3VZ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O60 | C59 | doub | 1.21Å | 1.25Å | |
C59 | C58 | sing | 1.51Å | 1.54Å | |
C59 | O64 | sing | 1.34Å | 1.27Å | |
C58 | C15 | sing | 1.51Å | 1.53Å | |
C1 | C6 | doub | 1.36Å | 1.40Å | Aromatic |
C1 | C2 | sing | 1.40Å | 1.41Å | Aromatic |
C15 | C2 | sing | 1.47Å | 1.41Å | Aromatic |
C15 | C14 | doub | 1.34Å | 1.40Å | Aromatic |
C6 | C5 | sing | 1.40Å | 1.40Å | Aromatic |
C2 | C3 | doub | 1.41Å | 1.40Å | Aromatic |
C14 | N13 | sing | 1.37Å | 1.36Å | Aromatic |
C5 | C4 | doub | 1.39Å | 1.40Å | Aromatic |
C5 | C20 | sing | 1.48Å | 1.50Å | |
C3 | N13 | sing | 1.38Å | 1.36Å | Aromatic |
C3 | C4 | sing | 1.39Å | 1.40Å | Aromatic |
N13 | C37 | sing | 1.47Å | 1.49Å | |
C26 | C20 | doub | 1.39Å | 1.41Å | Aromatic |
C26 | C25 | sing | 1.39Å | 1.41Å | Aromatic |
C20 | C22 | sing | 1.39Å | 1.40Å | Aromatic |
N33 | C25 | sing | 1.40Å | 1.36Å | |
C25 | C24 | doub | 1.39Å | 1.39Å | Aromatic |
C54 | C52 | sing | 1.53Å | 1.53Å | |
C22 | C23 | doub | 1.39Å | 1.40Å | Aromatic |
C37 | C38 | sing | 1.51Å | 1.51Å | |
C38 | C41 | doub | 1.38Å | 1.39Å | Aromatic |
C38 | C45 | sing | 1.38Å | 1.40Å | Aromatic |
C41 | C42 | sing | 1.38Å | 1.40Å | Aromatic |
C45 | C44 | doub | 1.38Å | 1.40Å | Aromatic |
C42 | C43 | doub | 1.38Å | 1.41Å | Aromatic |
C24 | C23 | sing | 1.39Å | 1.39Å | Aromatic |
C44 | C43 | sing | 1.38Å | 1.41Å | Aromatic |
C43 | C52 | sing | 1.51Å | 1.49Å | |
C23 | N35 | sing | 1.40Å | 1.35Å | |
C52 | C56 | sing | 1.53Å | 1.54Å | |
C1 | H1 | sing | 1.08Å | 1.08Å | |
C4 | H2 | sing | 1.08Å | 1.08Å | |
C14 | H3 | sing | 1.08Å | 1.08Å | |
C22 | H4 | sing | 1.08Å | 1.08Å | |
C24 | H5 | sing | 1.08Å | 1.08Å | |
O64 | H6 | sing | 0.97Å | 0.95Å | |
C58 | H7 | sing | 1.09Å | 1.10Å | |
C58 | H8 | sing | 1.09Å | 1.10Å | |
C37 | H9 | sing | 1.09Å | 1.10Å | |
C37 | H10 | sing | 1.09Å | 1.10Å | |
C41 | H11 | sing | 1.08Å | 1.08Å | |
C42 | H12 | sing | 1.08Å | 1.08Å | |
C52 | H13 | sing | 1.09Å | 1.10Å | |
C54 | H14 | sing | 1.09Å | 1.10Å | |
C54 | H15 | sing | 1.09Å | 1.10Å | |
C54 | H16 | sing | 1.09Å | 1.10Å | |
C56 | H17 | sing | 1.09Å | 1.10Å | |
C56 | H18 | sing | 1.09Å | 1.10Å | |
C56 | H19 | sing | 1.09Å | 1.10Å | |
C44 | H20 | sing | 1.08Å | 1.08Å | |
C45 | H21 | sing | 1.08Å | 1.08Å | |
C6 | H22 | sing | 1.08Å | 1.08Å | |
N35 | H23 | sing | 0.97Å | 1.00Å | |
N35 | H24 | sing | 0.97Å | 1.00Å | |
N33 | H25 | sing | 0.97Å | 1.00Å | |
N33 | H26 | sing | 0.97Å | 1.00Å | |
C26 | H27 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O60 | C59 | C58 | 121.3° | 120.0° |
O60 | C59 | O64 | 120.4° | 120.0° |
C58 | C59 | O64 | 118.3° | 120.0° |
C59 | C58 | C15 | 110.5° | 109.5° |
C59 | C58 | H7 | 109.2° | 109.5° |
C59 | C58 | H8 | 109.2° | 109.5° |
C59 | O64 | H6 | 109.5° | 117.0° |
C58 | C15 | C2 | 128.1° | 126.5° |
C58 | C15 | C14 | 127.2° | 126.5° |
C15 | C58 | H7 | 109.2° | 109.4° |
C15 | C58 | H8 | 109.2° | 109.4° |
C6 | C1 | C2 | 120.1° | 119.9° |
C1 | C6 | C5 | 119.9° | 120.4° |
C6 | C1 | H1 | 120.0° | 120.0° |
C1 | C6 | H22 | 120.0° | 119.8° |
C1 | C2 | C15 | 131.6° | 133.9° |
C1 | C2 | C3 | 120.3° | 120.1° |
C2 | C1 | H1 | 119.9° | 120.1° |
C2 | C15 | C14 | 104.7° | 107.0° |
C15 | C2 | C3 | 108.1° | 106.0° |
C15 | C14 | N13 | 110.5° | 110.0° |
C15 | C14 | H3 | 124.8° | 125.0° |
C6 | C5 | C4 | 119.2° | 120.4° |
C6 | C5 | C20 | 121.4° | 119.8° |
C5 | C6 | H22 | 120.0° | 119.8° |
C2 | C3 | N13 | 108.3° | 107.1° |
C2 | C3 | C4 | 118.8° | 119.5° |
C14 | N13 | C3 | 108.4° | 109.9° |
C14 | N13 | C37 | 127.4° | 125.1° |
N13 | C14 | H3 | 124.7° | 125.0° |
C4 | C5 | C20 | 119.4° | 119.8° |
C5 | C4 | C3 | 121.7° | 119.7° |
C5 | C4 | H2 | 119.1° | 120.1° |
C5 | C20 | C26 | 123.1° | 120.0° |
C5 | C20 | C22 | 118.6° | 120.0° |
N13 | C3 | C4 | 132.9° | 133.4° |
C3 | N13 | C37 | 124.2° | 125.1° |
C3 | C4 | H2 | 119.2° | 120.2° |
N13 | C37 | C38 | 111.4° | 109.5° |
N13 | C37 | H9 | 109.0° | 109.5° |
N13 | C37 | H10 | 109.0° | 109.5° |
C20 | C26 | C25 | 121.4° | 120.0° |
C26 | C20 | C22 | 118.3° | 119.9° |
C20 | C26 | H27 | 119.3° | 120.0° |
C26 | C25 | N33 | 122.4° | 120.0° |
C26 | C25 | C24 | 119.3° | 120.0° |
C25 | C26 | H27 | 119.3° | 120.0° |
C20 | C22 | C23 | 119.7° | 119.9° |
C20 | C22 | H4 | 120.1° | 120.1° |
N33 | C25 | C24 | 118.3° | 120.0° |
C25 | N33 | H25 | 109.5° | 120.0° |
C25 | N33 | H26 | 109.5° | 120.0° |
C25 | C24 | C23 | 119.8° | 120.1° |
C25 | C24 | H5 | 120.1° | 119.9° |
C54 | C52 | C43 | 111.6° | 109.5° |
C54 | C52 | C56 | 112.2° | 109.5° |
C54 | C52 | H13 | 108.0° | 109.5° |
C52 | C54 | H14 | 109.5° | 109.4° |
C52 | C54 | H15 | 109.5° | 109.5° |
C52 | C54 | H16 | 109.5° | 109.4° |
C22 | C23 | C24 | 121.5° | 120.0° |
C22 | C23 | N35 | 119.8° | 120.0° |
C23 | C22 | H4 | 120.1° | 120.0° |
C37 | C38 | C41 | 119.5° | 120.0° |
C37 | C38 | C45 | 120.3° | 120.0° |
C38 | C37 | H9 | 109.0° | 109.4° |
C38 | C37 | H10 | 109.0° | 109.5° |
C41 | C38 | C45 | 120.2° | 120.0° |
C38 | C41 | C42 | 120.2° | 120.0° |
C38 | C41 | H11 | 119.9° | 120.1° |
C38 | C45 | C44 | 120.1° | 120.0° |
C38 | C45 | H21 | 120.0° | 120.0° |
C41 | C42 | C43 | 120.1° | 120.0° |
C42 | C41 | H11 | 119.9° | 120.0° |
C41 | C42 | H12 | 120.0° | 120.0° |
C45 | C44 | C43 | 120.1° | 120.0° |
C45 | C44 | H20 | 120.0° | 119.9° |
C44 | C45 | H21 | 120.0° | 120.0° |
C42 | C43 | C44 | 119.4° | 120.0° |
C42 | C43 | C52 | 119.2° | 120.0° |
C43 | C42 | H12 | 119.9° | 120.0° |
C24 | C23 | N35 | 118.7° | 120.0° |
C23 | C24 | H5 | 120.1° | 119.9° |
C44 | C43 | C52 | 121.4° | 120.0° |
C43 | C44 | H20 | 120.0° | 120.1° |
C43 | C52 | C56 | 108.6° | 109.5° |
C43 | C52 | H13 | 108.4° | 109.4° |
C23 | N35 | H23 | 109.5° | 120.0° |
C23 | N35 | H24 | 109.5° | 120.0° |
C56 | C52 | H13 | 107.9° | 109.5° |
C52 | C56 | H17 | 109.5° | 109.5° |
C52 | C56 | H18 | 109.5° | 109.5° |
C52 | C56 | H19 | 109.4° | 109.5° |
H7 | C58 | H8 | 109.4° | 109.5° |
H9 | C37 | H10 | 109.4° | 109.5° |
H14 | C54 | H15 | 109.4° | 109.5° |
H14 | C54 | H16 | 109.5° | 109.5° |
H15 | C54 | H16 | 109.5° | 109.5° |
H17 | C56 | H18 | 109.5° | 109.5° |
H17 | C56 | H19 | 109.4° | 109.5° |
H18 | C56 | H19 | 109.5° | 109.4° |
H23 | N35 | H24 | 109.5° | 120.0° |
H25 | N33 | H26 | 109.5° | 120.1° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O60 | C59 | C58 | O64 | 179.0° | 180.0° |
O60 | C59 | C58 | C15 | 118.4° | 0.0° |
O60 | C59 | O64 | H6 | 0.0° | 0.0° |
O60 | C59 | C58 | H7 | 1.8° | 120.0° |
O60 | C59 | C58 | H8 | 121.4° | 120.0° |
C59 | C58 | C15 | H7 | 120.2° | 120.0° |
C59 | C58 | C15 | H8 | 120.2° | 120.0° |
C59 | C58 | C15 | C2 | 44.0° | 85.0° |
C59 | C58 | C15 | C14 | 133.8° | 95.0° |
C58 | C59 | O64 | H6 | 179.0° | 180.0° |
C59 | C58 | H7 | H8 | 119.5° | 120.0° |
O64 | C59 | C58 | C15 | 60.6° | 180.0° |
O64 | C59 | C58 | H7 | 179.2° | 60.0° |
O64 | C59 | C58 | H8 | 59.6° | 60.0° |
C58 | C15 | C2 | C1 | 1.3° | 0.1° |
C58 | C15 | C2 | C14 | 178.2° | 180.0° |
C58 | C15 | C2 | C3 | 178.5° | 180.0° |
C58 | C15 | C14 | N13 | 178.6° | 180.0° |
C58 | C15 | C14 | H3 | 1.4° | 0.1° |
C15 | C58 | H7 | H8 | 119.5° | 119.9° |
C6 | C1 | C2 | H1 | 180.0° | 179.7° |
C6 | C1 | C2 | C15 | 178.9° | 179.9° |
C1 | C6 | C5 | H22 | 180.0° | 179.9° |
C6 | C1 | C2 | C3 | 1.3° | 0.0° |
C1 | C6 | C5 | C4 | 0.4° | 0.1° |
C1 | C6 | C5 | C20 | 179.9° | 179.9° |
C1 | C2 | C15 | C3 | 179.8° | 180.0° |
C1 | C2 | C15 | C14 | 179.5° | 179.9° |
C2 | C1 | C6 | C5 | 1.3° | 0.1° |
C1 | C2 | C3 | N13 | 179.6° | 179.9° |
C1 | C2 | C3 | C4 | 0.5° | 0.0° |
C2 | C1 | C6 | H22 | 178.7° | 180.0° |
C2 | C15 | C14 | N13 | 0.4° | 0.0° |
C15 | C2 | C3 | N13 | 0.2° | 0.0° |
C15 | C2 | C3 | C4 | 179.6° | 180.0° |
C15 | C2 | C1 | H1 | 1.1° | 0.4° |
C2 | C15 | C14 | H3 | 179.6° | 179.9° |
C2 | C15 | C58 | H7 | 76.2° | 155.0° |
C2 | C15 | C58 | H8 | 164.2° | 35.0° |
C14 | C15 | C2 | C3 | 0.3° | 0.0° |
C15 | C14 | N13 | H3 | 180.0° | 179.9° |
C15 | C14 | N13 | C3 | 0.2° | 0.0° |
C15 | C14 | N13 | C37 | 179.6° | 180.0° |
C14 | C15 | C58 | H7 | 106.1° | 25.0° |
C14 | C15 | C58 | H8 | 13.6° | 145.0° |
C6 | C5 | C4 | C20 | 179.7° | 180.0° |
C6 | C5 | C4 | C3 | 0.4° | 0.1° |
C6 | C5 | C20 | C26 | 32.8° | 179.7° |
C6 | C5 | C20 | C22 | 146.4° | 0.0° |
C5 | C6 | C1 | H1 | 178.7° | 179.6° |
C6 | C5 | C4 | H2 | 179.6° | 179.9° |
C2 | C3 | N13 | C14 | 0.0° | 0.0° |
C2 | C3 | C4 | C5 | 0.3° | 0.0° |
C2 | C3 | N13 | C4 | 179.8° | 179.9° |
C2 | C3 | N13 | C37 | 179.8° | 180.0° |
C3 | C2 | C1 | H1 | 178.7° | 179.7° |
C2 | C3 | C4 | H2 | 179.6° | 180.0° |
C14 | N13 | C3 | C37 | 179.8° | 180.0° |
C14 | N13 | C3 | C4 | 179.8° | 179.9° |
C14 | N13 | C37 | C38 | 12.6° | 95.0° |
C14 | N13 | C37 | H9 | 133.0° | 25.0° |
C14 | N13 | C37 | H10 | 107.7° | 145.0° |
C5 | C4 | C3 | N13 | 179.5° | 180.0° |
C5 | C4 | C3 | H2 | 180.0° | 180.0° |
C4 | C5 | C20 | C26 | 147.5° | 0.3° |
C4 | C5 | C20 | C22 | 33.3° | 180.0° |
C4 | C5 | C6 | H22 | 179.6° | 180.0° |
C20 | C5 | C4 | C3 | 179.3° | 180.0° |
C5 | C20 | C26 | C22 | 179.2° | 179.7° |
C5 | C20 | C26 | C25 | 179.6° | 179.7° |
C5 | C20 | C22 | C23 | 179.8° | 180.0° |
C20 | C5 | C4 | H2 | 0.7° | 0.1° |
C5 | C20 | C22 | H4 | 0.2° | 0.1° |
C20 | C5 | C6 | H22 | 0.1° | 0.0° |
C5 | C20 | C26 | H27 | 0.4° | 0.1° |
C3 | N13 | C37 | C38 | 167.6° | 85.0° |
N13 | C3 | C4 | H2 | 0.6° | 0.0° |
C3 | N13 | C14 | H3 | 179.7° | 179.9° |
C3 | N13 | C37 | H9 | 47.2° | 155.0° |
C3 | N13 | C37 | H10 | 72.1° | 35.0° |
C4 | C3 | N13 | C37 | 0.0° | 0.1° |
N13 | C37 | C38 | H9 | 120.3° | 120.0° |
N13 | C37 | C38 | H10 | 120.3° | 120.0° |
N13 | C37 | C38 | C41 | 103.4° | 90.0° |
N13 | C37 | C38 | C45 | 74.5° | 90.3° |
C37 | N13 | C14 | H3 | 0.4° | 0.0° |
N13 | C37 | H9 | H10 | 119.1° | 120.0° |
C20 | C26 | C25 | H27 | 180.0° | 179.7° |
C20 | C26 | C25 | N33 | 179.9° | 179.7° |
C20 | C26 | C25 | C24 | 0.2° | 0.6° |
C26 | C20 | C22 | C23 | 0.5° | 0.3° |
C26 | C20 | C22 | H4 | 179.5° | 179.8° |
C25 | C26 | C20 | C22 | 0.3° | 0.6° |
C26 | C25 | N33 | C24 | 179.7° | 179.7° |
C26 | C25 | C24 | C23 | 0.3° | 0.3° |
C26 | C25 | C24 | H5 | 179.7° | 179.7° |
C26 | C25 | N33 | H25 | 180.0° | 179.7° |
C26 | C25 | N33 | H26 | 60.0° | 0.3° |
C20 | C22 | C23 | H4 | 180.0° | 179.9° |
C20 | C22 | C23 | C24 | 0.6° | 0.0° |
C20 | C22 | C23 | N35 | 179.9° | 180.0° |
C22 | C20 | C26 | H27 | 179.7° | 179.7° |
N33 | C25 | C24 | C23 | 180.0° | 180.0° |
N33 | C25 | C24 | H5 | 0.0° | 0.0° |
C25 | N33 | H25 | H26 | 120.0° | 180.0° |
N33 | C25 | C26 | H27 | 0.1° | 0.0° |
C25 | C24 | C23 | C22 | 0.5° | 0.0° |
C25 | C24 | C23 | H5 | 180.0° | 180.0° |
C25 | C24 | C23 | N35 | 180.0° | 180.0° |
C24 | C25 | N33 | H25 | 0.3° | 0.0° |
C24 | C25 | N33 | H26 | 120.3° | 180.0° |
C24 | C25 | C26 | H27 | 179.8° | 179.7° |
C54 | C52 | C43 | C42 | 122.7° | 120.1° |
C54 | C52 | C43 | C44 | 58.6° | 60.0° |
C54 | C52 | C43 | C56 | 124.1° | 120.0° |
C54 | C52 | C43 | H13 | 118.8° | 120.1° |
C54 | C52 | C56 | H13 | 118.9° | 120.1° |
C52 | C54 | H14 | H15 | 120.0° | 120.0° |
C52 | C54 | H14 | H16 | 120.0° | 119.9° |
C52 | C54 | H15 | H16 | 120.0° | 120.0° |
C54 | C52 | C56 | H17 | 180.0° | 180.0° |
C54 | C52 | C56 | H18 | 60.0° | 60.0° |
C54 | C52 | C56 | H19 | 60.0° | 60.0° |
C22 | C23 | C24 | N35 | 179.5° | 180.0° |
C22 | C23 | C24 | H5 | 179.5° | 180.0° |
C22 | C23 | N35 | H23 | 180.0° | 0.0° |
C22 | C23 | N35 | H24 | 60.0° | 179.9° |
C37 | C38 | C41 | C45 | 177.9° | 179.7° |
C37 | C38 | C41 | C42 | 178.3° | 180.0° |
C37 | C38 | C45 | C44 | 177.9° | 179.8° |
C38 | C37 | H9 | H10 | 119.1° | 120.0° |
C37 | C38 | C41 | H11 | 1.8° | 0.1° |
C37 | C38 | C45 | H21 | 2.1° | 0.0° |
C38 | C41 | C42 | H11 | 180.0° | 179.9° |
C41 | C38 | C45 | C44 | 0.1° | 0.5° |
C38 | C41 | C42 | C43 | 0.5° | 0.1° |
C41 | C38 | C37 | H9 | 136.3° | 30.0° |
C41 | C38 | C37 | H10 | 16.9° | 149.9° |
C38 | C41 | C42 | H12 | 179.5° | 180.0° |
C41 | C38 | C45 | H21 | 179.9° | 179.7° |
C45 | C38 | C41 | C42 | 0.4° | 0.3° |
C38 | C45 | C44 | H21 | 180.0° | 179.8° |
C38 | C45 | C44 | C43 | 0.1° | 0.5° |
C45 | C38 | C37 | H9 | 45.8° | 149.7° |
C45 | C38 | C37 | H10 | 165.2° | 29.7° |
C45 | C38 | C41 | H11 | 179.7° | 179.8° |
C38 | C45 | C44 | H20 | 179.9° | 179.8° |
C41 | C42 | C43 | H12 | 180.0° | 179.9° |
C41 | C42 | C43 | C44 | 0.3° | 0.0° |
C41 | C42 | C43 | C52 | 179.0° | 180.0° |
C45 | C44 | C43 | C42 | 0.0° | 0.2° |
C45 | C44 | C43 | H20 | 180.0° | 179.8° |
C45 | C44 | C43 | C52 | 178.6° | 179.8° |
C42 | C43 | C44 | C52 | 178.6° | 180.0° |
C42 | C43 | C52 | C56 | 113.1° | 120.0° |
C43 | C42 | C41 | H11 | 179.5° | 180.0° |
C42 | C43 | C52 | H13 | 3.9° | 0.0° |
C42 | C43 | C44 | H20 | 180.0° | 180.0° |
C24 | C23 | C22 | H4 | 179.4° | 180.0° |
C24 | C23 | N35 | H23 | 0.5° | 180.0° |
C24 | C23 | N35 | H24 | 119.5° | 0.1° |
C44 | C43 | C52 | C56 | 65.5° | 60.0° |
C44 | C43 | C42 | H12 | 179.7° | 180.0° |
C44 | C43 | C52 | H13 | 177.5° | 180.0° |
C43 | C44 | C45 | H21 | 179.9° | 179.8° |
C43 | C52 | C56 | H13 | 117.3° | 119.9° |
C52 | C43 | C42 | H12 | 1.0° | 0.1° |
C43 | C52 | C54 | H14 | 180.0° | 60.0° |
C43 | C52 | C54 | H15 | 60.0° | 60.0° |
C43 | C52 | C54 | H16 | 60.0° | 180.0° |
C43 | C52 | C56 | H17 | 56.2° | 60.0° |
C43 | C52 | C56 | H18 | 176.2° | 180.0° |
C43 | C52 | C56 | H19 | 63.8° | 60.0° |
C52 | C43 | C44 | H20 | 1.4° | 0.0° |
N35 | C23 | C22 | H4 | 0.1° | 0.0° |
N35 | C23 | C24 | H5 | 0.0° | 0.1° |
C23 | N35 | H23 | H24 | 120.0° | 179.9° |
C56 | C52 | C54 | H14 | 57.9° | 180.0° |
C56 | C52 | C54 | H15 | 177.9° | 60.0° |
C56 | C52 | C54 | H16 | 62.1° | 60.0° |
C52 | C56 | H17 | H18 | 120.0° | 120.0° |
C52 | C56 | H17 | H19 | 120.0° | 120.0° |
C52 | C56 | H18 | H19 | 120.0° | 120.0° |
H1 | C1 | C6 | H22 | 1.3° | 0.3° |
H11 | C41 | C42 | H12 | 0.5° | 0.1° |
H13 | C52 | C54 | H14 | 60.9° | 60.0° |
H13 | C52 | C54 | H15 | 59.1° | 180.0° |
H13 | C52 | C54 | H16 | 179.1° | 60.0° |
H13 | C52 | C56 | H17 | 61.1° | 59.9° |
H13 | C52 | C56 | H18 | 58.9° | 60.1° |
H13 | C52 | C56 | H19 | 178.9° | 180.0° |
H14 | C54 | H15 | H16 | 120.0° | 120.1° |
H17 | C56 | H18 | H19 | 120.0° | 120.0° |
H20 | C44 | C45 | H21 | 0.1° | 0.0° |