119.9°
C13C14H14H14A116.9°120.2°
C13C14C15C1627.9°57.6°
C13C14C15H15147.9°177.6°
C13C14C15H15A92.1°62.3°
H13C13C14C15105.7°177.6°
H13C13C14H1414.3°57.8°
H13C13C14H14A134.3°62.5°
H13AC13C14C15134.2°62.3°
H13AC13C14H14105.8°177.8°
H13AC13C14H14A14.2°57.6°
C15C14H14H14A116.9°120.1°
C14C15C16H15120.0°119.9°
C14C15C16H15A120.0°120.0°
C14C15H15H15A117.8°120.1°
C14C15C16H16160.4°179.2°
C14C15C16H16A79.6°60.8°
H14C14C15C1692.1°62.3°
H14C14C15H1527.9°57.6°
H14C14C15H15A147.9°177.8°
H14AC14C15C16147.9°177.5°
H14AC14C15H1592.1°62.6°
H14AC14C15H15A27.9°57.6°
C16C15H15H15A117.8°120.1°
C15C16H16H16A118.1°119.9°
H15C15C16H1679.6°60.8°
H15C15C16H16A40.4°59.1°
H15AC15C16H1640.4°59.3°
H15AC15C16H16A160.4°179.2°
N1AC2AC7AC3A179.5°180.0°
N1AC2AC3AC4A0.2°0.0°
N1AC2AC3AH3AA179.8°180.0°
N1AC2AC7AC4'80.1°55.0°
C2AN1AC6AC5A0.4°0.0°
C2AN1AC6AN6A179.7°180.0°
N1AC2AC7AH7A39.8°65.0°
N1AC2AC7AH7AA159.9°175.0°
C6AN1AC2AC7A179.5°180.0°
C6AN1AC2AC3A0.0°0.0°
N1AC6AC5AC4A0.5°0.0°
N1AC6AC5AN6A180.0°180.0°
N1AC6AC5AH5AA179.5°180.0°
N1AC6AN6AHN6A0.0°0.0°
N1AC6AN6AHN6B120.0°180.0°
C3'C2'H2'H2'A121.5°122.4°
C2'C3'C4'H3'121.3°119.0°
C2'C3'C4'C5'17.8°0.0°
C2'C3'C4'C7A102.8°119.0°
C2'C3'C4'H4'139.4°118.9°
H2'C2'C3'C4'132.8°142.7°
H2'C2'C3'H3'11.9°23.7°
H2'AC2'C3'C4'107.2°94.9°
H2'AC2'C3'H3'131.9°146.1°
C2AC7AC4'C3'170.4°175.0°
C7AC2AC3AC4A179.7°180.0°
C7AC2AC3AH3AA0.3°0.0°
C2AC7AC4'C5'70.9°69.3°
C2AC7AC4'H7A120.0°120.0°
C2AC7AC4'H7AA120.0°119.9°
C2AC7AC4'H4'50.7°52.9°
C2AC7AH7AH7AA120.3°120.0°
C2AC3AC4AH3AA180.0°180.0°
C3AC2AC7AC4'100.4°125.0°
C2AC3AC4AC5A0.1°0.0°
C2AC3AC4AC8A179.1°180.0°
C3AC2AC7AH7A139.6°115.0°
C3AC2AC7AH7AA19.6°5.0°
C3'C4'C5'C7A122.4°119.0°
C3'C4'C5'H4'119.8°118.9°
C3'C4'C7AH4'119.7°122.1°
C3'C4'C5'H5'136.0°94.9°
C3'C4'C5'H5'A104.0°142.6°
C3'C4'C7AH7A69.6°65.0°
C3'C4'C7AH7AA50.4°55.0°
H3'C3'C4'C5'103.5°118.9°
H3'C3'C4'C7A135.9°122.0°
H3'C3'C4'H4'18.1°0.1°
C3AC4AC5AC8A179.1°179.9°
C3AC4AC5AC6A0.3°0.0°
C3AC4AC5AH5AA179.7°180.0°
C3AC4AC8AH8A90.4°90.0°
C3AC4AC8AH8AA149.5°150.0°
C3AC4AC8AH8AB29.6°30.0°
H3AAC3AC4AC5A179.9°180.0°
H3AAC3AC4AC8A0.9°0.0°
C5'C4'C7AH4'121.6°122.2°
C4'C5'H5'H5'A121.6°122.4°
C5'C4'C7AH7A49.1°50.7°
C5'C4'C7AH7AA169.1°170.7°
C7AC4'C5'H5'13.6°24.0°
C7AC4'C5'H5'A133.6°98.4°
C4'C7AH7AH7AA120.2°120.0°
H4'C4'C5'H5'104.2°146.2°
H4'C4'C5'H5'A15.8°23.7°
H4'C4'C7AH7A170.7°172.9°
H4'C4'C7AH7AA69.3°67.1°
C4AC5AC6AH5AA180.0°180.0°
C4AC5AC6AN6A179.5°180.0°
C5AC4AC8AH8A90.4°90.0°
C5AC4AC8AH8AA29.6°29.9°
C5AC4AC8AH8AB149.6°149.9°
C8AC4AC5AC6A179.4°180.0°
C8AC4AC5AH5AA0.6°0.1°
C4AC8AH8AH8AA120.0°119.9°
C4AC8AH8AH8AB120.0°120.0°
C4AC8AH8AAH8AB120.0°120.0°
C5AC6AN6AHN6A180.0°180.0°
C5AC6AN6AHN6B60.0°0.0°
H5AAC5AC6AN6A0.5°0.0°
C6AN6AHN6AHN6B120.0°180.0°
H8AC8AH8AAH8AB120.0°120.1°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon